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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0284300 |
| Transcript ID | LotjaGi3g1v0284300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT1G07530.1 SCARECROW-like 14; Swiss-Prot: sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14; TrEMBL-Plants: tr|A0A1J7HCD4|A0A1J7HCD4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0284300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57354087..57356428) extracted from Lotus japonicus Gifu genome v1.2.
GAAAACAGTGTTGTCTGCTCAACGGTCAACTCGGTGGTCATAGAGTTGACCGAGATTTCAGCCACACAAGTTAAACTATC TAGATTAGCCACTCATATATATATTCAAGCCTCACTCACTCAACCAGTGTGCAACAAGCTAGTTAATTTCCCCTTTACCA ACCTCAAAATCTCTTATTTTCTCTTTATATAACAACCCAGTAATTCATAGATGGATGATGATAGAGTAGTTGATCCATCA CACTGTGCAGGAAAAAATTCTGCATATAGGGATGAAGGGTCTTGCTTGGGGGAGAATGAGAGTGAGAGTGATCAGTTTTC TTCTACCATCCTTAGCTACATAAACCAAACACTTATGGAAGAGGAGGACATGGAGGAGAAGTACAGCATGTTCCAAGATT CATTGGCTCTCAAACATGCTGAGAAATCACTTTATGAGGCTATTGGTCAGAAGTACCCTTCTTCTCCTCCTCCTCCTCCT CCTCCTCCTCCTCCTCCTACTCTTGACAACTACACCACCTTGGAGAGCCCTGATCAAAGTTTCTCTAGCAACTTCAGTGA TTATAGTTTTAGCAGTGACACTAGTTCTGGCACTACCAGTGGCTTTGAATTTGAATCAATAGAGTGCAACTCCTTTACAA TACCAACCACTCTTCCCATTCCCAGCACCACCCATTATTCCACCAACCATACAAGCTACTTCACTACAAACAATACTGGA TTGGGGCTTGATTCCGCATTGCTTAGCAAGAGTTATCTAGTGCAATTTGAGAGAGGTGTAGAGCAAGGAACCATGTTTCT CCCTGTGCAAACTCCATTCATTACTTACCATGACAACACTACCCTTTTCCCTTCTTTCACAAACCCTGCTCCTCATGGGG TAATTAAGTCAGAAAGCCATGAAGAGGAGCATTTTCTAGGGAGGAGACACAGGAAGCAGGAAGATGAAGATGAAGATGAA GCAGAAGAACAACATAGGAGAAGCACAAAGCGTTCAGAAGCGTACATAGATGACACTGAGTTATCAGAATTATTTGACAA GTTACTAGTTCAGGGAACAAGGTTGGGAAATAACTCATCTCCATACATGAGACAGGGTAAAACAGAAGAAGTTGTGAATC TGAGGACACTGTTGATGCAGTGTGCACAAGCTATTTCTTCTGATGATATTTCAACAGCTAAAAGTTTGTTGAAGCAGATT AAGCAGCATTCTTCTCCAATGGGCAATGGAACGCAGAGATTAGCCCATTACTTTGGAAATGCACTTGAAGCACGCTTGGC CGGAACTGGTTCACAGATTTATAGAATGTTATCCTCCAAAAGAACCTCTGCTGCAGACATGATAAGAGCTTACCAAGTGT ATTCCTTAGCATGCCCTTTTGAAAAACTTGCAATCATGTTTGCAAACAATTCAATTTGGAATAAGGCCAAGGACGTTGAA ACTCTTCACATTGTAGACTTTGGTATTGGTTACGGCTTCAAGTGGCCTGCTTTTATCCATCGTATATCAAAACGACCTGG TGGGTCACCAAAATTGCGCATCACAGGGATAGAGCTCCTTCAACCTGGTTTCAGGCCATTGCAGAGAGTCCATGAAACAG GGAAAAGACTTGCAAGCTATTGCAATCGTTTCAATGTTCCATTTGAATTCAATGCCATTGCACAGAGATGGGAAACCATC AAAGTTGAGGACTTGAAGATAAAGAAAAATGAGTTTCTAGCTGTGAATTGCCTGTTTCGCTCTGAGAAGCTGCTTGATGA GACAGTGGTGGAGGAAAATCCCAGGGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCTGGCATTTTTGTGCACGGCA TTGTTAATGGGTGCTATAATGCACCCTTCTTTTCGACACGGTTCAGGGAGGCTGTTTTTCATTACACAGCATTGTTTGAT GTGCTTGACACCAACCTTGCCCGTGAAGATCCAATGAGGTTGATGTTTGAGGAGGAGTTTTGTGGAAAGGAGGTGATGAA TGTTGTAGCTTGTGAAGGTTGTGAAAGGATTGAGAGGCCTGAGACATATAAGCAATGGCAGCTTAGGATCATGAGAAGTG GTTTTAGGCATCTTCCCTTGGATGACCAAATCATTAATAAGTTAAGGGGTAGGTTGAGAGATGATAAGTACAACAGTGAT ATCATACTTCAAGTGGATGGCAATTGGGTGTTACAAGGTTGGAAGGGACGAATTCTATATGCTTCTTCTTGTTGGGTACC TGCATAGGCATTCATAGTGTTGATTTTGCCTCCCAATTGTCCTTGGTGCTTAGGTTGTTCAAGCATGTTTACATTAGCTT TTTATAATTGATTTAAAAAAAA
CDS sequence (LotjaGi3g1v0284300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATGATAGAGTAGTTGATCCATCACACTGTGCAGGAAAAAATTCTGCATATAGGGATGAAGGGTCTTGCTTGGG GGAGAATGAGAGTGAGAGTGATCAGTTTTCTTCTACCATCCTTAGCTACATAAACCAAACACTTATGGAAGAGGAGGACA TGGAGGAGAAGTACAGCATGTTCCAAGATTCATTGGCTCTCAAACATGCTGAGAAATCACTTTATGAGGCTATTGGTCAG AAGTACCCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTACTCTTGACAACTACACCACCTTGGAGAGCCC TGATCAAAGTTTCTCTAGCAACTTCAGTGATTATAGTTTTAGCAGTGACACTAGTTCTGGCACTACCAGTGGCTTTGAAT TTGAATCAATAGAGTGCAACTCCTTTACAATACCAACCACTCTTCCCATTCCCAGCACCACCCATTATTCCACCAACCAT ACAAGCTACTTCACTACAAACAATACTGGATTGGGGCTTGATTCCGCATTGCTTAGCAAGAGTTATCTAGTGCAATTTGA GAGAGGTGTAGAGCAAGGAACCATGTTTCTCCCTGTGCAAACTCCATTCATTACTTACCATGACAACACTACCCTTTTCC CTTCTTTCACAAACCCTGCTCCTCATGGGGTAATTAAGTCAGAAAGCCATGAAGAGGAGCATTTTCTAGGGAGGAGACAC AGGAAGCAGGAAGATGAAGATGAAGATGAAGCAGAAGAACAACATAGGAGAAGCACAAAGCGTTCAGAAGCGTACATAGA TGACACTGAGTTATCAGAATTATTTGACAAGTTACTAGTTCAGGGAACAAGGTTGGGAAATAACTCATCTCCATACATGA GACAGGGTAAAACAGAAGAAGTTGTGAATCTGAGGACACTGTTGATGCAGTGTGCACAAGCTATTTCTTCTGATGATATT TCAACAGCTAAAAGTTTGTTGAAGCAGATTAAGCAGCATTCTTCTCCAATGGGCAATGGAACGCAGAGATTAGCCCATTA CTTTGGAAATGCACTTGAAGCACGCTTGGCCGGAACTGGTTCACAGATTTATAGAATGTTATCCTCCAAAAGAACCTCTG CTGCAGACATGATAAGAGCTTACCAAGTGTATTCCTTAGCATGCCCTTTTGAAAAACTTGCAATCATGTTTGCAAACAAT TCAATTTGGAATAAGGCCAAGGACGTTGAAACTCTTCACATTGTAGACTTTGGTATTGGTTACGGCTTCAAGTGGCCTGC TTTTATCCATCGTATATCAAAACGACCTGGTGGGTCACCAAAATTGCGCATCACAGGGATAGAGCTCCTTCAACCTGGTT TCAGGCCATTGCAGAGAGTCCATGAAACAGGGAAAAGACTTGCAAGCTATTGCAATCGTTTCAATGTTCCATTTGAATTC AATGCCATTGCACAGAGATGGGAAACCATCAAAGTTGAGGACTTGAAGATAAAGAAAAATGAGTTTCTAGCTGTGAATTG CCTGTTTCGCTCTGAGAAGCTGCTTGATGAGACAGTGGTGGAGGAAAATCCCAGGGGTGCTGTTTTGGATTTGATTAAGA AGGCAAATCCTGGCATTTTTGTGCACGGCATTGTTAATGGGTGCTATAATGCACCCTTCTTTTCGACACGGTTCAGGGAG GCTGTTTTTCATTACACAGCATTGTTTGATGTGCTTGACACCAACCTTGCCCGTGAAGATCCAATGAGGTTGATGTTTGA GGAGGAGTTTTGTGGAAAGGAGGTGATGAATGTTGTAGCTTGTGAAGGTTGTGAAAGGATTGAGAGGCCTGAGACATATA AGCAATGGCAGCTTAGGATCATGAGAAGTGGTTTTAGGCATCTTCCCTTGGATGACCAAATCATTAATAAGTTAAGGGGT AGGTTGAGAGATGATAAGTACAACAGTGATATCATACTTCAAGTGGATGGCAATTGGGTGTTACAAGGTTGGAAGGGACG AATTCTATATGCTTCTTCTTGTTGGGTACCTGCATAG
Protein sequence (LotjaGi3g1v0284300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDDRVVDPSHCAGKNSAYRDEGSCLGENESESDQFSSTILSYINQTLMEEEDMEEKYSMFQDSLALKHAEKSLYEAIGQ KYPSSPPPPPPPPPPPTLDNYTTLESPDQSFSSNFSDYSFSSDTSSGTTSGFEFESIECNSFTIPTTLPIPSTTHYSTNH TSYFTTNNTGLGLDSALLSKSYLVQFERGVEQGTMFLPVQTPFITYHDNTTLFPSFTNPAPHGVIKSESHEEEHFLGRRH RKQEDEDEDEAEEQHRRSTKRSEAYIDDTELSELFDKLLVQGTRLGNNSSPYMRQGKTEEVVNLRTLLMQCAQAISSDDI STAKSLLKQIKQHSSPMGNGTQRLAHYFGNALEARLAGTGSQIYRMLSSKRTSAADMIRAYQVYSLACPFEKLAIMFANN SIWNKAKDVETLHIVDFGIGYGFKWPAFIHRISKRPGGSPKLRITGIELLQPGFRPLQRVHETGKRLASYCNRFNVPFEF NAIAQRWETIKVEDLKIKKNEFLAVNCLFRSEKLLDETVVEENPRGAVLDLIKKANPGIFVHGIVNGCYNAPFFSTRFRE AVFHYTALFDVLDTNLAREDPMRLMFEEEFCGKEVMNVVACEGCERIERPETYKQWQLRIMRSGFRHLPLDDQIINKLRG RLRDDKYNSDIILQVDGNWVLQGWKGRILYASSCWVPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 34 | 678 | 645 | 7.5E-264 | – | |
| PANTHER | 34 | 678 | 645 | 7.5E-264 | – | |
| MobiDBLite | 79 | 110 | 32 | - | – | |
| MobiDBLite | 82 | 100 | 19 | - | – | |
| SUPERFAMILY | 86 | 411 | 326 | 2.14E-6 | – | |
| MobiDBLite | 219 | 263 | 45 | - | – | |
| MobiDBLite | 225 | 263 | 39 | - | – | |
| ProSiteProfiles | 295 | 676 | 382 | 84.626 | ||
| Pfam | 304 | 675 | 372 | 8.4E-109 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0284300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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