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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0280500 |
| Transcript ID | LotjaGi3g1v0280500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyl-CpG-binding domain protein; TAIR: AT5G59800.1 methyl-CPG-binding domain 7; Swiss-Prot: sp|Q9FJF4|MBD7_ARATH Methyl-CpG-binding domain-containing protein 7; TrEMBL-Plants: tr|I3SW30|I3SW30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0280500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56118528..56125524) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATGGAGTTAAACTCACAGTTTCAAAAAAAAAAGAAAATTGTATTGTAAGTTTTGATCTGCAGTGTATGAATGAAG CGGTGAGTGACACTTGACACACAAGTCAGGGCAACACAACCACCAGCAACACTGCTTGTCCTTAACGCCTTAACGGGAGC GCCGATGGCAGACACTGATGGTGTTCAAAAGGAACAGTTGAATCAGAACCCGAGCGGAAACGAGTTTCAGATTGTGCGGT TTATGCCATTCCCAAACTTCAAGCTTCCCGATGATTGGGTGGTTGAGACTAAACCCCGTCCCTCTAAACCAACTCACATT GACAAGGTATGCTGCATTCACCTTCATTCTCTTCGTTGTTCTTTATTCATCCATACATGCATGTTTTCATCATGAACCAT TTCTATGTAGTTACTCTGGAACGGTGTCTGAATTAGTATTTAGTAGTGACTAGTTCGAATTTCACGATTAGGGATTTTAA TATTTGATTGATTCTTGTACTGCTCACTGATGCTTGTGCAATTTATTGAACTCCTACCACCTTATGCATGTTAAACAATT ATTTTATGTGTGTGTGTGTGTGTGCTCAGTAGGCTTTTCTAATTGAAATTTATCCAAGGATGGTAATATATTTATCATGT GTTTGAAAACGTGCGCAATGAGTGTTTTCATTTTTTAGTGTTTGACTCCTTATGGATTTCAGGGTTTTAAATTTCAGTTG CTGCTAGGTAGCGGAATTGCAAACAAATGTGGGTCGATGCTGCTGCAATTGCGGTCCCAGGCCCGCAAAAGCTGTCTGCA ATTGTGGTTGCAGACCACAATTTAAAACTGTGATGGATATAGGCATTAGGCACATCTCTTCAAAGGTTACTGCCACATTT CAAAAATCAAAATTTGACAAAACACCTTTGCAATACTATATGTTACGATGGAAGTTTGCAAGAAATGGTTGATGTGACAA AGCTAACTTTGTTATTTGATGGAAATCATGTGGTTTAGTGAGAGATAACTACCACTTCTGCTGTTTTGTATAGTAACTTT TAGTATTTTCCTAATTCAAAACAAGTTCAATTTCTGGAGCACTCAACACGACTTTTCACAATAAAAGCCATAATTTGATG GCTTTCTTTTTTCTTTGTAAAAAAAATAAGTAAAAGGGAATCCATACATGCCAGATATTTATATTTTGATAGGAGTACGT ACTTATGCAGGGCTGAAATATTTGTAGACAATTTATGTGACAATGTGAGGTAGTTGAGAGAGGAATTAAGGATTTGAGAC TTAATCTTGCAAGGAACTCTATAGACGAAGTTACGATACCATCCATCCTGTTTATGGTTATAAATCCCGAAGTTTCCTCT CAAACCAATACCTATATTTTCTTGCGTTTCGTTAATTTTAATTTCGTAATTAATAGTGCTGCTGTATGTATTTTTCTCTT ATGATAACTACCTGTTTTTATTTTGTCATTTTGCGCAAATAATATATTTCTCTCGGTTAGGCGAAGTTGCACTTGATTTA ACTGTATTTGAATCGCATCTTGTCACCCCAAAAGTGATTTTACTTTGACAATCCCATCACAGATTCTGGTTTATCGCACT AAAAGATAGGGAAACACGTTTTTCTTCATTGCTGTGGTTCATTTCTACAGGCAGCACATTTAGATATGAGTTCTCTGTTA TCAGTTTTTGGTACATCCTCATGTTATTCTCTTGTCATTTTTTGAAACCCCACGGTGGTTATTTCTAAAACTAGGACCAT AATATTTGGATAATCTTCCCCCTCTTCAAGAATTTGATGTTTTCTAATCTTGTTTGTGCAGTATTACTATGAGCCAGGCA CCGGAAAGAAGTTTCGCTCTTTGCTAGCTGTTCAGAGACATCTAGCAGGAGAACCAAAACACTATGTTACTCCAGAGAGA ATGATATCAGAAAATGAAGACAATGTGAGCTCTAATTATTTGTCTGTATCGTTTACACAAGCATGCCTCCTTAATCAAGT AGCAAATCGAATATAGTGAAATACATGTTTGGATTAGACATGATTATGCAATTCTCTAGGCTGTATCTCCAATTAAGTGC CCACACTGCTACAGATGCAGGTCATGACTCACACCAGGGATATTACATCATACATTAAGCTACCTAATGATGGGATTGTT AAGGAGAAACCTTATAACAGCAATAATTATGCTGGAGTTACAGACAACATATTTCTATGTTATCAAAAACATTGTTATCT TGGTTATATTATGATTTATAACTTTTCATGAAAAAAAACTTAGTTTGGTTTATATGACGGTAGGAAGAAAAAGCAATTGG ACTTAATTATTCAGGTTATAGTGCGGTTTTTGCTTTAATTTATATAAATGAAATTACACTCATTCTTGGTAATGAAAGAA TGACACTCACTGCAAAAGTCAAGAAATGAGGCAATATATAAACTCATTTTGGGATGCAGTAGCTCTAATCCTGCCCTGTT CCATTCATAGTAGAATCTCTCTCCATGATCATCTATGCTTTAGAAATGAGTTCTCTACATCTCACGGTATGAAAAGCTTG TTTGCTCACCACATCCTACCTAAACACTATAGTGTGGATGAACCACTCTTTCCTATCTAACTGTATTGATGTAAGAGTGT AATGACCAAATTGGCTGGGCGCGAGTGGGACACTAACTCTTTTACAATGTAAGCCCTCAACTGTTATAACCCTGGCTTTT AAGTTCTCAATTATTTTGGGTTTCGAATATGGATTTAATAGAAGCTTATTCGGCTCTTAGAAGACAGAAAATGGACAAGC ATTAAATTTGAAGTAAAATCTGCTATGGTATTTTTATTTTACCTGTCTTCAATGTAATATGCTCATTATTTGGCATGCGA AAATGGTTGGACTATCCTCTTACTATCATATGATTGCATACAAACTTTTCTTTGTCTTTGTTCTCTTTCAGCCAAATATT TTTCCTCCTGCTTTCCTCTGGCTATTATACGTGAAAATTTAGTGCACTTGATACAAACTAGCATTCAAAAGTTATGGTAT GCCACCTACTCCCCTCCATACCAAGCTACTTGCACCTCCAATGTACCAAAAAAGAAATGTACCTAAGTATTGGAAGTGTA AGTCTGAAAGAGAATGTGAAAAGATAGGAAAACAAGTTTTTCTCTGTTGCTATGATTCATTTCTGCAGTCAGCACATTAA GGTTTGAGTTCTCTGTTATTAGCTTTTGGTACATCCTCATGTTATTCTCCCTGTCATGGTTGAAACTCCACGGTGGTCAT TTCTAAAACCAGGACCATAATATTTGAATATTCTTTCCCTTGTGCAAAAATTTGATGTTTTTTAATCTTATTTGTGCAGT ATTACTATGAGCCAAGCACTGGAAAGAAGTATCGCTCTCTGCTAGCTGTTAAGAGACATCTAACAGAAGAAACAAAACAC TATGTTACTCCTGAGAGAATGATCTCAGAAAATAAAGACACTGTGAGTTCTAGTTTGTTGTTTTGTCTGTATCGTTTACA CAAGTATGCCTCTTTAATCAAGTAGCATATGGAATGTGGAATGATATTGAGAAGACAATGAAATCTACCTAAATAGTCAA ACAGTGCTTGGGGAGCAGATACTAGGAACATTTTCATGTTTAGGTTAGACATAATTATTGAAATTCCTAGGCTGTACCTC CAATTAGGTGCCCATACTTCTACAGGTGCAGGTTGACTCCCACCACCACCGGGGAAAATGAGTCATGCATTAAGCTACCT AATGATGGGATGGGATTGTTAAGGAGAATTGGAGAAACCCTATTGCAACAATAACTATGCTGGAGTTACAGACAGCATAT TTCTATGTTACCAAAGACATTGTTATCTGGGTTATGATTTATAAGTTTTCATAAATAAAGTTTAGTTTCATTTATAAGAC TGTAGGAAGAAAAAGAAATTGGACTTAATTATTCAGTTTCCTGACAATGAACCAAAATATATATCCTTTGGCTGCATGCA TGATTAGGTTATAGTGCAGTTTTTTCTTTGATGTATATAAATGAAATTACGCTCATTCTTGGTATGAAAGAATGAAAGTC ACTGCAAAAGTAAATAAATGAAAGACAACATAAAAACTCATGTTGGGATGCAGTAGCTCGAGTCCTGCCCAGTTCGATTT ATAGTAGAATCTCTCCTCCTATGATCAGCTATGGTCTACATCTCACAGTATCAAAGGCTTGTTTGCTCACCTCATCCTAC CTAACACGTGTGGATGAACCACTCTTTCCTATCTACCTGTGTAACTGTGTTGATGTAAGAGTGTAAGAACCAAATTAGCT GGCCGTGAGACACTGAACTCTCATTTACAATGGAAGCTGTCAACTCTTATCACCCTGGGGCCTGGCTTTTAGGTTCTCAA TTTTTTTGGGGTTTCAAATACGGATTTAATAGAAGCATGTTCTGCTCTTAGAAGACAGAAAATAAACATGCAATTAATTT GAAGTAAAAATCTGCTATGGTAATATTAATTTACCTGTCTTTAATGTAATTTACTCAACATTTGGCATGAGAAAATGACT AAACTATTCTGGAACCCAGAAGCTACTCACAGAAGCTTCTTCCCAGAATTGATTCTGCCTTTAGAGTCAATTGTGAGAGG AATTCCAACCATGCACTCAACTAATTGAATTTCTTTCTGAGCAGCCTACAAAAATTGATTCTCAGAGGAAATTCAATCTG AGGAAAGAAGACAGAGGATCCTCCCACAACTTAAGTAGACCACCAGAAAAAGTAAGTTGGGTTCTGTCTGGTCCTGGGGG CTTCTGGAGCCCTTTCGTGGATGGTACTATTGTACCAGAATCTGTAAAGTTGAAATGGTCCGAAGCATTTGTACAATCCA TCCATCATGGAGTTAGTAGTGGAGGACTTAATAGCTAAGGTAAGCAAGTAAGTTAAAACCACTTTCACGCCCTTAAAAGT ACAAAAATTCACTAGTTGATTCCATTCAACTTTGCAGGATATTCACATTGGAGATGACTGGACATAATGGTGAGCAATGT GCTGGCAGATGTAGCGTAGATTGTAAATCGGGTTATCTACTTGACTAATCTGTCAGCCATAAGCAGAGATTGTTCCATTT CACTGATTATAATGATGTAGTTTCTATCACCGTTTTTTGGGTTGCACCTGGTAAGGGGACAAGGACACTGGTGAAAGATT TTGATATCTCACCACTCTCTAATCCAGACTGGGAATAGTGCCAATTGAGCTATAAGCCCGTTGGCAGTAGCATTTTTGGC ACCAAAGAGGTAACTGTGCGGTAGTAATATAATAGTTTCTTAACTTTCTTCTATTTTTCTTGGTGTTCATATCTCATGCA GTCATGCTTATTAGAAGAAATAAAGCCAAACTAAAAGAAGAACGTAAACTGAAATAAAAAGTCTAGATAACAAAAGGAAG TGTCAAATGCAGCTGAAAAGAATGAGGCCCTTATTGATTGGTATAAAATGGATCATCAAAATTACATATTATAATAATAG CTTTGTTCATTTCGATTTTGTACAGTACTGACAGTTTGGTGGAGTAGGATTTATATTGTTTTGTTTAGTGTATGAAAAAG AAAGACTACAAAGATAATTTAATCGAATCATTCCTTAGGTAGACACTAGAATCTACTCTCAGATCACTTGGCATTTCACC TTCTTGGGGAGACTTTGAAGTCTGCGGGTTAGACCAATTTTTTTTCCAATAGATTCAACACATTTGGGAGAGAAGTCCTC ATCAAGAGACATTTACGAGGTATGAATCCCACACCAGTGATGTAAACTTTGCTTCAATATTCTTCTAGTTTTTCAATTTA ACATATAGAGGTTTTGCTGCACTGCAATGCCCCTGACCACATTGTCAAAGATCTCACAGATTTGACATCAGAAACTTCAA AATCTTGTTCCTTGCTGTAATTCGGCTTACACACACGCCCTCCTTTTGTTTCCGTGAAGGAAGCTCCATTTTCAAAAGCG TCACTCACAGAATGAAATTCCCACATATCCTCATTTGTGTTATTACCTTTTCTCCATGTTACCTACGCAAATTATATAAT TGGTTAAATACAAATCCCTTGACATTTTATTGATTGTGAGTCCATCTTTCATTAGTATATTATTAATTAGCTAGTTGTAA TTGAGTTGCGGAAATTGATTACCTCCTTACTCCCTGTTGTTGGTGCTATGAAGAGGTTAGCTTCACTTTTGAGGCTAGGT CCCATGCTTCCACCTATGGCATATTGCAACCATCCCTGGTAAAGATTATTGGCTACATGTGCATATCCATGGCGAATCCT GTAACATTTTTATAATTATTAATAAAAAGTTAAATAATACTGTCTAATAAATTTACATTTGTATTTTTTTAACTACATAA CTAAAAAAATACTTAGTTACCTTGGCATGCGTTGGTTGCAATTAGGTCCAAAATGGTTGTACACAACTGTAACCTTCATG TTCTGATCTCTTACATAGCCATCATCATGCCCGAGAAGCATAACCTTGTCCTGATTTCTAAACCAGTTGTTGGACACAGT CACATTAGTAGAACCCCGTGTGACATCAGGAAGGCCATCTTCGCAATCATAAAGTGTGTTATGATCAATCCAAATATTCG AAGCCGTAACTAGCCTGATTGCATCCCCATCTACTTGTCCCAAAGGAATAAGTTTTCCATTAGGCCCCATCACTAGTCCA GGGGCTTGAGCTTTACAATGATGAATCCTAATGCCATGTATGATTACGTTGGTAGCCTAGCAACAAATAAGTTGTAAGCT ATACGTAGGAAGTGGTAATCCATGAAAGTAGAGATTATAATGTTTGTTGTATAATTTTAACTAGTTGGGGTTGATGATTA CCTTATAGATCATCAAGCATGCATTATCAGCAATGTTGACGTTGACGCCTCGAGCATCAATGGTGGTGAAACTACTAATG AGAAGAGGTCTCTCGAGTCTAATCTGCATGTCTCTTT
CDS sequence (LotjaGi3g1v0280500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACACTGATGGTGTTCAAAAGGAACAGTTGAATCAGAACCCGAGCGGAAACGAGTTTCAGATTGTGCGGTTTAT GCCATTCCCAAACTTCAAGCTTCCCGATGATTGGGTGGTTGAGACTAAACCCCGTCCCTCTAAACCAACTCACATTGACA AGTATTACTATGAGCCAGGCACCGGAAAGAAGTTTCGCTCTTTGCTAGCTGTTCAGAGACATCTAGCAGGAGAACCAAAA CACTATGTTACTCCAGAGAGAATGATATCAGAAAATGAAGACAATTATTACTATGAGCCAAGCACTGGAAAGAAGTATCG CTCTCTGCTAGCTGTTAAGAGACATCTAACAGAAGAAACAAAACACTATGTTACTCCTGAGAGAATGATCTCAGAAAATA AAGACACTCCTACAAAAATTGATTCTCAGAGGAAATTCAATCTGAGGAAAGAAGACAGAGGATCCTCCCACAACTTAAGT AGACCACCAGAAAAAGTAAGTTGGGTTCTGTCTGGTCCTGGGGGCTTCTGGAGCCCTTTCGTGGATGGTACTATTGTACC AGAATCTGTAAAGTTGAAATGGTCCGAAGCATTTGTACAATCCATCCATCATGGAGTTAGTAGTGGAGGACTTAATAGCT AA
Protein sequence (LotjaGi3g1v0280500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADTDGVQKEQLNQNPSGNEFQIVRFMPFPNFKLPDDWVVETKPRPSKPTHIDKYYYEPGTGKKFRSLLAVQRHLAGEPK HYVTPERMISENEDNYYYEPSTGKKYRSLLAVKRHLTEETKHYVTPERMISENKDTPTKIDSQRKFNLRKEDRGSSHNLS RPPEKVSWVLSGPGGFWSPFVDGTIVPESVKLKWSEAFVQSIHHGVSSGGLNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| ProSiteProfiles | 24 | 96 | 73 | 10.816 | ||
| SUPERFAMILY | 25 | 85 | 61 | 4.9E-12 | ||
| Gene3D | 28 | 86 | 59 | 3.0E-12 | – | |
| PANTHER | 32 | 203 | 172 | 6.1E-37 | – | |
| PANTHER | 32 | 203 | 172 | 6.1E-37 | – | |
| Pfam | 34 | 78 | 45 | 1.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0280500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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