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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0295100 |
| Transcript ID | LotjaGi3g1v0295100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L18; TAIR: AT2G43310.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal; TrEMBL-Plants: tr|I1M555|I1M555_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0295100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:60761232..60770267) extracted from Lotus japonicus Gifu genome v1.2.
GTCTTTTTGCAGATTTAGAGATGGCTCACTTAGCAAAAAAAAAAAAAGGGGGCGCGAATAGTCTCTGCCTAAAAAAAAGG GTGTAACCATGAAATTGAGAAAGGTCTACGCGACTTCTTAAACTGTAAAACGCTGTCGTCTTGACTGCCCTGCGCCATGG CGGGCAACCACAACCACCACGTACTCCAGCTAGTGCTATCGTGCCGGCGAATCACCGCCCAGGTGACGAACACCACCACC TCATCCATCATAGCCATGGCCTCCTCTTCCGAGCACGAGTTCCTCGCCCACTACCGCGCCCACCTCAACCGCGTCCCAAG ATCCCACCGCTTCTGGGACGCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTAGGGTTCCGCCTCAGGGAAATCGGCGTCA CCGGTGTTCACATTGACCCTCGCGATGAGCTTTCGCGCCCCGTCCACTACCGCCTGATGGTTTCCCCCCTGTTCGATTCC ATCAAACGCGCCGGCGTCGAGGTCTCCGGCGTTGACGGTTTCCCTTTGTGCGTCACACCTTCCAATTGAATAGTAAGTTT TGACGATTCAAGAATTTTTCAATTTTTTTTGTGGCAATTCTTCATGCTGAATAAAATTTTGACTGAGCTTAGCTAGCTAC TATAATTTTGATGTTCAATTTTGTTGTTCTGCTGCATTACAGAAATTGGTGATTGCTGTTGTTGTTATTTGTTTTTGTAT CTATGATGTTCTTGCTTAAATTACAGAAATTACTGATGGTTGTTGTTATTATTAGTTTTTGTATCTAAGAATATGATGTT CCTGCTCAAATTAGTACCCGGAATAGTGTGAATTTCCATGAATTGATGCCTGTTAAAGTGGAATCTCTGAATTGTGACTA GCAGAAGTGTTCAGTGTCAAAAGGTTTGGTAGTATAGTAATGCCTAACCATAACACTGAGGCTACTGAATCATCATGCAC AATGTGTAAGAAAAAAAGTTAGGGAAAGGGTATGTTTTTAAGCAATAGTTCAAACTGTAAAATATATAGTGGCCAAATTA CTTAAAGTGTGAAATCATGAAAGATAGTCAAAGAGGTGAAATAGCAATGTTAATGAAACGGATTTCATGATTTTATTAAT ATCCTTTCTAGTTCATCTCCTGGATGCACCAACCATAAAACTATTTTCTTCAATCTTCTTGGTTGTCTTTCTCTCAACCA GTGAGTTCAAAGTTGTCAAAAGACCTGTTAAAATAGAGTCTTCAATTTACCACCAATTTAGAGTGGCCAAACTGACCCAA ACATCTATCAGGCATTGACAAGTGGCAATGGCTACTTGCATATTTGTAAATCCTGATTCTAAAGTCAAAATCTATTATGA GGGAAAATAAGCTAATCCAAACATGCTATATTTATGTGTTTGGTTCCGTGCTGGTACACATGTCTAAGGTATAAGCTACA AAGGAAAGCTTGTTACGGGATGTGATTTCGCAGCTAAAAATAAACGACTTTCCAAACACACTATACACAATCATATTTGC CTCCCGTATTCTCAAATTACCAAGAACTTCTTCCTCAATAATCACCAAGCAAACCTTTTGTATCATCAATTGTAGCAACC AAGCAAACCTTCTTTCCTCTAAACCTATGTCCTTCCCATTCATGCCCATCCTTATTGAATAGACATTGCTTCTTCATTGT TAATTCCTTAATTTGTCTTTTGTATTCCCTCCATCCAAAGTATCGAATCCTTAGATAGCACTGTCAGATAAAAGTAGCAT AAAATTTTGTAACATCCAATCAAAATTATTATCCTTTTGGATAAAGCGTGTTACATTTATTGCCATGATAAGTTTGGCTA ATTGATCAGGTAGGGGGTTGCCGTCAGTACTTAGATGATTAATTAAATTCCTACTAGTATTATATGATAGTGGTTTTGTC AAAACTATGGGAACCAAACATGCATTAAGTCACCTATGACCTCCATTGTGATCACATTTTCACATTATATCAATTTCAAG TTTCTTAACTTAAAATTTAAGTTCTCACGAGTTACATATATGCCTCCTTTTTGCTTCATTGTACCTTCACTCTTTCTATC AATTTCAAATTTCTTTTTTCAACTCTTTTTAATGTTCTTATTTTAATTCCTACTAACACCTATAGAAAACTAAAATTTAC CATCGGTTTAGTAGTTAAATATTCAATGGTTCTGATTTTAGATGTCTTACTGGTAGTAGGCATGCACAAAGAGACACAGA TCCAAGATATGGCAAATAAGGCATAAACTAAAGAAATACTATTGAATGAAAGATCATATAATTATTTAAAGTTTAACTTG ATTGATCTGTTTCATTACATCATTTATAGAACCACTAGGTACATACACTTTAATATCTTTTGAGAAAATTCCTGAACCAT TTTGCTGATAGCTTTTGGTACCTCTTCATACCATTTTTGTAATCCACGAAATTTATTCCAAACCGCACTGTGTAACCTGA AAACCATTCAAAATTGTCCAGCAATGACCATGCGAAATATCCTTTGACGTTTGCGCCATCCCTTTTATGTCAAAAACATG TGAAAGTATTAAGTTAAGTATTCAAAGTCTTATTTTTTAAATATATATTAAACAAGTACTCACCTTATTGCTGATTGGAG ATAAAAGAGATGGCGATAATAATAGTCAATTCTGAAAGTGTCCAAAAGAGCTTCCTCTAGTGATAGTGTTGGATCATTGA ACTCATCAATACCTACAAATTAAGTGCAATATGCAAAATCTAAATTCTTTGGTACATGATAATTAATATGTTAAAAAATC ATAGGTAAACATGCAAATTTATAATTATTGTATATTCTCTCTAATTATTCTATTCATTTGTGGGATTACAAATGTGAATT GTTTGGTGTATTTACCATTTTCAGTTATGTAAATTTGTGGGTTGTTGTACTTTTTCTTGACATAGAGCAACAGTTCTCGA ATTCCTTTTGGATAAACATATAACCAACTTGAAGCAGCCTGCAAATATGATTACAAACATAAGTTATATATACACTCAAA CAAATTAACATGGACATATAGCTACACTTTGTAATGGCCACATACATACCCTTGGGCCTATGGGAATCCCATTACGCTCA GCTGCCATCACAAAAACAAAAGGCATTTAATCTTTCAATTCAACTTATATAATAATTTAGAGAATTGATATACAAAAATG TTCTTACTTGTAAGATTGGTAAGAGCGTCTGTGACGTAATTGGGTCTAGCATTGCTTAGATGAGGTGCGTTGGCAGCATA ATTAGTGGTGTAATAATTCAGTCCAAGAAAATCAAATGAACCATTAACCAGCCTAGCTTGCTTCTTAGATAACTTTGGCA TTCTGCTTCCAACTAGGTAGCGCATACTTTGTGGATAGTTTCCTGTTGTCAATGGTTCCATGAACCTGCAATCATTGTTA CAGATGAAAATTACTTGACTTTAGAATCTCAATATTGTTCTCTTCTCCCTTTTGTGTGTGCATTTCTTTTTACCACTTAT GGTCATCATTCTAGCTATCACAAGCATACAACAAAGCATATATAGATGGCAGTAGACCCCTAGTGATTTTAAATTAGTCA TAGTCTACCACAATATATATTGATGCTAGTGGAAAATAAACACAATTTAAGATGGACTCTTATTTTAATACGTGAAAAAA GTTTATGTTTTTGTTAAGGAAGAAGAGATGGAGAAAGATGGGTTTGATGTACTCACAACCCACTCTCTTGATATAGTCTG CATACAACAAAGCATATATAGATGGCAGTAGACCCCTAGTGATTTTAAATTAGTCATAGTCTACCACAATATATATTGAT GCTAGTGGAAAATAAACACAATTTAAGTTGGACTCTTATTTTAATACGTGAAAAAAGTTTGTTTTTGTTAAGGAAGAAGA GATGGAGAAAGATGGGTTTGATGTACTCACAACCCACTGTCTTGATATAGTCTGCACATGCTTGCTTCTCTTCTCTTTGT TGTTGGTGGGGTGGTTGTGGTGATTTAGGCTATGGTGTGGGCCAAGATGGGAACATTGGAGGCTCAGGGGTTTGCGTTAA GTTTGCTAGACGTGGGGCTTACTATCCCACCGCAGGTGACGCGATGGGCTTCGATGGCAGTTGAAATGACGACGGGGGAC AAATCTGGTGGTGGTGGTGGTGGGTTTCTTGTGATGTGAGCGTTGATTGTGTCGGAACGATTGGGGTCAATGGTGTAGGT GGGGGGAAAGTGAACGTCGTGATGACTGGGTATGAGGGTGCGATTATCCTTGGAGGCGGTGCAGGCGAGGAGGCTGAGAG CGTTGGTGTCGAGGTGGTGATGGTGGTGGCAGCGACGGTGGTGGCGAGGATGCGGTGACTGGATATGATTCCGGTGAGAA CAAAGTGCGGAAATACTTCACAAGCGAGGTATTCTATTGAAATTTCGAAAACCCTTAAATGTTGGGGAAATATGTCTATT ACTCTTAATTGTTTGGGAGCATATGGTGCAATACATTTCTTGCTGACACACATTAGATTGCACCCAGACTGGAGAAAGAT AGAGATAAAAGAGAGAGAAATGAGAGGTATGGTAGATGATGTGACAGGAAATTAAGAGAAATGTAAGGAGAGAAAATGAG TGGTGTTGAGATGGAAGAGAATGTGAGGTGTCAATAAATCAAAACCCATACATGAAAAGAGTAAATGTACGAAAAGAGTA AATATATGGATCTGACCTAAGGTTTAACACCTAAAGAAAGATACTGAGGTCTATGTTAGACCTATGATTTTGAATAGGAA TGACAAACTCCATTCTGACATATATTATTTGAATGGAGCTATTAATAAAGAACAATGGCATGTGGTGTTCAAGTTAATTA ACTTGTATAATTAGATGAAATTGCTCAAAGTTAATAATCTCATTCTTTCCTTTATTACCGAAAATAAGAAGGAAAATATA AACATAATACTAACTCTAACTAGCCTTACTGCCTTACCACATACCATCATAATACTGACAAATAGAGTTTCTAATGTAAA GCTAAGCACTTACCATCCAAACATGAAGTCAATTGCTCTTCCAGCAGCGTCTTGATCAAATTTGTTATCTGAAAATGGCA CGAACCAATGAGACACCAATGTTATTCCTATGATACCTTTCTGAGATGCCTGTGTAGAGAGTTTGGGTAGTTGGATAAAG TTAGAACATGATTCATAACAGTATAGAAGCCTAAACTTAAGCTATAAAGTTGTCAAAGTTATAATGAACCTGATACTTTT TCTTGTACACTTGAACAGCTTCTGCATGAGCAAGAAGTTGGTGATGTGAAACCAAATAGGGCTCTTTACCTGAATCATCA CCACCAGTACAATTTGGATTCAGCCATATAGAACATCGACCTGGTGCTAGAATCCCAACTGCATAGCCACCCATGCTATA AGACAATGGTTCATTCAAAGTAATCCAATGCTTCACCCTATCTCCAAATTTCTTGAAACAAAGCTCCGCGTAGTCTCGAA AATCATGCCTGAAAATCAATCATGAATTATGACATGTTAAATTTGAAAATCAATCATGCAGAGGCATGGGTGATGCATAA CATTTTTGTATGTTTACTTTTATAATAGCTTAATTTGGGTGGAAATTGAATTTTGGATCACTCACATAACGTGATGACTT AAGAAGCCACCATACTCATCTTCCAAAGCTTGGGGCAGGTCCCAATGAAAAAGTGTTACGAATGGTTGTAGACCTGTAGT GATAACAATCAATTAATCATGTTAATTTGTTATCTATTCTTTATAGGAATATTTTAAAATGCCAATTTTGAAGTTCAATT TTAACCATTAGCTAGCAGCTCGTTGATGAGATTGTTGTAATATTTGATTCCTTCTTGGTTGACACCTCCACTGAGCTTTC CTTCTATGGGTAGATTCATTGTGAGAAAATATAAAATTGTTAATGTGAAATATCCATCTAAGCAAAATTAATAAATAGGA ACTGAGAGTTGTTTCAAAAAAAGAGTTAATAATTAAATATTATACTCACTTGGGAGGATTCTTGACCAGGAGATTGAAAA TCTGTAAGCATCCAAATTCATATACTTCATGATCCCAACATCTTCCTGTGATATTCAAGTGCACTAATTAAGTTATCATT TTATATTAAACAAAAGCATCATTTCTAGGGATATGTTGAAGATTGCTTTTATTTACTTATTGTATTTCCTTTATTATAGT TTATTGGATGTATATGCCACTTACTAATGAAAGACTCTGTTACTTATATAATTAATTATTGTTTTGAGGAGGAAACTTTC GTTGATTATTTCTTGTCGTCATTTGAAAATTTCAACCATACCCTGTAGTGGTGATATTCATCAACTGCGACATCTCCACT GCTTCTATCTAGTATGTGATCTGCATGAAAAGAAAATGATTGATTCATACCCAAATTTTGAAAACTACCTTTATGCCTTA TCTTTTGAAGTAGAAAGGAAGAAACTTAAACTAAGTTATATATGTGAAAATAACCAATCATAGTCTGAGTTCAAGAAGAA AAAAATGAATGATACTCCCTCTAATTGTTTTAAGTGTCATTTTAGAAGAAAATCTTACTTCTATTATGTGAAGTTAAAGA TAGAATAATTTTTTTCAATTATATCATTATCTTTCCAAATTAATTAATTACTAAAAAAGTATTAAAAATAAATAAAAAAT TAAATGAAGATTTTGATATACACATAATCTTAAAGATAAAACTTAGACAAGGATGGATGAATTAATTATCAGGGTCTGTG CAAATTTATATTCCCTCCTTTGTTACTAAATATAATTGCATTAAAACCGTTCTTAAGGAACGGAGAGAGTAATTTAGTGT GTGCCTGTTTTATCATTTCCCATTTTGATGTCACATTTAGTGCATGTTTGGATTGATATTCTGGGCCTTGAAAACAGCAA AACAAACACACTAGCCTTATTTACGGATGAACTCTCATCAATGGTTAAATTATAATGTCCCCGAAGGATAGCTCAAGTGG TAAGAGCTAGGACATAAGGGTTGGGTGGGGTGATGGTGAAGGGTCCCGGGTTCGAACCCGGAGGAGGGATTCATTTACTA ACATTTCTAACAACTAACATTTGCCTATCAGAAAAAAAAAAAAAAAAAAAACCACAAAACATGATCGACAACTTTCAGTC CAGGATCTTTAAATGAAATTGTTCTCTCAGATGGAGACAAATACACAGCTAAAATCACTGTGCTGATAAATTAATTGGTG CAATTCTTTATTGCGATAAAGTTCATGATAAGATTCCCTGAGAAACATTTTATTTGACGTTAGATATGTCATGCTTTTTT TTGGGTAGAGAAATGCAATAGCCATGCTTAGTATTAGCTGTTAAATTATTTGTTTGAATAATCATGCAATAATAATGATT TTTGTATACATTATTTTGAATACATTTAAATACCATTCTCAAATATAATTGTTAATATAAATAACAATACCTTCAAAGTA TAAATTCAGTAATTAAAACAAATACAGAAGATTTTTCTCTTTTTTTAATTTTTTTTATTAATAAATAAGAGATGAGGAAG AAAAAATAAAACAGGGATCATGTTTTGCTTCTTGTTGGTTGCATGTTGGAGAGAGAATCGGAGACAGATAGATTACCTGG ATGTTTGTGGGTGTAGGTGTCCCATATACTTGCTCCTCTACCACCTTCTTTTGCCGCACCTTCATGCTGCATATACATAA CATAAGCACACAAAATTAATTATTAAACGAATGTGATTTTTACTGCAGAATCTTAATTTAAGGGTAGTCACAACCAAGGG GTTAAAGTAAACAAAAGAAGAAAGATTACCTCCATAATGCGTGTTTGCATAAACGGTAAAAAATTAGAGTAAGACAAAAA TACAGTGGATATAAGCAATTTTCTTTAGTTTATGTGTTGTATTTTGTATCCAAACATATGGATAGCTAATTCAAACATTA TACTTGTTATGAACACAAAAAAAAGATATTTGCTTATTCATTATTTATATTAAATCAATTTTCATTAGGACTGATTTTTA GATTCAAATAGTGTACTCAAAGATGAAGACCTTCTCATGTGAAAATTTTCAAATGTTCTTGTATATTGAAATTTTGCATA TATATGATATGAGGATCCTAATCCGTTTACAAAGTACCTGGTATGATGAGGATGCTGTCCCAAAAGTGAAGCCTGACGGA AAACTGCTTCGATTGAGTGAAGCAACATCAAGAATGGGAGGAACAACTTCTGCAAAAGTAACCGATGGTAATGTGCAGAG AAGAAGATTGAAGAGGGGAAGAAGGAAAACTAATAAGGTGTTGAGTGTCATATCATATGAATGTGATGAACAATGAGTAT TTCAGCTAGATATGCAGAGCATTTATATGAAGATGTGGCCCTTAATAAAACAAAAACTTGCTAACTAAAGTCTGAGTCCA GATCAGCTTGAACGTTACTAGTGAAGACATAGACAAACATGAATGTGCATGCCGTGGAAAAGGGCAGAGTTTTGTTTTGT TTTTTTTATCTTTTTTTAGGTCCTTAAATTTCTATGAAGAATTAATTTTTTTTTATGAAACTTATGAAGAATTAAATTTA GTTCCAAAAAAATTTCTTTAAATGTTAACTCTTCTCTTTGAGAAATTTTGAAATCCAATTAAGTTATTGTGCCTGCGTTT CATCATTTTTGACCAGTCAACCGAACCGTCCACACGATGAGCTTAGTCAGCTGAAGGTGACCACACTGACTTTTTAAGAT GATAGAGGTTTAGGGTTTTTTCTTCTTTGATGAGATTGACTGGGAAGAGATTAAGGAAGAGGGGGTGGTGGTGGAAGAAG GAGGAATATGATGAAGATTAAGGAGATTGAATTTCCTAGTTTTTTATTTCTAGAAATGCATGAGCTATGGAGGAAGAAGA TGAAGGTGGAAGAGGAAGGACTAAGGTAGCGTTTGGTGACGGAACGGAACATGACAAAACAGAACGGAACGGGACA
CDS sequence (LotjaGi3g1v0295100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGCAACCACAACCACCACGTACTCCAGCTAGTGCTATCGTGCCGGCGAATCACCGCCCAGGTGACGAACACCAC CACCTCATCCATCATAGCCATGGCCTCCTCTTCCGAGCACGAGTTCCTCGCCCACTACCGCGCCCACCTCAACCGCGTCC CAAGATCCCACCGCTTCTGGGACGCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTAGGGTTCCGCCTCAGGGAAATCGGC GTCACCGGTGTTCACATTGACCCTCGCGATGAGCTTTCGCGCCCCGTCCACTACCGCCTGATGGTTTCCCCCCTGTTCGA TTCCATCAAACGCGCCGGCGTCGAGGTCTCCGGCGTTGACGGTTTCCCTTTGTGCGTCACACCTTCCAATTGA
Protein sequence (LotjaGi3g1v0295100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNHNHHVLQLVLSCRRITAQVTNTTTSSIIAMASSSEHEFLAHYRAHLNRVPRSHRFWDAKVASRVGEKLGFRLREIG VTGVHIDPRDELSRPVHYRLMVSPLFDSIKRAGVEVSGVDGFPLCVTPSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 122 | 122 | 2.4E-49 | – | |
| PANTHER | 1 | 122 | 122 | 2.4E-49 | ||
| Gene3D | 2 | 115 | 114 | 3.6E-9 | – | |
| SUPERFAMILY | 3 | 92 | 90 | 1.44E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi3g1v0295100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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