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LotjaGi3g1v0302800.1

Overview

Field Value
Gene ID LotjaGi3g1v0302800
Transcript ID LotjaGi3g1v0302800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|K7MCW2|K7MCW2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0302800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:63201186..63210202) extracted from Lotus japonicus Gifu genome v1.2.

AATCGAACACACAAGTTTCTAAAAAGAAGTTACATGTCATAGCGAAATGGGCCATGTGTTGCCTCACCCCAGGGTTTCCT GATTAGCTACCCTACCTCCCTCCTAGAAATAGTACTTTAATGAAATGTAAAAGGGAGATTTGAAAGTGTATGTTTATTCT TTTTTAGGCAAGTAAACAGTTTGTTTCCCATGGTTTTGGGTTTTGTTGTTGCACCATCTAGCATCACTTTTCGGCTCCTG TCTATCCCATGTAACTGTCCAGGTTCCAGTTGAGGCATGTTCCAGGTTACAGATCCCTCTATCAAGCTTTTTGGAAGCGA TATTCACATCCAAACTCCTATTAACTCAGCACATATTGCAGATTCAAATTCTCCCACTCAGATTCAGCCTCTGCCTCAAC CCATCACCATGGTCATGTCATTCAAACTTTCCATTTTATTCTTTCATTCTCCTTCTCATTGGGGTGCTCATTTTCTTTTC TTGTTCAAGTTTTCAGCAAAGTTTGCATTTTTATGGAAATTTATTTGCCTATCTGAAATGGGTACTCATCATCATCCTGA GTGGAACTCCTGTGTGTGTGGAAGCCCTGTGTGAAAATTAAACTCCTTTCTTTTTGTGTAAATGGTAGGAAAACAATTTT AATTTTTTGGCGATATTTGGTATGCATATTGCAAGCTTATTCTTTTGTAATGAATATTTGGATGTGGTTTGATAATTTGT TCTGAAGGTGAGACATGAGTATTTTTTGGGTGGATTTGTGTGAGGTGCTAGAGAAAATAAGTGGTGGGATTTAATTTGAA TCAATGGGTTGGAATCTGGTTTTTACTAGGACTGAATTTATAAACAGTAGTGGACACCATGGAATTTGAAATGAGACCAA ATTATGTGATGCCCTTTGTGGTGGGTACTGTGTTCTATCAACTATAGCAAACTAGCAATGGAATATGGATAGAGGTTTGG GTAAAATAAGGTTTCTTGTTCTTTTTCTCTGTTATGTTAGGAGTTAAAGGTCAACGGCTTTTTCAACTTGATTCTTGATG CCTCATTTTGTTTTTTTTTCATCTACTGTTCATCATTTGCTAGGGCATAACCATAAGATATTGAGATGCATATTTATTGA CAGCCTTTGCATTCTGTCATAGGGTTATAACTTTTAGTCCTAAGGCAAGTTGTCGATTCATAGCATGTTTGGAACTTTGG ATCAGGTTATTTTTTCTTAGAATCAATTATGATTTAAAAGAAACCCTTAGAAGCTCATTCCCATAATTGATTCTGGCTTT AAAATCAGTTGTTGAAGGATATCCAAACATGTTATCAATGTATGCCTAGCTGAAACTGTTTGATTCTCCATTGCAGAACG GAATTGAAAAATCAACTAGTGCTGAAGAGAATATTCCAATGGACGAAGCATGTACCAAAGTAGTTCATAGGACTAATGAA CACAGAACTGATACAAGAGATTTTGATCAAGAAAAAGTTCTCAAGAAGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAA TAGTTTGGAAACGAAGTTTTGCTACTTCAACAATTACAATGTCAACCAACCTCGGCATTTCTGCAAAAACTGCCAGAGAT ATTGGACAGCTGGGGGAACAATTCGAAACGTTCCTGTAGGAGCCGGTAAGCGCAAAAACAAGCACTCACATTTGCATTAT TATCAGGTTGCTGTGACTCCTGATGATGCAGTACATGGCATGCACACAGATCCAAACCCTGCTAGTAGTGATATGCATCT CTTGCCTGTTACTTCAAGACCTTTTAAAGAAGCTCCTCTTAGTGAATCCCTTGAAACTATGTTAAATCTCAAGGGCCACA CAAAAATTGAAGTGGATTCTTCTACTGTCAAAGATGATTGTGAGGTCCCTTCTAGCTCTTCTGTGAGATCTGTTGAATCC ATGGAGAAAGAATGCTCAGAAAATGGGATCGAGCAAGTTGGTTTAATTCCTTTACATCCACTTCATTATTATCCTGTTCC TCCATGGGCTTATCAATGGAATCCCTGTTGGAATGCAATGGCTTTTAGGCCTAGTAGCATAGCTTCCAGTTACATGAGTT CAGCAACCATGATAGCAATTCCTGGCTTCTCCACACCAACAGTAGAATTACCAGTATCTCCTTCTTCATACTGGGGTTGC ATGCCAAGCTGGGCTGAACAAAAGGACGAGTCTTCATTGGTTGGATCTACATTCAGTGGCATTCCATCACCTTCATCTTC AGTTAGCAACAGTACTTGTTCTGGCAATAGGTCCCCAACCTTGGGAAAACATTCTAGAGATGGAAGTACTGCAGCAGAAG ACACAGTGAATCAGAATCTTTGGGTACCTAAGACTGTGAGAATTCATGATCCAGAAGAGGCTGCAAAGAGTTCTATATGG ACAACTTTGGCAACAAAGTCTAAACTGAACAAACCAATTATGAAAGGAAGTGTTTTCAAATCATTTGAACCTATGTCAAA TGGAAGTTCTCATGTTTTAGAGGATAATCAGATTCTAAGGGCAAACCCTGCTGCTTTCTCCCGTTCTGAATCTTTTCAGG AAAGCTTGTAAAGTTCTGTGTTTATTCCAGCTTTAGGTTGAGTTCAGCTCAACCATGTCATAAAAGAGGATTTCTGCTAG TCCTTTTCTGTCATGGCTAATTCTGTATTAAGTCTTTAGAAGATAGCCATGAGAAGAACCTTGAAGTGTTTTTAAGCTAT TATGTTCTCTGGTTAGTAAGAATCCCAATCTTGTGGCAATAAGACTTGTGCCTTTGCACTTCAAGTTCGTTACCATAAAG AAAGGGAGCCATGGCAGTTCATGAAATTCTGACTGAGGTAGTTGTACTAAAGACTTGTGCCTTTATTCTTTTTGTTCATT AGTTGACTAATTTCTTGTTTTTCTTCATTATATGTTTCCTTTGATCAATATCTATAGTTTACCTTCATCATATGATTGTA CATCTAAATTTACAGTTCATTTGCTTAAACATTATAGGTGTAACTTCCAAATAACTTCAACTTTTTCTATTACATCACCC CAAAGGTGAGTAAAGTCTATTAATTAAGTGTTCTCTATCAGCAATCAAACTTCAGCATAAAGTTTTCTACAATGATCTAG TTATTACTATTCTTGTAATAGGCAAAGCCAAAGGTAAATTTCTGAATTTTGTACTTAACTCTGTTGTTTTGGAGGGTGGA AAATTAGGGAATAGTGATGCTAAGATTATGATCAAATATATTTACTTTAAACCCATGCGACGATACACTGTTAGTTTAAG CCACTACATGGTTCATTGGCTTTTTTATTGATACATTCGTGGTATTGCCTTTTTTTTTGTCGAGGATGAACATCCCAAAG CATAAAACAAGCCCAAAGACACTACAATGCAACAGGGCCAGCAAAAATTGTCTCGTGGTATTGCCTCATCCATGCAAGCT TGTGAGGCTATACCTTTAATTTTTGGGGGTAAAAGGCTACACCTTGTTGTTTAACAAAATCATTCTTGTTATTAAGTGTT ATTATTGTTTAACTTTCTTTCTGAGTTTGTTTGCTTGAGTAGACCCTCCCCAAGAAAATGAAGTGTAGAATTTGAGTATA AAGTCTTTCGGCCTAAATGAGCCGATTATTATTGGGTTGAGGTCCTACTTAGACACATTGAAGTACAAGACCATGCAAGT TAGTTATGCCACCAAGCTGAAGCGAGTTAGGCTCTTTAAGCAATGGTTAGGAGGTAGGTCATGCTACATGGGCAAGTCAG ACCCTTTAATCATGCCCATCGGGCTCCACTGTGCTTATCCACTACACCACCACAACAACACCCCGCACCTTGCCGGTCAC CACCAGGCTTGCTCTGGAAGATCAGATTCAAATCTATTTTCCATCAAAATTAAAGTTGAAGTACTAACCGGATGAGTGTT AAATAAAACAGGGAAAATTTTGGGCACACTTATTGAATTCTAATGTTGCTCATGCGATCTGTATAAAACTAAATTTTTTA CATGGTAGAATACACACTATTAGTTCCTGGAAATTTCATACAAATCTTATATCTCCCTGGAGGATGGTACAGGCGAGTCT CTGTGATCTATCTCCGTGGACGATGGTACAGGTGAGTATCTGTGATCATTTGAGTCTCTTTTCCATGTATTTTGAACTTG TGCTGCAAACTGCAAATTCCAGAGAACATCTTCCACAGAAGGCCTAACAGTTGGTTCACTAGAGAGACATCTTACACATA TCTCCATCATTGTCATTAATGATTCATCAGAACATTCCTTATGAACTGCTGGGTCAACAATACTTCTCCTAGCTATATCA TCAGTTTTGATGCTTACCTGTAACTGTTTAAGAACCACACATGCACATTGTTAGCATTTGGGTTCTGTAAATTGGGTCAT TATTGAGAAAAATTGCTACAAGTAGCTCAAAGTCAGATTGGGAAATTTATTCACAACATTGTGTAAAAAGTTTGAGTCAG AAATTTTAGGTAATACTCACAAGATCTTTTAGTGTTCCAACTTCATTATGGAACATTATTGGTCGTCCCAGAATGATTTC TAGTAAAATTGCCCCAATATCATAGACATCATTCTTGTCTGCATCTTTTAGCCTGCAGAAATAACGCAATCACATTAACT AATGCCAATTGAAAAGAACTCATTATTATAGGCAATCAGCAAGGTATCCTTTGGAAAAGGTTCTGTAACTTCTCTAAATG ATTGTAGACATTGAAATGTGAAACCGCTCAGAACCAGGGTAAACAGGTTTGGCTGTTGAAGGTAGTTGAAGAAGTCAGGT GTTTCACCCACAACTCTTCATATTAGAGATACCAAAAGAGCAGTTAGCATTAGAAGCAGATATATATGGATGAGGATTGA AATTTAACTGAGGTTCATGAAATTTAAGGTAGAACTAATAAAATTCTTACCTAATTCAATAAGTTATACATTTTTTCCAA CACTCAAAAGAAAGCATAAGCTAAAATGCATGCCACATGGAACTGAAGTCAAATGAGCTATCGTTTAACAAAAAAACAAT ACTGACAAACAAAAGCCTTTTCCCCCACTAGGTGAGTTTGGGTATATGGATGAAATGATACTGTAATGTTATGTCATAGG TTATGTTTAGTGATAGACCATTTAAATCTTATTCCTTCTTATTCACATGACCTATAGTTTTCCTTCTTTTCTCTCTACAT TGATAGTGAACCTCTTTGTAAAAACATTTAATTATGTGTTGTGCTCAATTTGCTATATAATCCAAAGAGTAGTTCCAACT TAGCAACACTTTTTGAGAGTTTAGGAAATGAAAATTCATACTTACTCAGTTTCTAATTCTATTGCAATATCAGGGATATA TAAATTTTATTTTTACCTTGCTTGGAGATTTCCTTTTAATCCAGGGGAAGTTCCATTGCTGACCTGAAAGTTTGGAAGTA AACAAATTATAAAAATTTACCAATTACCAGTGAAGTTATAGTACTAGCAAGAGCATATATAAACACATTTTATCCATTTA CCATTTTCTTATTTTCAACAGAGAGTGGCAGATTGTAGCTGCTTATTTTAACGTTATGATTGCTATCTAGAAGAATATCT GTTATCTTCAGATTATTTGAATATAGTCCAGGCACTATCCCAGTGTGCAAAAATAGAATGCCTTTCACCACTCCAATAGC AGCTGCTATTCTTTGTGTCCAAGAAAGCTTTTCCCCAGAAGATCCTATTGAAAGTAAATTTTAGAGAAAAAAAAATTACT TCTTATGCAAAAATAAGAAAATTTTAGGAAAGACTTAAGGTCATTGATTTTTTTTTATAACAAAAACATTAGAAGGAAGG CTATGATGGGAAAAGTTTCCTTACCAGAGACGAAGCTTCTTAAAGTTCTATTTGGAATAAACTCAAATATGAGAAATATA GTGTTGACGCTTGAATCATCCTGGTTGCACTCAAAAGAATGTCCAAGAGCACTGACCAAGTGTAAATGTCTGAGTTTCGA AATCAATTCAACATGGTGCATATAGGTCTGAGGGCTGTGTCTCTTTCTTATTTTCATGCTTCTAACAGCAATGTGCATTC CATCAGAGAGCTCTCCTTTATATATCTGAGATTATAGTTCAAGTAGATTAAATTTTGCAAGTCATAGATAGTAGAGAACA GCTATTTTAAACAGTCAGACGATCAAAGAGTTATATGTATAAACACAGAGTAAACTACAGAACCTAAACAACTGAAAACT ATAGTATATAACAAATATAACAAATTACAGAAGAGGGAAAGTATCATGTAAAAAGTAAAAGCAAGTATGAAAGCACTACA CAATGTGTGGGTTGATGCTTAATGCTTATTGCAGAACTGAAGTTTTGCATCTGGATTCCTGTAATGTATCATGTTCCATA TAGATGGCTAGTGACTCAAATATTTTTTTCCAACAGACAATCATGCCAGAAAATCAAATGTGACACATCAAAAGACCATG CATAGACATAGACCATGTGATTAGCAAGCTCTCTCAACTATTCTTGTTTGCATAAGGATTTATGAAGCTCCATTTTTTAC AGAAAGTTTCTTATGTGATGTGCGTATTATTGACATATATGATTATAGTTTGGACTTTCTTGAGTTAAGTGGAGAGTTAC CACAAAAGTATAGTCCTGCAGGTTTGGGAGCCAAACAATTGCTAGATAAATATGATTCTATCACCCTTAATAACTTCACA TTCATACCTGACCATATGGCCCTTCACTTATGAAACATGATGCATCAAAATTATTTGTAGCTTCCTTAAGTTCGTCCAAG GCGAAGGTCCGGTAAGCAGGAAGGCTGGCTCCCATCTTCATTGTTTGTGATATATACCCTGCAAATAAAAAAAATTAAAT TTAGTGACAATACTTAATAAAAATGTTTTGAATAACATTTTCTAATTTTGTGGCTTCTATGTCTGCATAATAAATTGTGC ACTTATGTAAATTGATCCAATCTAGTGTTAAAATGAAACCAGAATTTCTTCAACTCTAAATTCAATTTCTTTTTTCTTTT TCTGTTATCCATTGATTCATCAACAGCCAGACAAAAAAACTATCTTACCATAAACTTCTATGTCCCTAAAACAAAAACCA AAGCCAAATAATCCCAATTTTGCAGAATTAAACTCTTGTACCAACTAGGCAAAGGATTTATGGACTTACTTGCATCTGTG AGTAGTTTTGCGGTGTTAACTGATGGTACATGCTCTATTATAGACCTTGTAGATGTCCTCACATTACGTTTGTTAATCAC ACGGCTCTTGACATGCTCCTTTATGGATCTTGCAAGTGCTTTCACTGCTTGTTTGTCAGGAACTCTTCTAATGATATGCT CCATTATGGACCTTTTAGGAGTTTTCACTTCATCTTCATTGTGTACCTGACTGATAACATGCTCCAATGCTAACCCTGAA GCTGTTTTCACAACATGTTTTCTGTGAACCTGGCTTATGACCAAAATCACCACTGCAACAATCAGCACTCCCAAAACACC TCCCATACTTGACACAAACACTGTTTTGGCTTTACCAGTTGTTCTACTCTCATGCTCCTGTTGATGGGGTGTGATGTTAA CTGCAATAGCCTCATTCCTGCAGAAGTTAGAAGGGTGCTGGCCTTGGTTCTCACTTGATAAACAATTTCCAGCATATAAA ACAACCCTGGTCTTTGGTCTTAAACAAGAGGGAAGTTCCCCTTTCAAAAGATTTGAAGATAAATCAACAAAGTGCAGATC ATCATTGCATGAAAAATTCTTGAAAAGCATCCCTGTGAGTTTATTGGAAGAAACATCAAGGTAATTGATGGAAGGAAGTG ACAACAATGATGGGGGAAATACCCCCACAAAACCATTCAATGAAAGATCCAATTTTTGGAGCTGATAAAATGAACTTATA TTAGGAGGCACACCAAGCCTGAGGCTGTTGTTTCTAAGCACAAGGGAAACTAGCTTGTTAGGCAGAGAAGGAAAATGAGG TCCAAGTGTGTTGTTTTCCAAGTGAAGAACCTGAAGGTTTGCCAAATTGTGAAGATTAGGTAGCTCCCCAGATAGCTGAT TATTTGACAGATCTAAAACTCTAAGAGTAACAAGGGAATTCACTGAACTTGGAATGCTCCCACTAAACCAATTTTTCTTC ATGCTAAGCACAGCCAAACCTTGAAAAGATCCAAACCATTGGGGAATTTCATCATTCAGGTTGTTGTCATCAAGCACCAA AGATTGCAGATTCTTCAGTTTTGAAAGCTGGAATGGGATGGCTCCACTGAAGTGATTTGAGCTGATGTTAAGTATTTCCA GTGAAGACAATTGAGAAATGCTTTCAGGTAGAGGCCCCCAGAGCCCTAGAGAAACCAAAGAGAGGACTTTTAAGCTTGAG AGGGTTCCCAATGTGGAAAAGAGTGAGTCTGAAGAGAAACTTTGAGGTAATGGGGTGAACTCATTGTTTCCAACAACATG CAGCTGAGTCAAGTTGTCCTCATAGCACACTAGTGTCAAATATGGAGTTGGTTCAATGTTGCAATAGTCTGTGTTGGGGG TGGTGCTAGTGAAGGTGTTTAGTGCTGAGGGGTAGCCAAGAAGTTGCTGGAGTTTGAGAAGTGTCTGAGACTGAGAATAT TGTAATTGCTCTGAAAGATGGATTATGGAAAGAAACAAGATTACAAGGAGAAGATGGGAATGGGGAGCTGGTTTTGCCAT CTTCTCTTCCAATTCAAGGAAGAGAGAAAGAGAGAGATGGAGACTTGGATTGAAGAAATAAAACACAACAAGAGGAGGAT TCTAGGACCAAGGTGCAAACTCCTCTGTCATTCATTCAATGCACATTAGCTTTTTCCCATTCTTGTTCTATCTCATCTCA TGCATACAATTTGTAAGAATTGATAATATAAGGACTAGACACTGCAGAAGTTGAACCTTTTTACAGTGGACCACCATCCA TTTTTGCAATCTACTCTCTTTAGCATAAGTTTGTCTTTCACACTCCAACTTCACCTA 

CDS sequence (LotjaGi3g1v0302800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACGGAATTGAAAAATCAACTAGTGCTGAAGAGAATATTCCAATGGACGAAGCATGTACCAAAGTAGTTCATAGGAC TAATGAACACAGAACTGATACAAGAGATTTTGATCAAGAAAAAGTTCTCAAGAAGCCAGACAAGGTCCTGCCATGTCCTC GCTGCAATAGTTTGGAAACGAAGTTTTGCTACTTCAACAATTACAATGTCAACCAACCTCGGCATTTCTGCAAAAACTGC CAGAGATATTGGACAGCTGGGGGAACAATTCGAAACGTTCCTGTAGGAGCCGGTAAGCGCAAAAACAAGCACTCACATTT GCATTATTATCAGGTTGCTGTGACTCCTGATGATGCAGTACATGGCATGCACACAGATCCAAACCCTGCTAGTAGTGATA TGCATCTCTTGCCTGTTACTTCAAGACCTTTTAAAGAAGCTCCTCTTAGTGAATCCCTTGAAACTATGTTAAATCTCAAG GGCCACACAAAAATTGAAGTGGATTCTTCTACTGTCAAAGATGATTGTGAGGTCCCTTCTAGCTCTTCTGTGAGATCTGT TGAATCCATGGAGAAAGAATGCTCAGAAAATGGGATCGAGCAAGTTGGTTTAATTCCTTTACATCCACTTCATTATTATC CTGTTCCTCCATGGGCTTATCAATGGAATCCCTGTTGGAATGCAATGGCTTTTAGGCCTAGTAGCATAGCTTCCAGTTAC ATGAGTTCAGCAACCATGATAGCAATTCCTGGCTTCTCCACACCAACAGTAGAATTACCAGTATCTCCTTCTTCATACTG GGGTTGCATGCCAAGCTGGGCTGAACAAAAGGACGAGTCTTCATTGGTTGGATCTACATTCAGTGGCATTCCATCACCTT CATCTTCAGTTAGCAACAGTACTTGTTCTGGCAATAGGTCCCCAACCTTGGGAAAACATTCTAGAGATGGAAGTACTGCA GCAGAAGACACAGTGAATCAGAATCTTTGGGTACCTAAGACTGTGAGAATTCATGATCCAGAAGAGGCTGCAAAGAGTTC TATATGGACAACTTTGGCAACAAAGTCTAAACTGAACAAACCAATTATGAAAGGAAGTGTTTTCAAATCATTTGAACCTA TGTCAAATGGAAGTTCTCATGTTTTAGAGGATAATCAGATTCTAAGGGCAAACCCTGCTGCTTTCTCCCGTTCTGAATCT TTTCAGGAAAGCTTGTAA 

Protein sequence (LotjaGi3g1v0302800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNGIEKSTSAEENIPMDEACTKVVHRTNEHRTDTRDFDQEKVLKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNC QRYWTAGGTIRNVPVGAGKRKNKHSHLHYYQVAVTPDDAVHGMHTDPNPASSDMHLLPVTSRPFKEAPLSESLETMLNLK GHTKIEVDSSTVKDDCEVPSSSSVRSVESMEKECSENGIEQVGLIPLHPLHYYPVPPWAYQWNPCWNAMAFRPSSIASSY MSSATMIAIPGFSTPTVELPVSPSSYWGCMPSWAEQKDESSLVGSTFSGIPSPSSSVSNSTCSGNRSPTLGKHSRDGSTA AEDTVNQNLWVPKTVRIHDPEEAAKSSIWTTLATKSKLNKPIMKGSVFKSFEPMSNGSSHVLEDNQILRANPAAFSRSES FQESL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 16 404 389 1.5E-114
PANTHER 16 404 389 1.5E-114
Pfam 47 104 58 6.5E-32
ProSiteProfiles 50 104 55 28.593
ProSitePatterns 52 88 37 -
MobiDBLite 284 325 42 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0302800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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