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LotjaGi3g1v0279800.2

Overview

Field Value
Gene ID LotjaGi3g1v0279800
Transcript ID LotjaGi3g1v0279800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; TAIR: AT5G59750.1 monofunctional riboflavin biosynthesis protein RIBA 3; Swiss-Prot: sp|Q9FN89|RIBA3_ARATH Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic; TrEMBL-Plants: tr|K7M9H6|K7M9H6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0279800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:55981064..55985164) extracted from Lotus japonicus Gifu genome v1.2.

GGAAGCTCATCCATAACTAGAGGTGGAATTTTTTTTCCTGTTTTCCTTCTATCTTGTGCTCGACATAAATCCAGAACATG AACTTATGAGTGTGTTACTTTTTTCAGTTTAGATTAAATTTTGAAGTTGCAGCCTATGGACTCTGCTTCATTCCCTCATC CTTTGATTTCCCAAGTCATCACCAGCTCAAGGTACTATCTTTCTCTACATAGCAATGCACTATAGTTCTTTTCGCTGACT ATTCTTTATTCACAGTTTTCATCGCTCCTACCCAAATCATCAGAGTGCAAGATTCAGCCTTTGGAATAATAGGTTGTGGA ATTCAGCTCTTTGTGCTACTGGGTACTCAGCAGCTGGAATAGAAGACGTGTTCGATGATAGTAACTTGAAGAGAAATGAC AATGGATCCTTCTTTGGTGCCTTAGCACCATTTGAAACGTTAAAAGCTGAAATAACGCCAGAAACAAATGACTTCTTTGT TAGTGATGCTGAAGGTGATCCAGATTGTCCCTCTGAAGGGTACTCTTCCGTTGAGCAGGCCCTTAATACACTACGCCAAG GAAAGGTTGGTTTTACAATCGGTCATAATGTGTTATAGCATGTTCCTATCAGCTTCTCTTTTCTCAAAATCAATTCTGAC ACAAAAGAGTTTCTTAGACATGTTTCTCCTCAGAATTGATTTTGACTTTAGAATCAATGATTTATAAACATGCATTTAGT GGTACCGTAACACACTCTTAATATATGAGTATGATAGGCAAATAACATGTTTTTATATAGCATGTTTTGTTTCACAGTTA AATCTTCTAGAATTACTTCTAGTTAGGAGCTACTAGTCTTAGCTTCAGGAAAAACATGCTTTGAATTCTGTGCAAATTGT AAAATCAAACACCTACTTAGTGCTACAAAAACACACTCTTAAATGAGTATGATATGCAAATAAACATGTTTTTGTTCACT TTTATATTCAGTAAAAGGTTAATCTAACAACTAGCGTACCTTATTTTATTTTCTAGTTTGTGATTGTGGTAGATGATGAA AATGGGGATATTCAAGGAAATCTCATAATGGCTGCATCTCTTACTAGTACCAAGGATGTGGCCTTTATGGTTAAGCATGG ATCAGGTATTGTGTCCGTTGGCATGAAAGAGGAGGATCTTCAAAGACTGAACCTTCCCCTTATGTCACCAGAGACCGAAG ACGAGGATTCTTCTGCCCCCACCTTCACTATCACCGTGGTGAGTACCAAATTCTTTTAGTGTATGTTTAGAAATTCTTCT AGAATTGGTTCTAAAGTCGAAATACATTGTGTGAAGAAGTTAACGTGAGTAGCTTCTAATGTCAGAATTGAACTCCGTGG AAAGAAAAATTGATTCAAATATGCTACTATTATATTTGGATTAACTTCTTTTCTTTCTCTGAGAATCGATTCTCTTGCAT AGAAACTACTGATTGAAGCTTTTCTCAGAATTGATTTTGACTTAAAATGTGTTTCCACAATACGTTCAAGCTTCATATAA CAAATTATCTTAGATTGATGTATGGATGTGAAGCTTACAAGGAGGCATTTGAGATTGTCAAACTCTGTCGTTGTAGGATG CAAAATATGGAACCTCCACAGGTGTATCAGCTGCAGATAGAGCAAAAACAGTTCTTGCTTTGTCATCTCCTGTGTCTACA TCAGAAGACTTCATCAAGCCAGGTCATGTGTTTCCCCTCAAGTATAGAAATGGTGGGGTTCTTAGGAGGGCAGGTCATAC TGAGGCTTCTGTTGATTTAGTTACTCTTGCTGGCTTGTCCCCAGTTTCTGTTCTTACGGCTCTTGTTGATGAAGATGGTG GCTCTATGGCATCTTTGCCCTATTTAAGAAAATTAGCATTCGAATACAGCATACCAATTGTTTCCATAACTGATTTGATA AGGTAAGAGTAGAGTATGTTTGGTGTGTGCAAGTGTTAGAATCGATTCTTCATTATCAAAATGAGCGTGTGTTTGAAAAC TCGTTCGAAAACTTGAAGTAACCAAAATGATAGTGGACAGAAGCAAAAGCTAAGGGAAGTTGCTTCCTTTTACCGTGATT TTGGCTACATCGTCATTTTCGGAAGAGTTTCCAAAAATGCACTTGATTTTTTGGTGTTTAGTTGTTTCCTTTCACATTTA AATATTTGATTCTAGCTCCAAAATCAATTCTGGGATTAAGTTACAAATCCTAGCTTCTCGGATTGACATAATTAATTCTG AGATTTCACAATTGGACTTCACAACATTAGCCCATAAAAATCACTTTTCTTATAGATGTCACTTCACTTTCAACTCATTT TTATCACAATCAGTTCTGTCAACATCAATTCTATTCAAAATCAACTCTGACAACCCTGACCAAAACACATATTAAGTAGT TAGGCAGACATAGTTTCACCATACCTTCACTTTTGAGAAACAATAAGCAACTTCGGTTCCTTCTTCCTATGTCAGTAGTT CTGCTTACTGCATTGAACAGTTGGCTTTCTTCTGATTTATAAGCTAATCAAATTCACCTAAATGATGTGACTGTATATAC TGCTAAGGTACCGGAGAAAGCGAGAAAAGTTGGTTGAAAGAACTTCTGTTTCTCGTCTGCCTACAAAGTGGGGTTTATTT CAAGCATATTGCTACCGCTCAAAGTTGGATGGAACAGAACACATAGCTATTGTGAAGGTAAGAAATATTTATTTAGAGAA GAAATTTATAAGAGAAAGAAAGAGAAGACTGTAATGTGAAATTTGAATCATAGCTTTGCTAACTGATTTCTTAAGGGTGT ATATATACAAATGGTTCTAAAGTGAAAAGTCAGAATCAATTTCTGTGAAGAAGCTACAATGAGTAGCTTCTAGGTTCCAA AGTTGATTCAAAAGAGAAGTCGAATCTGTTATTAGCTACTTGTTTTATATATTCTAAGTGATCAACTTACATGCATAGGG AGACATAGGAGATGGGCAAGATGTCCTTGTGCGAGTACATTCAGAATGTTTAACAGGAGATATTTTTGGATCAGCTCGGT GTGACTGTGGCGACCAGTTAGATTTGGCAATGAGACTGATCGAAGAAGCAGGTAGAGGAGTAGTTGTCTATCTTCGAGGT CATGAGGGAAGAGGCATTGGACTTGGTCACAAACTTAAGGCCTATAATTTGCAGGATCAAGGCCATGACACAGTTCAGGC AAACATAGAATTGGGGTTAGCTGTTGATGCTCGTGAATATGGGATTGGTGCCCAGGTCAGATTTATCCATCATTGTTGCT TCTAGTGTGTGTTTTACTTTCAACGTGTTTGAGGCACACTCTAAACCACTTAGATATTGTGTTTCTTTTATAGTATATTA TGTTAGTGAACCCTTCCTGTGATTGCATTTAATTTGAGGAATTTATATGGATGCTTGATGATTTATTTTAAGCATCCTTC AAGAACTGTTAAGTTTAATGTTACAAAATAAGCTGATTTTATATCCTGGTGCTGACAAATAACCATGAAGTATGCAGATT CTGGGGGATATAGGAGTTAGAACTATGAGGCTAATGACTAACAACCCAGCAAAGTTCACTGGTCTCAAAGGGTATGGTTT GGCAGTGCTAGGGAGGGTTCCTGTAATGACACCAATTACTGAGGAAAACAAGAGGTACCTGGAAACAAAAAGGACCAAAA TGGGACATGTTTATGGGTCTGATATACAAGGATCGTTACCTGGATTCAACAATTCAATTGTAAATGACCAAGACTTACCA GAGAACACTTAGCGCACACATGTTTGGGGATCTTTCTATAATTTATTTTATTGGCAAACTCCATTCTGGTTAGAAGAAGC TTGTGTGAGTAGCTTCTGAGCATAATCCGAGAAGATAGAAGCTGATCATAACATATGTGTTGATAGTCTATACAAAAATA CAACAGGGAAAAAAACTTTATACACTATTGAAAAAAATTAAAGGATGAAATTCATTTGTGAAGATTGTAATTAGCTCACT CTATGTAAATTTTGGTACTCATAAGCTTCAAATTACCAGATACTAGTGTTATTTACCCGCGCGTTGCACGGGGAATACAT CTATTATATTTGATAGGTCAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0279800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTCTGCTTCATTCCCTCATCCTTTGATTTCCCAAGTCATCACCAGCTCAAGTTTTCATCGCTCCTACCCAAATCA TCAGAGTGCAAGATTCAGCCTTTGGAATAATAGGTTGTGGAATTCAGCTCTTTGTGCTACTGGGTACTCAGCAGCTGGAA TAGAAGACGTGTTCGATGATAGTAACTTGAAGAGAAATGACAATGGATCCTTCTTTGGTGCCTTAGCACCATTTGAAACG TTAAAAGCTGAAATAACGCCAGAAACAAATGACTTCTTTGTTAGTGATGCTGAAGGTGATCCAGATTGTCCCTCTGAAGG GTACTCTTCCGTTGAGCAGGCCCTTAATACACTACGCCAAGGAAAGTTTGTGATTGTGGTAGATGATGAAAATGGGGATA TTCAAGGAAATCTCATAATGGCTGCATCTCTTACTAGTACCAAGGATGTGGCCTTTATGGTTAAGCATGGATCAGGTATT GTGTCCGTTGGCATGAAAGAGGAGGATCTTCAAAGACTGAACCTTCCCCTTATGTCACCAGAGACCGAAGACGAGGATTC TTCTGCCCCCACCTTCACTATCACCGTGGATGCAAAATATGGAACCTCCACAGGTGTATCAGCTGCAGATAGAGCAAAAA CAGTTCTTGCTTTGTCATCTCCTGTGTCTACATCAGAAGACTTCATCAAGCCAGGTCATGTGTTTCCCCTCAAGTATAGA AATGGTGGGGTTCTTAGGAGGGCAGGTCATACTGAGGCTTCTGTTGATTTAGTTACTCTTGCTGGCTTGTCCCCAGTTTC TGTTCTTACGGCTCTTGTTGATGAAGATGGTGGCTCTATGGCATCTTTGCCCTATTTAAGAAAATTAGCATTCGAATACA GCATACCAATTGTTTCCATAACTGATTTGATAAGGTACCGGAGAAAGCGAGAAAAGTTGGTTGAAAGAACTTCTGTTTCT CGTCTGCCTACAAAGTGGGGTTTATTTCAAGCATATTGCTACCGCTCAAAGTTGGATGGAACAGAACACATAGCTATTGT GAAGGGAGACATAGGAGATGGGCAAGATGTCCTTGTGCGAGTACATTCAGAATGTTTAACAGGAGATATTTTTGGATCAG CTCGGTGTGACTGTGGCGACCAGTTAGATTTGGCAATGAGACTGATCGAAGAAGCAGGTAGAGGAGTAGTTGTCTATCTT CGAGGTCATGAGGGAAGAGGCATTGGACTTGGTCACAAACTTAAGGCCTATAATTTGCAGGATCAAGGCCATGACACAGT TCAGGCAAACATAGAATTGGGGTTAGCTGTTGATGCTCGTGAATATGGGATTGGTGCCCAGATTCTGGGGGATATAGGAG TTAGAACTATGAGGCTAATGACTAACAACCCAGCAAAGTTCACTGGTCTCAAAGGGTATGGTTTGGCAGTGCTAGGGAGG GTTCCTGTAATGACACCAATTACTGAGGAAAACAAGAGGTACCTGGAAACAAAAAGGACCAAAATGGGACATGTTTATGG GTCTGATATACAAGGATCGTTACCTGGATTCAACAATTCAATTGTAAATGACCAAGACTTACCAGAGAACACTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0279800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSASFPHPLISQVITSSSFHRSYPNHQSARFSLWNNRLWNSALCATGYSAAGIEDVFDDSNLKRNDNGSFFGALAPFET LKAEITPETNDFFVSDAEGDPDCPSEGYSSVEQALNTLRQGKFVIVVDDENGDIQGNLIMAASLTSTKDVAFMVKHGSGI VSVGMKEEDLQRLNLPLMSPETEDEDSSAPTFTITVDAKYGTSTGVSAADRAKTVLALSSPVSTSEDFIKPGHVFPLKYR NGGVLRRAGHTEASVDLVTLAGLSPVSVLTALVDEDGGSMASLPYLRKLAFEYSIPIVSITDLIRYRRKREKLVERTSVS RLPTKWGLFQAYCYRSKLDGTEHIAIVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGDQLDLAMRLIEEAGRGVVVYL RGHEGRGIGLGHKLKAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILGDIGVRTMRLMTNNPAKFTGLKGYGLAVLGR VPVMTPITEENKRYLETKRTKMGHVYGSDIQGSLPGFNNSIVNDQDLPENT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21327:SF29
4 526 523 1.4E-295 –
PANTHER
PTHR21327
4 526 523 1.4E-295 –
Gene3D
G3DSA:3.90.870.10
102 313 212 3.1E-73 –
Hamap
MF_01283
107 504 398 50.173
IPR016299
SUPERFAMILY
SSF55821
109 314 206 7.55E-65
IPR017945
TIGRFAM
TIGR00506
110 307 198 9.6E-58
IPR000422
Pfam
PF00926
112 306 195 2.2E-67
IPR000422
Hamap
MF_00179
312 508 197 39.608
IPR000926
SUPERFAMILY
SSF142695
312 484 173 2.62E-69
IPR036144
CDD
cd00641
313 504 192 5.1924E-117
IPR000926
Gene3D
G3DSA:3.40.50.10990
314 485 172 1.6E-73
IPR036144
TIGRFAM
TIGR00505
319 505 187 9.2E-75
IPR000926
Pfam
PF00925
319 482 164 1.3E-71
IPR032677

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003935
Molecular function GTP cyclohydrolase II activity Catalysis of the reaction: GTP + 3 H(2)O = 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + diphosphate + formate + 3 H(+).
Subterm of
GO:0008686
Molecular function 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Catalysis of the reaction: D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H(+).
Subterm of
GO:0009231
Biological process Riboflavin biosynthetic process The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0279800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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