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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000926
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.557s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0354109.1
n.a. PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] gi|356558318|ref|XP_003547454.1| chr0 186483347 186487649 +
4 domain predictions
2 GO terms
Lj6g3v2203730.1
n.a. PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] gi|356554732|ref|XP_003545697.1| chr6 25475089 25480259 -
4 domain predictions
2 GO terms
LotjaGi3g1v0279800.1
n.a. GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; TAIR: AT5G59750.1 monofunctional riboflavin biosynthesis protein RIBA 3; Swiss-Prot: sp|Q9FN89|RIBA3_ARATH Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic; TrEMBL-Plants: tr|K7M9H6|K7M9H6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0279800 LjG1.1_chr3 55980899 55985102 +
4 domain predictions
2 GO terms
LotjaGi3g1v0279800.2
n.a. GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; TAIR: AT5G59750.1 monofunctional riboflavin biosynthesis protein RIBA 3; Swiss-Prot: sp|Q9FN89|RIBA3_ARATH Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic; TrEMBL-Plants: tr|K7M9H6|K7M9H6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0279800 LjG1.1_chr3 55981064 55985164 +
4 domain predictions
2 GO terms
LotjaGi4g1v0038000.1
n.a. 3,4-dihydroxy-2-butanone 4-phosphate synthase; TAIR: AT5G64300.1 GTP cyclohydrolase II; Swiss-Prot: sp|P47924|RIBA1_ARATH Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic; TrEMBL-Plants: tr|A0A1J7I8M0|A0A1J7I8M0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0038000 LjG1.1_chr4 4574858 4579837 +
4 domain predictions
2 GO terms
LotjaGi6g1v0350800.1
n.a. 3,4-dihydroxy-2-butanone 4-phosphate synthase; TAIR: AT5G64300.1 GTP cyclohydrolase II; Swiss-Prot: sp|P47924|RIBA1_ARATH Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic; TrEMBL-Plants: tr|I1MDY7|I1MDY7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0350800 LjG1.1_chr6 66274473 66280521 -
4 domain predictions
2 GO terms