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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0295100 |
| Transcript ID | LotjaGi3g1v0295100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L18; TAIR: AT2G43310.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal; TrEMBL-Plants: tr|I1M555|I1M555_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0295100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:60761726..60770162) extracted from Lotus japonicus Gifu genome v1.2.
CTACGCGACTTCTTAAACTGTAAAACGCTGTCGTCTTGACTGCCCTGCGCCATGGCGGGCAACCACAACCACCACGTACT CCAGCTAGTGCTATCGTGCCGGCGAATCACCGCCCAGGTGACGAACACCACCACCTCATCCATCATAGCCATGGCCTCCT CTTCCGAGCACGAGTTCCTCGCCCACTACCGCGCCCACCTCAACCGCGTCCCAAGATCCCACCGCTTCTGGGACGCCAAA GTCGCCTCTCGCGTCGGCGAAAAGCTAGGGTTCCGCCTCAGGGAAATCGGCGTCACCGGTGTTCACATTGACCCTCGCGA TGAGCTTTCGCGCCCCGTCCACTACCGCCTGATGGTTTCCCCCCTGTTCGATTCCATCAAACGCGCCGGCGTCGAGGTCT CCGGCGTTGACGGTTTCCCTTTGTGCGTCACACCTTCCAATTGAATAGTAAGTTTTGACGATTCAAGAATTTTTCAATTT TTTTTGTGGCAATTCTTCATGCTGAATAAAATTTTGACTGAGCTTAGCTAGCTACTATAATTTTGATGTTCAATTTTGTT GTTCTGCTGCATTACAGAAATTGGTGATTGCTGTTGTTGTTATTTGTTTTTGTATCTATGATGTTCTTGCTTAAATTACA GAAATTACTGATGGTTGTTGTTATTATTAGTTTTTGTATCTAAGAATATGATGTTCCTGCTCAAATTAGTACCCGGAATA GTGTGAATTTCCATGAATTGATGCCTGTTAAAGTGGAATCTCTGAATTGTGACTAGCAGAAGTGTTCAGTGTCAAAAGGT TTGGTAGTATAGTAATGCCTAACCATAACACTGAGGCTACTGAATCATCATGCACAATGTGTAAGAAAAAAAGTTAGGGA AAGGGTATGTTTTTAAGCAATAGTTCAAACTGTAAAATATATAGTGGCCAAATTACTTAAAGTGTGAAATCATGAAAGAT AGTCAAAGAGGTGAAATAGCAATGTTAATGAAACGGATTTCATGATTTTATTAATATCCTTTCTAGTTCATCTCCTGGAT GCACCAACCATAAAACTATTTTCTTCAATCTTCTTGGTTGTCTTTCTCTCAACCAGTGAGTTCAAAGTTGTCAAAAGACC TGTTAAAATAGAGTCTTCAATTTACCACCAATTTAGAGTGGCCAAACTGACCCAAACATCTATCAGGCATTGACAAGTGG CAATGGCTACTTGCATATTTGTAAATCCTGATTCTAAAGTCAAAATCTATTATGAGGGAAAATAAGCTAATCCAAACATG CTATATTTATGTGTTTGGTTCCGTGCTGGTACACATGTCTAAGGTATAAGCTACAAAGGAAAGCTTGTTACGGGATGTGA TTTCGCAGCTAAAAATAAACGACTTTCCAAACACACTATACACAATCATATTTGCCTCCCGTATTCTCAAATTACCAAGA ACTTCTTCCTCAATAATCACCAAGCAAACCTTTTGTATCATCAATTGTAGCAACCAAGCAAACCTTCTTTCCTCTAAACC TATGTCCTTCCCATTCATGCCCATCCTTATTGAATAGACATTGCTTCTTCATTGTTAATTCCTTAATTTGTCTTTTGTAT TCCCTCCATCCAAAGTATCGAATCCTTAGATAGCACTGTCAGATAAAAGTAGCATAAAATTTTGTAACATCCAATCAAAA TTATTATCCTTTTGGATAAAGCGTGTTACATTTATTGCCATGATAAGTTTGGCTAATTGATCAGGTAGGGGGTTGCCGTC AGTACTTAGATGATTAATTAAATTCCTACTAGTATTATATGATAGTGGTTTTGTCAAAACTATGGGAACCAAACATGCAT TAAGTCACCTATGACCTCCATTGTGATCACATTTTCACATTATATCAATTTCAAGTTTCTTAACTTAAAATTTAAGTTCT CACGAGTTACATATATGCCTCCTTTTTGCTTCATTGTACCTTCACTCTTTCTATCAATTTCAAATTTCTTTTTTCAACTC TTTTTAATGTTCTTATTTTAATTCCTACTAACACCTATAGAAAACTAAAATTTACCATCGGTTTAGTAGTTAAATATTCA ATGGTTCTGATTTTAGATGTCTTACTGGTAGTAGGCATGCACAAAGAGACACAGATCCAAGATATGGCAAATAAGGCATA AACTAAAGAAATACTATTGAATGAAAGATCATATAATTATTTAAAGTTTAACTTGATTGATCTGTTTCATTACATCATTT ATAGAACCACTAGGTACATACACTTTAATATCTTTTGAGAAAATTCCTGAACCATTTTGCTGATAGCTTTTGGTACCTCT TCATACCATTTTTGTAATCCACGAAATTTATTCCAAACCGCACTGTGTAACCTGAAAACCATTCAAAATTGTCCAGCAAT GACCATGCGAAATATCCTTTGACGTTTGCGCCATCCCTTTTATGTCAAAAACATGTGAAAGTATTAAGTTAAGTATTCAA AGTCTTATTTTTTAAATATATATTAAACAAGTACTCACCTTATTGCTGATTGGAGATAAAAGAGATGGCGATAATAATAG TCAATTCTGAAAGTGTCCAAAAGAGCTTCCTCTAGTGATAGTGTTGGATCATTGAACTCATCAATACCTACAAATTAAGT GCAATATGCAAAATCTAAATTCTTTGGTACATGATAATTAATATGTTAAAAAATCATAGGTAAACATGCAAATTTATAAT TATTGTATATTCTCTCTAATTATTCTATTCATTTGTGGGATTACAAATGTGAATTGTTTGGTGTATTTACCATTTTCAGT TATGTAAATTTGTGGGTTGTTGTACTTTTTCTTGACATAGAGCAACAGTTCTCGAATTCCTTTTGGATAAACATATAACC AACTTGAAGCAGCCTGCAAATATGATTACAAACATAAGTTATATATACACTCAAACAAATTAACATGGACATATAGCTAC ACTTTGTAATGGCCACATACATACCCTTGGGCCTATGGGAATCCCATTACGCTCAGCTGCCATCACAAAAACAAAAGGCA TTTAATCTTTCAATTCAACTTATATAATAATTTAGAGAATTGATATACAAAAATGTTCTTACTTGTAAGATTGGTAAGAG CGTCTGTGACGTAATTGGGTCTAGCATTGCTTAGATGAGGTGCGTTGGCAGCATAATTAGTGGTGTAATAATTCAGTCCA AGAAAATCAAATGAACCATTAACCAGCCTAGCTTGCTTCTTAGATAACTTTGGCATTCTGCTTCCAACTAGGTAGCGCAT ACTTTGTGGATAGTTTCCTGTTGTCAATGGTTCCATGAACCTGCAATCATTGTTACAGATGAAAATTACTTGACTTTAGA ATCTCAATATTGTTCTCTTCTCCCTTTTGTGTGTGCATTTCTTTTTACCACTTATGGTCATCATTCTAGCTATCACAAGC ATACAACAAAGCATATATAGATGGCAGTAGACCCCTAGTGATTTTAAATTAGTCATAGTCTACCACAATATATATTGATG CTAGTGGAAAATAAACACAATTTAAGATGGACTCTTATTTTAATACGTGAAAAAAGTTTATGTTTTTGTTAAGGAAGAAG AGATGGAGAAAGATGGGTTTGATGTACTCACAACCCACTCTCTTGATATAGTCTGCATACAACAAAGCATATATAGATGG CAGTAGACCCCTAGTGATTTTAAATTAGTCATAGTCTACCACAATATATATTGATGCTAGTGGAAAATAAACACAATTTA AGTTGGACTCTTATTTTAATACGTGAAAAAAGTTTGTTTTTGTTAAGGAAGAAGAGATGGAGAAAGATGGGTTTGATGTA CTCACAACCCACTGTCTTGATATAGTCTGCACATGCTTGCTTCTCTTCTCTTTGTTGTTGGTGGGGTGGTTGTGGTGATT TAGGCTATGGTGTGGGCCAAGATGGGAACATTGGAGGCTCAGGGGTTTGCGTTAAGTTTGCTAGACGTGGGGCTTACTAT CCCACCGCAGGTGACGCGATGGGCTTCGATGGCAGTTGAAATGACGACGGGGGACAAATCTGGTGGTGGTGGTGGTGGGT TTCTTGTGATGTGAGCGTTGATTGTGTCGGAACGATTGGGGTCAATGGTGTAGGTGGGGGGAAAGTGAACGTCGTGATGA CTGGGTATGAGGGTGCGATTATCCTTGGAGGCGGTGCAGGCGAGGAGGCTGAGAGCGTTGGTGTCGAGGTGGTGATGGTG GTGGCAGCGACGGTGGTGGCGAGGATGCGGTGACTGGATATGATTCCGGTGAGAACAAAGTGCGGAAATACTTCACAAGC GAGGTATTCTATTGAAATTTCGAAAACCCTTAAATGTTGGGGAAATATGTCTATTACTCTTAATTGTTTGGGAGCATATG GTGCAATACATTTCTTGCTGACACACATTAGATTGCACCCAGACTGGAGAAAGATAGAGATAAAAGAGAGAGAAATGAGA GGTATGGTAGATGATGTGACAGGAAATTAAGAGAAATGTAAGGAGAGAAAATGAGTGGTGTTGAGATGGAAGAGAATGTG AGGTGTCAATAAATCAAAACCCATACATGAAAAGAGTAAATGTACGAAAAGAGTAAATATATGGATCTGACCTAAGGTTT AACACCTAAAGAAAGATACTGAGGTCTATGTTAGACCTATGATTTTGAATAGGAATGACAAACTCCATTCTGACATATAT TATTTGAATGGAGCTATTAATAAAGAACAATGGCATGTGGTGTTCAAGTTAATTAACTTGTATAATTAGATGAAATTGCT CAAAGTTAATAATCTCATTCTTTCCTTTATTACCGAAAATAAGAAGGAAAATATAAACATAATACTAACTCTAACTAGCC TTACTGCCTTACCACATACCATCATAATACTGACAAATAGAGTTTCTAATGTAAAGCTAAGCACTTACCATCCAAACATG AAGTCAATTGCTCTTCCAGCAGCGTCTTGATCAAATTTGTTATCTGAAAATGGCACGAACCAATGAGACACCAATGTTAT TCCTATGATACCTTTCTGAGATGCCTGTGTAGAGAGTTTGGGTAGTTGGATAAAGTTAGAACATGATTCATAACAGTATA GAAGCCTAAACTTAAGCTATAAAGTTGTCAAAGTTATAATGAACCTGATACTTTTTCTTGTACACTTGAACAGCTTCTGC ATGAGCAAGAAGTTGGTGATGTGAAACCAAATAGGGCTCTTTACCTGAATCATCACCACCAGTACAATTTGGATTCAGCC ATATAGAACATCGACCTGGTGCTAGAATCCCAACTGCATAGCCACCCATGCTATAAGACAATGGTTCATTCAAAGTAATC CAATGCTTCACCCTATCTCCAAATTTCTTGAAACAAAGCTCCGCGTAGTCTCGAAAATCATGCCTGAAAATCAATCATGA ATTATGACATGTTAAATTTGAAAATCAATCATGCAGAGGCATGGGTGATGCATAACATTTTTGTATGTTTACTTTTATAA TAGCTTAATTTGGGTGGAAATTGAATTTTGGATCACTCACATAACGTGATGACTTAAGAAGCCACCATACTCATCTTCCA AAGCTTGGGGCAGGTCCCAATGAAAAAGTGTTACGAATGGTTGTAGACCTGTAGTGATAACAATCAATTAATCATGTTAA TTTGTTATCTATTCTTTATAGGAATATTTTAAAATGCCAATTTTGAAGTTCAATTTTAACCATTAGCTAGCAGCTCGTTG ATGAGATTGTTGTAATATTTGATTCCTTCTTGGTTGACACCTCCACTGAGCTTTCCTTCTATGGGTAGATTCATTGTGAG AAAATATAAAATTGTTAATGTGAAATATCCATCTAAGCAAAATTAATAAATAGGAACTGAGAGTTGTTTCAAAAAAAGAG TTAATAATTAAATATTATACTCACTTGGGAGGATTCTTGACCAGGAGATTGAAAATCTGTAAGCATCCAAATTCATATAC TTCATGATCCCAACATCTTCCTGTGATATTCAAGTGCACTAATTAAGTTATCATTTTATATTAAACAAAAGCATCATTTC TAGGGATATGTTGAAGATTGCTTTTATTTACTTATTGTATTTCCTTTATTATAGTTTATTGGATGTATATGCCACTTACT AATGAAAGACTCTGTTACTTATATAATTAATTATTGTTTTGAGGAGGAAACTTTCGTTGATTATTTCTTGTCGTCATTTG AAAATTTCAACCATACCCTGTAGTGGTGATATTCATCAACTGCGACATCTCCACTGCTTCTATCTAGTATGTGATCTGCA TGAAAAGAAAATGATTGATTCATACCCAAATTTTGAAAACTACCTTTATGCCTTATCTTTTGAAGTAGAAAGGAAGAAAC TTAAACTAAGTTATATATGTGAAAATAACCAATCATAGTCTGAGTTCAAGAAGAAAAAAATGAATGATACTCCCTCTAAT TGTTTTAAGTGTCATTTTAGAAGAAAATCTTACTTCTATTATGTGAAGTTAAAGATAGAATAATTTTTTTCAATTATATC ATTATCTTTCCAAATTAATTAATTACTAAAAAAGTATTAAAAATAAATAAAAAATTAAATGAAGATTTTGATATACACAT AATCTTAAAGATAAAACTTAGACAAGGATGGATGAATTAATTATCAGGGTCTGTGCAAATTTATATTCCCTCCTTTGTTA CTAAATATAATTGCATTAAAACCGTTCTTAAGGAACGGAGAGAGTAATTTAGTGTGTGCCTGTTTTATCATTTCCCATTT TGATGTCACATTTAGTGCATGTTTGGATTGATATTCTGGGCCTTGAAAACAGCAAAACAAACACACTAGCCTTATTTACG GATGAACTCTCATCAATGGTTAAATTATAATGTCCCCGAAGGATAGCTCAAGTGGTAAGAGCTAGGACATAAGGGTTGGG TGGGGTGATGGTGAAGGGTCCCGGGTTCGAACCCGGAGGAGGGATTCATTTACTAACATTTCTAACAACTAACATTTGCC TATCAGAAAAAAAAAAAAAAAAAAAACCACAAAACATGATCGACAACTTTCAGTCCAGGATCTTTAAATGAAATTGTTCT CTCAGATGGAGACAAATACACAGCTAAAATCACTGTGCTGATAAATTAATTGGTGCAATTCTTTATTGCGATAAAGTTCA TGATAAGATTCCCTGAGAAACATTTTATTTGACGTTAGATATGTCATGCTTTTTTTTGGGTAGAGAAATGCAATAGCCAT GCTTAGTATTAGCTGTTAAATTATTTGTTTGAATAATCATGCAATAATAATGATTTTTGTATACATTATTTTGAATACAT TTAAATACCATTCTCAAATATAATTGTTAATATAAATAACAATACCTTCAAAGTATAAATTCAGTAATTAAAACAAATAC AGAAGATTTTTCTCTTTTTTTAATTTTTTTTATTAATAAATAAGAGATGAGGAAGAAAAAATAAAACAGGGATCATGTTT TGCTTCTTGTTGGTTGCATGTTGGAGAGAGAATCGGAGACAGATAGATTACCTGGATGTTTGTGGGTGTAGGTGTCCCAT ATACTTGCTCCTCTACCACCTTCTTTTGCCGCACCTTCATGCTGCATATACATAACATAAGCACACAAAATTAATTATTA AACGAATGTGATTTTTACTGCAGAATCTTAATTTAAGGGTAGTCACAACCAAGGGGTTAAAGTAAACAAAAGAAGAAAGA TTACCTCCATAATGCGTGTTTGCATAAACGGTAAAAAATTAGAGTAAGACAAAAATACAGTGGATATAAGCAATTTTCTT TAGTTTATGTGTTGTATTTTGTATCCAAACATATGGATAGCTAATTCAAACATTATACTTGTTATGAACACAAAAAAAAG ATATTTGCTTATTCATTATTTATATTAAATCAATTTTCATTAGGACTGATTTTTAGATTCAAATAGTGTACTCAAAGATG AAGACCTTCTCATGTGAAAATTTTCAAATGTTCTTGTATATTGAAATTTTGCATATATATGATATGAGGATCCTAATCCG TTTACAAAGTACCTGGTATGATGAGGATGCTGTCCCAAAAGTGAAGCCTGACGGAAAACTGCTTCGATTGAGTGAAGCAA CATCAAGAATGGGAGGAACAACTTCTGCAAAAGTAACCGATGGTAATGTGCAGAGAAGAAGATTGAAGAGGGGAAGAAGG AAAACTAATAAGGTGTTGAGTGTCATATCATATGAATGTGATGAACAATGAGTATTTCAGCTAGATATGCAGAGCATTTA TATGAAGATGTGGCCCTTAATAAAACAAAAACTTGCTAACTAAAGTCTGAGTCCAGATCAGCTTGAACGTTACTAGTGAA GACATAGACAAACATGAATGTGCATGCCGTGGAAAAG
CDS sequence (LotjaGi3g1v0295100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGCAACCACAACCACCACGTACTCCAGCTAGTGCTATCGTGCCGGCGAATCACCGCCCAGGTGACGAACACCAC CACCTCATCCATCATAGCCATGGCCTCCTCTTCCGAGCACGAGTTCCTCGCCCACTACCGCGCCCACCTCAACCGCGTCC CAAGATCCCACCGCTTCTGGGACGCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTAGGGTTCCGCCTCAGGGAAATCGGC GTCACCGGTGTTCACATTGACCCTCGCGATGAGCTTTCGCGCCCCGTCCACTACCGCCTGATGGTTTCCCCCCTGTTCGA TTCCATCAAACGCGCCGGCGTCGAGGTCTCCGGCGTTGACGGTTTCCCTTTGTGCGTCACACCTTCCAATTGA
Protein sequence (LotjaGi3g1v0295100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNHNHHVLQLVLSCRRITAQVTNTTTSSIIAMASSSEHEFLAHYRAHLNRVPRSHRFWDAKVASRVGEKLGFRLREIG VTGVHIDPRDELSRPVHYRLMVSPLFDSIKRAGVEVSGVDGFPLCVTPSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 122 | 122 | 2.4E-49 | – | |
| PANTHER | 1 | 122 | 122 | 2.4E-49 | ||
| Gene3D | 2 | 115 | 114 | 3.6E-9 | – | |
| SUPERFAMILY | 3 | 92 | 90 | 1.44E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi3g1v0295100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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