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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0290000 |
| Transcript ID | LotjaGi3g1v0290000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT2G42280.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q66GR3|BH130_ARATH Transcription factor bHLH130; TrEMBL-Plants: tr|I1MD93|I1MD93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0290000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:59203655..59207167) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTACAGCTAAAGTCATATCTCCACCCCTCTGATCACAACATTTAAAGGTGCTGCAGAAAGAGGTGTGTATTTGTTGT TTTTCTGTTCATGAGAGCTCTATTTTTCATATTTAAGAAAAAAAAATTATTATTACCAGTTTTCAATTTTGCAGCTTTTG CTTCTGCTAGTCTTTCCAGTTGAATTGATTGCTTGACTTTCAGAAACAGAAAACTCCTTGAAGAGAAAAAAAAAAAGCTA TTTTTTCCACCACATTTTGTTTATATATTTTTTAAATATTTGATAAAAATTTATTGATATTTTTATTACTTAGCTGCAAC TCACTACTTGTTCACAGTTCAGAATCCAAGTTAAAGTTCTGAGTTGTCAAAACTCTAGATCTGAGTGAGTGAAGAGTGCT AAATTTGATGAAGAAATTTCAATTTCAACTTCAACATGATTTGATGTGAAAAACACGCTAAGAAGAAGAACAAAGCAAGC TAGCTTCAATTCAATTCAATGGATTCAGATCTTCAGCAACAGCCACCACAGATGAATCCTTCACCTGGTTTAACACGGTA TCGATCAGCACCGAGTTCATATTTCTCCGACATCATCGACCGCGAATTCTACGAGCACATTTTCAACAAACCGTCAAGTC CCGAAACAGAGCGCGTCTTCTCACGGTTCATGAACAGTTTCAGCGGCGGTGATGGTGGTGGCGGCGCGACGGCGGAAGAG GATCATCCACTGAAAATCTCAGCAGATTCAGTGAAACGAGAGCAGGATCAACAGGGAATGAACAATGAAGTTCTACAGAG TAGTACTGAGATTATCAATGATTATGGCAACTCTGTTCCTCATTCTCAACAGAGCTTTTACCAAAGCGCGGTGAAACCAC CGTTGCCGAATCACTATCTTCAATCTGGTGGTGGTGGGAATGGCAATTCTGGTCTCATCAGACATAGTAGTTCACCTGCA GGACTGTTTTCTCAAATCAACATTGAAAATAGTAACTTCTCTGTCCACTTTATTCTGCTTTCAATTTTTTTTTGCTATTT TTGGTGAATTCTCCTTTTGTCTTACTTCTAGAGGGAGAAAAATGGGGTTAATTTTCCTGGAAAAGCATGAATTTCTAGAT TTTCTTGTGTGGAATTCTTGTTGCCCCTATTAAATAACTCTTTTAGGTAGCATACAATTTTAGTCTTTACTAATATGTGG ATATTATATTTTATATTTTGTACTTCAAGTTCCAACAAGTGAACAACTTGGTCAGGAAAAATAGAAAAACCTGATTGTGT TGGAACAGGTAGCTTGGGCTATTTGGGGGTATTAGGCTTCAATAAATTTGTCACATTCTTCATTTTTTATTTCCGGAGTC GCGTTCTGGCATCGAGAAGCTACTCGTATAAGCTTCTTCTTAGAATTGATTTTGACTTTAGAATCAATGGTAGAAGATTT TCCAAATATGCATGTATCATGAGTAGGTTTATAGGTTGTTTTAATGAGGTTATGAAAACTTTATTGGCAGTGGCAGGCTA TGCTGGTGTGAGGGGCATGGGAACTTTGGGAGCTGTTAAAAATTCTCTTGAAGGAGCTAAATTTTCTAGTGCAAGGAGGT TGAAGAACCAACCAAACTACTCCTCAGGGATGATGTCATCAATAGCTGAAATTGGGGACAGAGGCAATAGAGAAAATAAT CCAGACAGTGAAGCTTTTGCTGAAGGAATTGGTAATGATTTCATCACAGGTTTCCCAGTTGGTGCTTGGGATGACTCTGT AATGATGTCTGACAATGTTAGTGGTCTGAAAAGATTTAGAGATGATGATGATGCTAAACCATTTTCTGGTTTGAATGGAG CTGAGACTCGGGTAAAATATATACTCTTATCATGTTTGGATCAACTTATTTCTTCTCAGTATCAATTTTGTCACTCAGAA ACTACTCATAAAAGCTTCTCCCTATAATTGATTATTTCTTTAGAATGAAAATTGTAGATCGATTTAACATGCTATCTAAG GCATTGGTCTGATCTTGTGTATTATAATTCCCGATTGAAACGTCACTTGACATGATTTTATTGTGGTTGAACAGAATGAA ACAGGAGGACAGTCTTCTTCTTTGGTTCATCAGATGAGTATGCCAAATACTTCATCTGAAATGGCAGCTATTGAGAAGTT CCTGCATTTCTCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGCGGGGTTTTGCCACTCACCCCAGAAGCATTGCAGAGA GGGTACACTTTATTCTAGCCAAATATTTGTCCTTTTGCTTTCTTATTCTTAACTGGATTCCTGATTGATTACTAAGTATT CAATCTGATTTCCTACATCACTGTTCTTGATCTGGAAAGCAATCAAAGCATCAAATAATTTAGATACTCATAAGGCATGA TCATTGAGCAAGTGGTGGGTATATATCCACAATGTTGTTGGTTTCTTTCTTTCCAATTTTTTATGGATATATTTGCGGAA ATTGTCTTCAGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTGGTCCCAAACATGGACAAGGTA AGACTTTGACATAAAACACTGAGTGGATGTTCGATTTCATGATTTGCACTGAATCCAATGCATGTTTACTCAGAAGTTAA GACTTGTAACGTCTAACCAGAAGTGATTTTACCGTGGAAGCAAACATGCTATGAACTTGTATTGCATATACACCAAAGTG TTTGTGGATTATGGATGCCAGAGGCATAATGTTGTTTCGCTTCCTTTGCAGCAAACAAACACAGCAGACATGTTGGACTT GGCTGTGGATTACATCAAGGACCTTCAAAAGCAAGCTCAGGTATTTTAAAAACATGACCTATCTTAATTCTCAACCATGA CAAAATGTCATTTATCATTATGGATCATTTTACCCCTATCAGTCCCTTATTTTCTTCCCATATACATGCATGTTTAGACG CTTTCAGACTGTCAAGCAAAGTGTACATGTTCACACAAGCAGCAATAATAATGGCAAAGAGGGAGCTGCCAATCTCCCAT TGTTGACTTATGTTTAGTCTCTGTACAGATTTGTAATAATTTGGTTCAAAGAAGCTAGAATCTAGATTAGCTTTCCTCTG TTGCTGCACATGATAGAATTATTTGCCCCTTCTTGTATTAAAGAAAAGGGGATGAAGATAAATTTATTCAACGGTTGTTG AGGCAAGGAAGAAAATTGGTCTATGAAAAATTGAGTTTGATGGCATATAAGCCAAGCAGGTACAAAAGTCTTATGTCTTG TGTAAACGCATTCAAGCCTCAAATTAAGGGCATGAAAACTAGTGAACGATATGCTTCTTTCAAATTGAATGGCATAGGAC ACATGATGGGGCCCCGAAACAGACACAATTTTGTTGGTTATAAGATGGGCATGTGTGAGATTTTCACTTTCCTGTTTAAT GTGTGTTTGAACACTAGTTGAGTGTAATCCGAACAAACTTTCATATCAATTCATAAGAAGAGTTATGTTCAAT
CDS sequence (LotjaGi3g1v0290000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCAGATCTTCAGCAACAGCCACCACAGATGAATCCTTCACCTGGTTTAACACGGTATCGATCAGCACCGAGTTC ATATTTCTCCGACATCATCGACCGCGAATTCTACGAGCACATTTTCAACAAACCGTCAAGTCCCGAAACAGAGCGCGTCT TCTCACGGTTCATGAACAGTTTCAGCGGCGGTGATGGTGGTGGCGGCGCGACGGCGGAAGAGGATCATCCACTGAAAATC TCAGCAGATTCAGTGAAACGAGAGCAGGATCAACAGGGAATGAACAATGAAGTTCTACAGAGTAGTACTGAGATTATCAA TGATTATGGCAACTCTGTTCCTCATTCTCAACAGAGCTTTTACCAAAGCGCGGTGAAACCACCGTTGCCGAATCACTATC TTCAATCTGGTGGTGGTGGGAATGGCAATTCTGGTCTCATCAGACATAGTAGTTCACCTGCAGGACTGTTTTCTCAAATC AACATTGAAAATATGGCAGGCTATGCTGGTGTGAGGGGCATGGGAACTTTGGGAGCTGTTAAAAATTCTCTTGAAGGAGC TAAATTTTCTAGTGCAAGGAGGTTGAAGAACCAACCAAACTACTCCTCAGGGATGATGTCATCAATAGCTGAAATTGGGG ACAGAGGCAATAGAGAAAATAATCCAGACAGTGAAGCTTTTGCTGAAGGAATTGGTAATGATTTCATCACAGGTTTCCCA GTTGGTGCTTGGGATGACTCTGTAATGATGTCTGACAATGTTAGTGGTCTGAAAAGATTTAGAGATGATGATGATGCTAA ACCATTTTCTGGTTTGAATGGAGCTGAGACTCGGAATGAAACAGGAGGACAGTCTTCTTCTTTGGTTCATCAGATGAGTA TGCCAAATACTTCATCTGAAATGGCAGCTATTGAGAAGTTCCTGCATTTCTCAGATTCTGTTCCGTGCAAAATTCGTGCC AAGCGGGGTTTTGCCACTCACCCCAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACT ACAAGATCTGGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTGGATTACATCAAGGACC TTCAAAAGCAAGCTCAGACGCTTTCAGACTGTCAAGCAAAGTGTACATGTTCACACAAGCAGCAATAA
Protein sequence (LotjaGi3g1v0290000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSDLQQQPPQMNPSPGLTRYRSAPSSYFSDIIDREFYEHIFNKPSSPETERVFSRFMNSFSGGDGGGGATAEEDHPLKI SADSVKREQDQQGMNNEVLQSSTEIINDYGNSVPHSQQSFYQSAVKPPLPNHYLQSGGGGNGNSGLIRHSSSPAGLFSQI NIENMAGYAGVRGMGTLGAVKNSLEGAKFSSARRLKNQPNYSSGMMSSIAEIGDRGNRENNPDSEAFAEGIGNDFITGFP VGAWDDSVMMSDNVSGLKRFRDDDDAKPFSGLNGAETRNETGGQSSSLVHQMSMPNTSSEMAAIEKFLHFSDSVPCKIRA KRGFATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAQTLSDCQAKCTCSHKQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 12 | 392 | 381 | 7.1E-139 | – | |
| PANTHER | 12 | 392 | 381 | 7.1E-139 | – | |
| MobiDBLite | 259 | 289 | 31 | - | – | |
| MobiDBLite | 274 | 289 | 16 | - | – | |
| ProSiteProfiles | 324 | 374 | 51 | 15.307 | ||
| Gene3D | 326 | 388 | 63 | 2.3E-13 | ||
| SUPERFAMILY | 327 | 387 | 61 | 2.36E-16 | ||
| CDD | 328 | 379 | 52 | 2.78283E-13 | ||
| SMART | 330 | 380 | 51 | 7.8E-14 | ||
| Pfam | 330 | 375 | 46 | 6.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0290000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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