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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001739
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.228s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0081689.1
n.a. Methyl-CpG binding [Medicago truncatula] gi|124359618|gb|ABD32284.2| chr0 31964659 31970224 -
3 domain predictions
2 GO terms
Lj0g3v0081689.2
n.a. Methyl-CpG binding [Medicago truncatula] gi|124359618|gb|ABD32284.2| chr0 31966520 31970224 -
4 domain predictions
2 GO terms
Lj0g3v0126339.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 7-like [Glycine max] gi|356520740|ref|XP_003529018.1| chr0 56844167 56846436 +
4 domain predictions
2 GO terms
Lj2g3v0276760.2
n.a. methyl binding domain protein [Populus trichocarpa] gi|224134745|ref|XP_002321896.1| chr2 4743689 4747199 +
5 domain predictions
2 GO terms
Lj2g3v0914330.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Glycine max] gi|356520885|ref|XP_003529090.1| chr2 14146419 14152535 +
5 domain predictions
2 GO terms
Lj2g3v0917350.1
n.a. Uncharacterized protein TCM_042767 [Theobroma cacao] gi|508726253|gb|EOY18150.1| chr2 14559458 14562230 -
2 domain predictions
2 GO terms
Lj2g3v0917350.2
n.a. Uncharacterized protein TCM_042767 [Theobroma cacao] gi|508726253|gb|EOY18150.1| chr2 14559458 14564196 -
2 domain predictions
2 GO terms
Lj2g3v1014400.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Cicer arietinum] gi|502090713|ref|XP_004489317.1| chr2 15598802 15614731 -
4 domain predictions
2 GO terms
Lj3g3v2200290.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 10-like [Cicer arietinum] gi|502147866|ref|XP_004506946.1| chr3 27268942 27271786 -
4 domain predictions
2 GO terms
Lj4g3v1880940.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 10-like [Cicer arietinum] gi|502151520|ref|XP_004508481.1| chr4 26249972 26255746 +
4 domain predictions
2 GO terms
Lj4g3v2917630.1
n.a. Uncharacterized protein TCM_016211 [Theobroma cacao] gi|508777412|gb|EOY24668.1| chr4 38825065 38833295 -
4 domain predictions
2 GO terms
Lj4g3v2917630.3
n.a. Uncharacterized protein TCM_016211 [Theobroma cacao] gi|508777412|gb|EOY24668.1| chr4 38825065 38833295 -
4 domain predictions
2 GO terms
Lj5g3v0196880.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Glycine max] gi|356520885|ref|XP_003529090.1| chr5 1751862 1757978 -
5 domain predictions
2 GO terms
Lj5g3v1696670.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Cicer arietinum] gi|502118026|ref|XP_004496064.1| chr5 24015741 24017121 +
2 domain predictions
2 GO terms
Lj5g3v1696710.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Cicer arietinum] gi|502118026|ref|XP_004496064.1| chr5 24021778 24023321 +
5 domain predictions
2 GO terms
LotjaGi2g1v0145200.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|K7MIH7|K7MIH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0145200 LjG1.1_chr2 52491412 52494894 +
4 domain predictions
2 GO terms
LotjaGi2g1v0234500.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G35330.1 methyl-CPG-binding domain protein 02; Swiss-Prot: sp|Q8LA53|MBD2_ARATH Methyl-CpG-binding domain-containing protein 2; TrEMBL-Plants: tr|A0A151T2U3|A0A151T2U3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234500 LjG1.1_chr2 69387469 69393960 +
4 domain predictions
2 GO terms
LotjaGi2g1v0248100.1
n.a. Methyl-CpG-binding domain-containing protein 9; TAIR: AT3G01460.1 methyl-CPG-binding domain 9; Swiss-Prot: sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9; TrEMBL-Plants: tr|I1M022|I1M022_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0248100 LjG1.1_chr2 71364106 71383994 -
3 domain predictions
2 GO terms
LotjaGi3g1v0280400.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G59800.1 methyl-CPG-binding domain 7; Swiss-Prot: sp|Q9FJF4|MBD7_ARATH Methyl-CpG-binding domain-containing protein 7; TrEMBL-Plants: tr|I1KJG1|I1KJG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0280400 LjG1.1_chr3 56091154 56093543 -
3 domain predictions
2 GO terms
LotjaGi3g1v0280400.2
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G59800.1 methyl-CPG-binding domain 7; Swiss-Prot: sp|Q9FJF4|MBD7_ARATH Methyl-CpG-binding domain-containing protein 7; TrEMBL-Plants: tr|A0A0B2P285|A0A0B2P285_GLYSO Methyl-CpG-binding domain-containing protein 7; Found in the gene: LotjaGi3g1v0280400 LjG1.1_chr3 56091154 56093543 -
3 domain predictions
2 GO terms
LotjaGi3g1v0280500.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G59800.1 methyl-CPG-binding domain 7; Swiss-Prot: sp|Q9FJF4|MBD7_ARATH Methyl-CpG-binding domain-containing protein 7; TrEMBL-Plants: tr|I3SW30|I3SW30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0280500 LjG1.1_chr3 56118528 56125524 -
3 domain predictions
2 GO terms
LotjaGi3g1v0356500.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT1G15340.1 methyl-CPG-binding domain 10; Swiss-Prot: sp|Q9XI36|MBD10_ARATH Methyl-CpG-binding domain-containing protein 10; TrEMBL-Plants: tr|I3SMM8|I3SMM8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356500 LjG1.1_chr3 73822440 73825787 -
3 domain predictions
2 GO terms
LotjaGi3g1v0356500.2
n.a. Methyl-CpG-binding domain protein; TAIR: AT1G15340.1 methyl-CPG-binding domain 10; Swiss-Prot: sp|Q9XI36|MBD10_ARATH Methyl-CpG-binding domain-containing protein 10; TrEMBL-Plants: tr|I3SMM8|I3SMM8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356500 LjG1.1_chr3 73822913 73825724 -
3 domain predictions
2 GO terms
LotjaGi4g1v0272500.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT3G15790.1 methyl-CPG-binding domain 11; Swiss-Prot: sp|Q9LW00|MBD11_ARATH Methyl-CpG-binding domain-containing protein 11; TrEMBL-Plants: tr|A0A1J7I076|A0A1J7I076_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0272500 LjG1.1_chr4 64012730 64021574 +
3 domain predictions
2 GO terms
LotjaGi4g1v0272500.2
n.a. Methyl-CpG-binding domain protein; TAIR: AT3G15790.1 methyl-CPG-binding domain 11; Swiss-Prot: sp|Q9LW00|MBD11_ARATH Methyl-CpG-binding domain-containing protein 11; TrEMBL-Plants: tr|A0A1J7I076|A0A1J7I076_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0272500 LjG1.1_chr4 64012925 64017968 +
3 domain predictions
2 GO terms
LotjaGi4g1v0423500.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|A0A0B2QVK9|A0A0B2QVK9_GLYSO Methyl-CpG-binding domain-containing protein 13; Found in the gene: LotjaGi4g1v0423500 LjG1.1_chr4 79851388 79860332 -
3 domain predictions
2 GO terms
LotjaGi4g1v0423500.2
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|A0A0B2QVK9|A0A0B2QVK9_GLYSO Methyl-CpG-binding domain-containing protein 13; Found in the gene: LotjaGi4g1v0423500 LjG1.1_chr4 79851388 79860332 -
3 domain predictions
2 GO terms
LotjaGi4g1v0423500.3
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|A0A0B2QVK9|A0A0B2QVK9_GLYSO Methyl-CpG-binding domain-containing protein 13; Found in the gene: LotjaGi4g1v0423500 LjG1.1_chr4 79851388 79860332 -
3 domain predictions
2 GO terms
LotjaGi4g1v0423500.4
n.a. Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|I1KP74|I1KP74_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0423500 LjG1.1_chr4 79851907 79860289 -
3 domain predictions
2 GO terms
LotjaGi5g1v0259700.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT3G63030.1 methyl-CPG-binding domain 4; Swiss-Prot: sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4; TrEMBL-Plants: tr|I3SHA3|I3SHA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0259700 LjG1.1_chr5 56821301 56823132 -
4 domain predictions
2 GO terms
LotjaGi5g1v0259800.1
n.a. Methyl-CpG-binding domain protein; TAIR: AT3G63030.1 methyl-CPG-binding domain 4; Swiss-Prot: sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4; TrEMBL-Plants: tr|I3SU39|I3SU39_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0259800 LjG1.1_chr5 56831668 56833917 -
4 domain predictions
2 GO terms
LotjaGi6g1v0351800.1
n.a. Methyl-CpG-binding domain-containing protein 8; TAIR: AT1G22310.1 methyl-CPG-binding domain 8; Swiss-Prot: sp|Q9LME6|MBD8_ARATH Methyl-CpG-binding domain-containing protein 8; TrEMBL-Plants: tr|V7BR06|V7BR06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351800 LjG1.1_chr6 66385810 66389145 +
2 domain predictions
2 GO terms