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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0280400 |
| Transcript ID | LotjaGi3g1v0280400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyl-CpG-binding domain protein; TAIR: AT5G59800.1 methyl-CPG-binding domain 7; Swiss-Prot: sp|Q9FJF4|MBD7_ARATH Methyl-CpG-binding domain-containing protein 7; TrEMBL-Plants: tr|I1KJG1|I1KJG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0280400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56091154..56093543) extracted from Lotus japonicus Gifu genome v1.2.
TAGGAAACCACATGTCACTATTATGACGGTTTTCAAGCATATAAATGTAGGTTTAGTCGTTCATTCATGTATGCATTACT CATGATACAAATTTAAATTTTTCTTAAGCTTTGAGATCCTCTCTTTATTATCTCACCGACTTGAGCGTTAGTTTGCAAGT ATATCCTCTGTTATATCAACGCAGCCCTGTTGTGTAAGAGAATCCTCCCAAGGCCCCGCACCCCATTTGAGAGAGAGATA TTTTATTTTACCAATCTCAATTTGGGAAGAACATGTAGGTATATGTTATTGTTTTACACATTTTTCGTCCCCATTTGATT TGCACGTTTTGTATAAATGTAGGATGACTGTGAGTGAGACCCAAGTCAGGGCAACAACAACACCACCAGTCCACCAGCAG ATGGCAGACATTAATCAGAACCCGAGTGAAAAGGAATTTCAGATTGTGCGGTTTAAGCCACCCCCAAACTTCAAGCTTCC CGATGGTTGGGTGGTTGAGGAAAAACCCCGTCCTGCTAATTCCTCTAAACGCCGTGATAGGGTATGCATTCATTCCCTTC TTTCATTGTTCATCCATGCATGCATGTCATAAATTCGTAGTGATTCATTCGAATTCCACGACTAGGGATTTCATTTCGGG ATGGATTCGTGAACTGCTCACAGATGTTGCATTGCATGTGAATATGATTCATTTCTACAGTCAACACATTTAGGTTTGAG TTCTCTGTGCAAGAATTTGATGTTTTTTTTAATCTTGTTTGTGCAGTATTACTATGAGCCAGGCACTGGAAGGCAGTTTC GCTCTCTGATATCTGTTCAGAAATATCTAACAGAAGAAGCAAAAGACAATGTGAGTTCTTAATTGTTGCTGTATCGTTTA CACAAGTGTGCCTCTTTAATCAAGTAGCATATGGAATATAGTGGAATCTGTGATGATACTTCAAAAGACAAATGAAATCT ACCTAAATAGTCAAACAGAGCTTGGAGGGAAGAAAGTAGCATATGGAATATAGCATGTTTAATTAGATTAGACATAATTA TTGCAATTCTCTAGGCTGTATCTTCGATTAGGCGCCCATACTGCTACAGATGCAGATCATGACTCACACCAGGGTTTTAC AACATGCATTAAGCTACCTAATGATGGGATTATTAAGGAGAAACCCTATAACAACAATGACTATGCTCGATTGGAGATAC AGACAACATATTTCTATTTTACCAAACATTTTGTCATCTGGGTTATGTTCTGATTTATAACTTTTTGTACGAAAAAATGT TTTAATTTGGTTTATAAGATTGTAGGAAGACAAAATAAATTGGACTTAATTATTCATTTTCCTGGCAATGAGCCAAATAT GTATCCTTTGGCTGCATGAATAGGTTATGGTGGACAACTACATCAAAGGTGTCAAAACCAAGCAAACTAATTACTCAAAT ACTTTCAGTTTGACGATAAAGTTGTGCCATCAACATACTTGAAAGCGAAGTGTGACTATCTAATTCATGTTATTTTCAGT CAGGGGTGAAATCTGGAAATGGAAAGCGAAGTGCTTGTGGTGTGAGAAGTCCCGGAAAATCTGCCACAAAACGCTCCTCA GTTGCTAAAGAAGAGGGTTTCACTTCAAAGACATTGAACTTTTCTGTTCAGTCTACGGTGAGTTTCAAAACTATGGACTT TATAATAGAACAGGAACCAACAGTACATTGGTAGAATTTTTGAATCAGCTTATGTTTTCTCAAAATCAATTATGCAATCC AGAAGCTACTCATTGAAGCTTGTTCTTCCCAGAATAGCTTCTGAATCATGGTAGAAGGATTTCCAACCTTACACTCAATT AATTGAATTTCTTTCTGAGCAGCCTACAAAAACTGATTCTCAGAGGAAAGAAGATAGAGGAGGATCCACCCACAACTTAA GCAGACCGCCAGAAAAAGTAAGTTGGGTTCTGTCTGGTCCTGGGGGCTACTGGAACCCTTTCGTGGATGATACTATTGTA CCAGAATCTGAAATGCTGAAATGGTCCGAAGCATTTGGGCAATCCATCCATGGTGGAGTTAATAACTGAGGTAATCTTTG AAGTAAGTTAAAATTGCTTTCACACCTCAAAAGCATAGAAATTCCCGGGTTGATTCCATTGAACTTTGCAAGATATTCAG AATGGAGATGACCGAACATAATGGTGAGCAATGTTCTGGCACCATGTAGCTTAGATTGTAGATAGGATTATCCATGTGAG ATGTGACTAATCTTTAACTCATATGCAGAGTTTGTTCTATTTTACTGATTATAATGTAGTTTGTAACTTTGTATCACACC CAGGAGTAATTTTTCTTTTTGGGCTGCACCTTGGTATGGGGGTAAGCAAACTGGTGAAATATTTTGACAT
CDS sequence (LotjaGi3g1v0280400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGTGAGTGAGACCCAAGTCAGGGCAACAACAACACCACCAGTCCACCAGCAGATGGCAGACATTAATCAGAACCC GAGTGAAAAGGAATTTCAGATTGTGCGGTTTAAGCCACCCCCAAACTTCAAGCTTCCCGATGGTTGGGTGGTTGAGGAAA AACCCCGTCCTGCTAATTCCTCTAAACGCCGTGATAGGTATTACTATGAGCCAGGCACTGGAAGGCAGTTTCGCTCTCTG ATATCTGTTCAGAAATATCTAACAGAAGAAGCAAAAGACAATTCAGGGGTGAAATCTGGAAATGGAAAGCGAAGTGCTTG TGGTGTGAGAAGTCCCGGAAAATCTGCCACAAAACGCTCCTCAGTTGCTAAAGAAGAGGGTTTCACTTCAAAGACATTGA ACTTTTCTGTTCAGTCTACGCCTACAAAAACTGATTCTCAGAGGAAAGAAGATAGAGGAGGATCCACCCACAACTTAAGC AGACCGCCAGAAAAAGTAAGTTGGGTTCTGTCTGGTCCTGGGGGCTACTGGAACCCTTTCGTGGATGATACTATTGTACC AGAATCTGAAATGCTGAAATGGTCCGAAGCATTTGGGCAATCCATCCATGGTGGAGTTAATAACTGA
Protein sequence (LotjaGi3g1v0280400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVSETQVRATTTPPVHQQMADINQNPSEKEFQIVRFKPPPNFKLPDGWVVEEKPRPANSSKRRDRYYYEPGTGRQFRSL ISVQKYLTEEAKDNSGVKSGNGKRSACGVRSPGKSATKRSSVAKEEGFTSKTLNFSVQSTPTKTDSQRKEDRGGSTHNLS RPPEKVSWVLSGPGGYWNPFVDDTIVPESEMLKWSEAFGQSIHGGVNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 35 | 107 | 73 | 13.557 | ||
| Pfam | 37 | 99 | 63 | 2.2E-8 | ||
| Gene3D | 39 | 103 | 65 | 8.9E-15 | – | |
| SUPERFAMILY | 40 | 90 | 51 | 3.92E-14 | ||
| PANTHER | 42 | 203 | 162 | 8.0E-29 | – | |
| PANTHER | 42 | 203 | 162 | 8.0E-29 | – | |
| MobiDBLite | 44 | 71 | 28 | - | – | |
| MobiDBLite | 56 | 71 | 16 | - | – | |
| MobiDBLite | 91 | 166 | 76 | - | – | |
| MobiDBLite | 126 | 143 | 18 | - | – | |
| MobiDBLite | 144 | 158 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0280400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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