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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005484
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.648s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0123729.1
n.a. Ribosomal L.8/L5e family protein isoform 3 [Theobroma cacao] gi|508718711|gb|EOY10608.1| chr0 55504047 55506855 -
2 domain predictions
3 GO terms
Lj1g3v0084880.1
n.a. 50S ribosomal protein L18 [Medicago truncatula] gi|357480871|ref|XP_003610721.1| chr1 757137 759953 +
2 domain predictions
3 GO terms
Lj1g3v3906710.1
n.a. 50S ribosomal protein L18 [Medicago truncatula] gi|357480871|ref|XP_003610721.1| chr1 45564546 45566236 +
2 domain predictions
3 GO terms
Lj2g3v0636820.1
n.a. PREDICTED: 50S ribosomal protein L18-like [Brachypodium distachyon] gi|357129656|ref|XP_003566477.1| chr2 10343899 10351555 -
2 domain predictions
3 GO terms
Lj2g3v1277770.1
n.a. PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Cicer arietinum] gi|502093842|ref|XP_004490070.1| chr2 20449215 20451179 +
2 domain predictions
3 GO terms
Lj2g3v3339040.1
n.a. PREDICTED: 50S ribosomal protein L18-like [Brachypodium distachyon] gi|357129656|ref|XP_003566477.1| chr2 42561171 42563077 +
2 domain predictions
3 GO terms
Lj3g3v0642480.1
n.a. 50S ribosomal protein L18 [Medicago truncatula] gi|357508357|ref|XP_003624467.1| chr3 6905702 6911535 -
2 domain predictions
3 GO terms
Lj3g3v2737550.1
n.a. PREDICTED: 50S ribosomal protein L18-like isoform X1 [Cicer arietinum] gi|502121199|ref|XP_004497221.1| chr3 33826020 33826793 -
2 domain predictions
3 GO terms
Lj3g3v3765530.1
n.a. Ribosomal L18p/L5e family protein [Theobroma cacao] gi|508709821|gb|EOY01718.1| chr3 45571485 45572335 -
2 domain predictions
3 GO terms
Lj6g3v1137450.1
n.a. 50S ribosomal protein L18 [Medicago truncatula] gi|357450229|ref|XP_003595391.1| chr6 13931789 13934545 +
2 domain predictions
3 GO terms
LotjaGi1g1v0007400.1
n.a. 50S ribosomal protein L18; TAIR: AT5G27820.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18; TrEMBL-Plants: tr|I3SBB6|I3SBB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0007400 LjG1.1_chr1 1032146 1034523 -
3 domain predictions
3 GO terms
LotjaGi1g1v0007400.2
n.a. 50S ribosomal protein L18; TAIR: AT5G27820.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18; TrEMBL-Plants: tr|I3SBB6|I3SBB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0007400 LjG1.1_chr1 1032420 1032764 -
3 domain predictions
3 GO terms
LotjaGi1g1v0007400.3
n.a. 50S ribosomal protein L18; TAIR: AT5G27820.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18; TrEMBL-Plants: tr|I3SBB6|I3SBB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0007400 LjG1.1_chr1 1032420 1032941 -
3 domain predictions
3 GO terms
LotjaGi2g1v0191300.1
n.a. 50S ribosomal protein L18; TAIR: AT5G27820.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18; TrEMBL-Plants: tr|I3SBB6|I3SBB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0191300 LjG1.1_chr2 62278651 62281125 -
3 domain predictions
3 GO terms
LotjaGi2g1v0191300.2
n.a. 50S ribosomal protein L18; TAIR: AT5G27820.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18; TrEMBL-Plants: tr|I3SBB6|I3SBB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0191300 LjG1.1_chr2 62278653 62281151 -
3 domain predictions
3 GO terms
LotjaGi2g1v0191300.3
n.a. 50S ribosomal protein L18; TAIR: AT5G27820.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18; TrEMBL-Plants: tr|I3SBB6|I3SBB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0191300 LjG1.1_chr2 62278958 62279302 -
3 domain predictions
3 GO terms
LotjaGi2g1v0191300.4
n.a. 50S ribosomal protein L18; TAIR: AT5G27820.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18; TrEMBL-Plants: tr|I3SBB6|I3SBB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0191300 LjG1.1_chr2 62278958 62279462 -
3 domain predictions
3 GO terms
LotjaGi2g1v0302700.1
n.a. 50S ribosomal L18-like protein; TAIR: AT1G14205.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q9SX68|RK18_ARATH 50S ribosomal protein L18, chloroplastic; TrEMBL-Plants: tr|I3SBQ6|I3SBQ6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0302700 LjG1.1_chr2 77677301 77679653 +
3 domain predictions
3 GO terms
LotjaGi2g1v0455400.1
n.a. 50S ribosomal protein L18; TAIR: AT3G22450.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A9BCN2|RL18_PROM4 50S ribosomal protein L18; TrEMBL-Plants: tr|A0A151T420|A0A151T420_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0455400 LjG1.1_chr2 94850615 94853634 -
3 domain predictions
3 GO terms
LotjaGi3g1v0074400.1
n.a. 50S ribosomal L18-like protein; TAIR: AT3G45020.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q4FUE0|RL18_PSYA2 50S ribosomal protein L18; TrEMBL-Plants: tr|I3S5F8|I3S5F8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0074400 LjG1.1_chr3 8187553 8194089 -
3 domain predictions
3 GO terms
LotjaGi3g1v0074400.2
n.a. 50S ribosomal L18-like protein; TAIR: AT3G45020.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q4FUE0|RL18_PSYA2 50S ribosomal protein L18; TrEMBL-Plants: tr|I3S5F8|I3S5F8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0074400 LjG1.1_chr3 8187827 8193972 -
3 domain predictions
3 GO terms
LotjaGi3g1v0074400.3
n.a. 50S ribosomal L18-like protein; TAIR: AT3G45020.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q4FUE0|RL18_PSYA2 50S ribosomal protein L18; TrEMBL-Plants: tr|I3S5F8|I3S5F8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0074400 LjG1.1_chr3 8188091 8188477 -
3 domain predictions
3 GO terms
LotjaGi3g1v0105800.1
n.a. 50S ribosomal L18; TAIR: AT1G08845.2 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q1MIC5|RL18_RHIL3 50S ribosomal protein L18; TrEMBL-Plants: tr|A0A0I9RJ76|A0A0I9RJ76_LOTJA L18 ribosomal protein Heart Stopper; Found in the gene: LotjaGi3g1v0105800 LjG1.1_chr3 13109636 13115434 -
3 domain predictions
3 GO terms
LotjaGi3g1v0105800.2
n.a. 50S ribosomal L18; TAIR: AT1G08845.2 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q1MIC5|RL18_RHIL3 50S ribosomal protein L18; TrEMBL-Plants: tr|A0A0I9RJ76|A0A0I9RJ76_LOTJA L18 ribosomal protein Heart Stopper; Found in the gene: LotjaGi3g1v0105800 LjG1.1_chr3 13109788 13111806 -
3 domain predictions
3 GO terms
LotjaGi3g1v0295100.1
n.a. 50S ribosomal protein L18; TAIR: AT2G43310.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal; TrEMBL-Plants: tr|I1M555|I1M555_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0295100 LjG1.1_chr3 60761232 60770267 -
2 domain predictions
3 GO terms
LotjaGi3g1v0295100.2
n.a. 50S ribosomal protein L18; TAIR: AT2G43310.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal; TrEMBL-Plants: tr|I1M555|I1M555_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0295100 LjG1.1_chr3 60761726 60770162 -
2 domain predictions
3 GO terms
LotjaGi3g1v0435100.1
n.a. 50S ribosomal protein L18; TAIR: AT5G27820.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18; TrEMBL-Plants: tr|A0A067E776|A0A067E776_CITSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0435100 LjG1.1_chr3 84654691 84656992 -
3 domain predictions
3 GO terms
LotjaGi3g1v0435100.2
n.a. 50S ribosomal protein L18; TAIR: AT5G27820.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18; TrEMBL-Plants: tr|A0A067E776|A0A067E776_CITSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0435100 LjG1.1_chr3 84656218 84656591 -
3 domain predictions
3 GO terms
LotjaGi4g1v0153400.2
n.a. 50S ribosomal L18; TAIR: AT1G08845.2 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q1MIC5|RL18_RHIL3 50S ribosomal protein L18; TrEMBL-Plants: tr|A0A0I9QQ14|A0A0I9QQ14_MEDSA L18 ribosomal protein Heart Stopper; Found in the gene: LotjaGi4g1v0153400 LjG1.1_chr4 25580211 25584039 -
3 domain predictions
3 GO terms
LotjaGi5g1v0082400.1
n.a. 50S ribosomal L18-like protein; TAIR: AT3G45020.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q2RQX6|RL18_RHORT 50S ribosomal protein L18; TrEMBL-Plants: tr|A0A072VK45|A0A072VK45_MEDTR 50S ribosomal L18-like protein; Found in the gene: LotjaGi5g1v0082400 LjG1.1_chr5 13701823 13705466 +
3 domain predictions
3 GO terms
LotjaGi6g1v0218600.1
n.a. 50S ribosomal protein L18; TAIR: AT1G48350.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q9SX68|RK18_ARATH 50S ribosomal protein L18, chloroplastic; TrEMBL-Plants: tr|I3S3Z8|I3S3Z8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0218600 LjG1.1_chr6 52079560 52082970 +
3 domain predictions
3 GO terms