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PS50982

Source: ProSiteProfiles

Description

Methyl-CpG-binding domain (MBD) profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Associated Lotus transcripts 29

Transcript Name Description Predicted domains Domain count
Lj0g3v0081689.1
– Methyl-CpG binding [Medicago truncatula] gi|124359618|gb|ABD32284.2|
Domains
8
Lj0g3v0081689.2
– Methyl-CpG binding [Medicago truncatula] gi|124359618|gb|ABD32284.2|
Domains
9
Lj0g3v0126339.1
– PREDICTED: methyl-CpG-binding domain-containing protein 7-like [Glycine max] gi|356520740|ref|XP_003529018.1|
Domains
9
Lj2g3v0276760.2
– Methyl binding domain protein [Populus trichocarpa] gi|224134745|ref|XP_002321896.1|
Domains
10
Lj2g3v0914330.1
– PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Glycine max] gi|356520885|ref|XP_003529090.1|
Domains
13
Lj2g3v1014400.1
– PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Cicer arietinum] gi|502090713|ref|XP_004489317.1|
Domains
32
Lj3g3v2200290.1
– PREDICTED: methyl-CpG-binding domain-containing protein 10-like [Cicer arietinum] gi|502147866|ref|XP_004506946.1|
Domains
9
Lj4g3v1880940.1
– PREDICTED: methyl-CpG-binding domain-containing protein 10-like [Cicer arietinum] gi|502151520|ref|XP_004508481.1|
Domains
9
Lj4g3v2917630.1
– Uncharacterized protein TCM_016211 [Theobroma cacao] gi|508777412|gb|EOY24668.1|
Domains
8
Lj4g3v2917630.3
– Uncharacterized protein TCM_016211 [Theobroma cacao] gi|508777412|gb|EOY24668.1|
Domains
8
Lj5g3v0196880.1
– PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Glycine max] gi|356520885|ref|XP_003529090.1|
Domains
13
Lj5g3v1696710.1
– PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Cicer arietinum] gi|502118026|ref|XP_004496064.1|
Domains
12
LotjaGi2g1v0145200.1
– Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|K7MIH7|K7MIH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0145200
Domains
11
LotjaGi2g1v0234500.1
– Methyl-CpG-binding domain protein; TAIR: AT5G35330.1 methyl-CPG-binding domain protein 02; Swiss-Prot: sp|Q8LA53|MBD2_ARATH Methyl-CpG-binding domain-containing protein 2; TrEMBL-Plants: tr|A0A151T2U3|A0A151T2U3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0234500
Domains
15
LotjaGi2g1v0248100.1
– Methyl-CpG-binding domain-containing protein 9; TAIR: AT3G01460.1 methyl-CPG-binding domain 9; Swiss-Prot: sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9; TrEMBL-Plants: tr|I1M022|I1M022_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0248100
Domains
32
LotjaGi3g1v0280400.1
– Methyl-CpG-binding domain protein; TAIR: AT5G59800.1 methyl-CPG-binding domain 7; Swiss-Prot: sp|Q9FJF4|MBD7_ARATH Methyl-CpG-binding domain-containing protein 7; TrEMBL-Plants: tr|I1KJG1|I1KJG1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0280400
Domains
9
LotjaGi3g1v0280400.2
– Methyl-CpG-binding domain protein; TAIR: AT5G59800.1 methyl-CPG-binding domain 7; Swiss-Prot: sp|Q9FJF4|MBD7_ARATH Methyl-CpG-binding domain-containing protein 7; TrEMBL-Plants: tr|A0A0B2P285|A0A0B2P285_GLYSO Methyl-CpG-binding domain-containing protein 7; Found in the gene: LotjaGi3g1v0280400
Domains
9
LotjaGi3g1v0280500.1
– Methyl-CpG-binding domain protein; TAIR: AT5G59800.1 methyl-CPG-binding domain 7; Swiss-Prot: sp|Q9FJF4|MBD7_ARATH Methyl-CpG-binding domain-containing protein 7; TrEMBL-Plants: tr|I3SW30|I3SW30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0280500
Domains
9
LotjaGi3g1v0356500.1
– Methyl-CpG-binding domain protein; TAIR: AT1G15340.1 methyl-CPG-binding domain 10; Swiss-Prot: sp|Q9XI36|MBD10_ARATH Methyl-CpG-binding domain-containing protein 10; TrEMBL-Plants: tr|I3SMM8|I3SMM8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356500
Domains
9
LotjaGi3g1v0356500.2
– Methyl-CpG-binding domain protein; TAIR: AT1G15340.1 methyl-CPG-binding domain 10; Swiss-Prot: sp|Q9XI36|MBD10_ARATH Methyl-CpG-binding domain-containing protein 10; TrEMBL-Plants: tr|I3SMM8|I3SMM8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356500
Domains
9
LotjaGi4g1v0272500.1
– Methyl-CpG-binding domain protein; TAIR: AT3G15790.1 methyl-CPG-binding domain 11; Swiss-Prot: sp|Q9LW00|MBD11_ARATH Methyl-CpG-binding domain-containing protein 11; TrEMBL-Plants: tr|A0A1J7I076|A0A1J7I076_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0272500
Domains
11
LotjaGi4g1v0272500.2
– Methyl-CpG-binding domain protein; TAIR: AT3G15790.1 methyl-CPG-binding domain 11; Swiss-Prot: sp|Q9LW00|MBD11_ARATH Methyl-CpG-binding domain-containing protein 11; TrEMBL-Plants: tr|A0A1J7I076|A0A1J7I076_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0272500
Domains
11
LotjaGi4g1v0423500.1
– Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|A0A0B2QVK9|A0A0B2QVK9_GLYSO Methyl-CpG-binding domain-containing protein 13; Found in the gene: LotjaGi4g1v0423500
Domains
11
LotjaGi4g1v0423500.2
– Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|A0A0B2QVK9|A0A0B2QVK9_GLYSO Methyl-CpG-binding domain-containing protein 13; Found in the gene: LotjaGi4g1v0423500
Domains
11
LotjaGi4g1v0423500.3
– Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|A0A0B2QVK9|A0A0B2QVK9_GLYSO Methyl-CpG-binding domain-containing protein 13; Found in the gene: LotjaGi4g1v0423500
Domains
11
LotjaGi4g1v0423500.4
– Methyl-CpG-binding domain protein; TAIR: AT5G52230.1 methyl-CPG-binding domain protein 13; Swiss-Prot: sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13; TrEMBL-Plants: tr|I1KP74|I1KP74_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0423500
Domains
11
LotjaGi5g1v0259700.1
– Methyl-CpG-binding domain protein; TAIR: AT3G63030.1 methyl-CPG-binding domain 4; Swiss-Prot: sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4; TrEMBL-Plants: tr|I3SHA3|I3SHA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0259700
Domains
13
LotjaGi5g1v0259800.1
– Methyl-CpG-binding domain protein; TAIR: AT3G63030.1 methyl-CPG-binding domain 4; Swiss-Prot: sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4; TrEMBL-Plants: tr|I3SU39|I3SU39_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0259800
Domains
15
LotjaGi6g1v0351800.1
– Methyl-CpG-binding domain-containing protein 8; TAIR: AT1G22310.1 methyl-CPG-binding domain 8; Swiss-Prot: sp|Q9LME6|MBD8_ARATH Methyl-CpG-binding domain-containing protein 8; TrEMBL-Plants: tr|V7BR06|V7BR06_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0351800
Domains
12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF54171 SUPERFAMILY 1 3.45