Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0282500 |
| Transcript ID | LotjaGi3g1v0282500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT3G55370.1 OBF-binding protein 3; Swiss-Prot: sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6; TrEMBL-Plants: tr|A0A0B2RMR4|A0A0B2RMR4_GLYSO Dof zinc finger protein DOF3.6; Found in the gene: LotjaGi3g1v0282500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56676126..56677741) extracted from Lotus japonicus Gifu genome v1.2.
AAATATAATAAAACAAAAAGAGATGAGAATGAGAGAACAAGCGCCTAGTAAACAAAATAAAGGCTCTTCTTGCTTTCCTC CTCTTTATTGCTCTTTTCCCTTTACTTTCTTGGCTCAGGACTCTTCCACTATAGAGTGATTCTCCACCATCTCCCTAAAG AGCCACCAAACTTTATTAAAGAGAAAACACAAGGCCAGATTGAACACCATGGTTTTCTCTTCTATTCCAGCATATTTAGA TCCTCCCCAGTGGCACCAAGTAAGGTTTTCTCAAATTTCAGCAAATTTTTCCAATCCCTAATTATTCCTATTCCTTTTAG TTAACATCTTCTTGAATATACCAGATTTTTTTCTTTTAAATACAACTCAAGAATTTCCATTTTTTCCACTTTGGATCTTT CTTTTTTCTTCTTTTCTATGGTTCTTAATTGATGATATATGTTTTGCAGCAACCAAATCAGCACCAAGCTAATGGCAATG ATGGCAGTCTTCATCACTTGCTTCCGCCACTAGCCCAACAGCAGCAGCATGCCCCTCATGTTGGAGGTGGTGGGGGAGGC TCAATCAGCTCAAGCCCGAGCCTGACAGCTGATCAGGCCCGGGCTCAAGCTCAGGCTCAGCTGGCTAAGATGGCACCACC ACCTGAAGCTCTAAAGTGTCCTCGTTGCGAATCCACCAACACAAAATTCTGCTACTTTAACAACTACAGCCTCTCGCAGC CCCGGCACTTCTGCAAGACCTGTAAGCGTTATTGGACAAGAGGGGGTGCTCTCAGGAATGTTCCTGTTGGTGGAGGATTC CGCCGGAACAAGAAGCACAAAAAGAGTAATAGCAGTAGTAGTAGCACCTCTGAATCTGACAAACAATCACTTTCCAATTC CACCACAAATGAGCTAAATATTCCAACTAACATGACCAGTACTCTTCAGAATCTGAGCTTCCATGGGGGAAACATGATCC AAGCACAGCACAATGGTTACATGGGGTTTCAAATTGGAGGTGGTCATGGTGGTTCTTCAACTTTAGAAGGTCCTGGAGTC GATCAATGGTGGCGGTTTCAGCAGTTTCCAAATATCTTGAATGGTTTTCATGAGTCAAGTACTACTTCAGCTGTTTCTTC ATTCCCATTGTTTCAAGGTGAAAGTGTTGAAGCTCATCCATCTGGTTTTGTTGGAGATGTTGGTGGTGTGGCTTCTAGGG TTCTGAATTCGTCAAGATCTCCTCTGACTATCTCAGAAAATATTAACCATCAGAATTCATGGACTGGTTTATCTTCTCTT GCACCTTCTTCTTCCGCTAGTCATCATTTCTTGTAATTTGTTTATGCTTTTAATTGCATTGAGTCAGTCAAGCTTCTTTG TGTACTCTTGAGCTTAATATCTTTGTATAACTGTTTGTCAGTTCGTGCATGTATTTTGTTTGTTTTTATCACTTATCAAT GGTTATGATATCATTTGGGAACACCAATATTTTCAGCCATGTTAATTTACTTACAATTTCCTTCTTCATTACGAAGAAAA AGTGATACAGTACGAAAGAACGCGCCACTACACAGTGACATTTATCGAGGCAATGCTGTTTCTGGGGATAAGCATGTTAC TTTGTTACAAATCTCA
CDS sequence (LotjaGi3g1v0282500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTCTCTTCTATTCCAGCATATTTAGATCCTCCCCAGTGGCACCAACAACCAAATCAGCACCAAGCTAATGGCAA TGATGGCAGTCTTCATCACTTGCTTCCGCCACTAGCCCAACAGCAGCAGCATGCCCCTCATGTTGGAGGTGGTGGGGGAG GCTCAATCAGCTCAAGCCCGAGCCTGACAGCTGATCAGGCCCGGGCTCAAGCTCAGGCTCAGCTGGCTAAGATGGCACCA CCACCTGAAGCTCTAAAGTGTCCTCGTTGCGAATCCACCAACACAAAATTCTGCTACTTTAACAACTACAGCCTCTCGCA GCCCCGGCACTTCTGCAAGACCTGTAAGCGTTATTGGACAAGAGGGGGTGCTCTCAGGAATGTTCCTGTTGGTGGAGGAT TCCGCCGGAACAAGAAGCACAAAAAGAGTAATAGCAGTAGTAGTAGCACCTCTGAATCTGACAAACAATCACTTTCCAAT TCCACCACAAATGAGCTAAATATTCCAACTAACATGACCAGTACTCTTCAGAATCTGAGCTTCCATGGGGGAAACATGAT CCAAGCACAGCACAATGGTTACATGGGGTTTCAAATTGGAGGTGGTCATGGTGGTTCTTCAACTTTAGAAGGTCCTGGAG TCGATCAATGGTGGCGGTTTCAGCAGTTTCCAAATATCTTGAATGGTTTTCATGAGTCAAGTACTACTTCAGCTGTTTCT TCATTCCCATTGTTTCAAGGTGAAAGTGTTGAAGCTCATCCATCTGGTTTTGTTGGAGATGTTGGTGGTGTGGCTTCTAG GGTTCTGAATTCGTCAAGATCTCCTCTGACTATCTCAGAAAATATTAACCATCAGAATTCATGGACTGGTTTATCTTCTC TTGCACCTTCTTCTTCCGCTAGTCATCATTTCTTGTAA
Protein sequence (LotjaGi3g1v0282500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFSSIPAYLDPPQWHQQPNQHQANGNDGSLHHLLPPLAQQQQHAPHVGGGGGGSISSSPSLTADQARAQAQAQLAKMAP PPEALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCKRYWTRGGALRNVPVGGGFRRNKKHKKSNSSSSSTSESDKQSLSN STTNELNIPTNMTSTLQNLSFHGGNMIQAQHNGYMGFQIGGGHGGSSTLEGPGVDQWWRFQQFPNILNGFHESSTTSAVS SFPLFQGESVEAHPSGFVGDVGGVASRVLNSSRSPLTISENINHQNSWTGLSSLAPSSSASHHFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 185 | 185 | 5.0E-63 | – | |
| PANTHER | 1 | 185 | 185 | 5.0E-63 | – | |
| MobiDBLite | 9 | 73 | 65 | - | – | |
| MobiDBLite | 14 | 28 | 15 | - | – | |
| MobiDBLite | 54 | 70 | 17 | - | – | |
| Pfam | 84 | 139 | 56 | 1.5E-32 | ||
| ProSiteProfiles | 85 | 139 | 55 | 28.956 | ||
| ProSitePatterns | 87 | 123 | 37 | - | ||
| MobiDBLite | 126 | 169 | 44 | - | – | |
| MobiDBLite | 144 | 169 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0282500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…