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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0302800 |
Transcript ID | LotjaGi3g1v0302800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|G8A1Q8|G8A1Q8_MEDTR DOF-type zinc finger DNA-binding family protein; Found in the gene: LotjaGi3g1v0302800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:63207296..63210140) extracted from Lotus japonicus Gifu genome v1.2.
CTCACCCCAGGGTTTCCTGATTAGCTACCCTACCTCCCTCCTAGAAATAGTACTTTAATGAAATGTAAAAGGGAGATTTG AAAGTGTATGTTTATTCTTTTTTAGGCAAGTAAACAGTTTGTTTCCCATGGTTTTGGGTTTTGTTGTTGCACCATCTAGC ATCACTTTTCGGCTCCTGTCTATCCCATGTAACTGTCCAGGTTCCAGTTGAGGCATGTTCCAGGTTACAGATCCCTCTAT CAAGCTTTTTGGAAGCGATATTCACATCCAAACTCCTATTAACTCAGCACATATTGCAGATTCAAATTCTCCCACTCAGA TTCAGCCTCTGCCTCAACCCATCACCATGGTCATGTCATTCAAACTTTCCATTTTATTCTTTCATTCTCCTTCTCATTGG GGTGCTCATTTTCTTTTCTTGTTCAAGTTTTCAGCAAAGTTTGCATTTTTATGGAAATTTATTTGCCTATCTGAAATGGG TACTCATCATCATCCTGAGTGGAACTCCTGTGTGTGTGGAAGCCCTGTGTGAAAATTAAACTCCTTTCTTTTTGTGTAAA TGGTAGGAAAACAATTTTAATTTTTTGGCGATATTTGGTATGCATATTGCAAGCTTATTCTTTTGTAATGAATATTTGGA TGTGGTTTGATAATTTGTTCTGAAGGTGAGACATGAGTATTTTTTGGGTGGATTTGTGTGAGGTGCTAGAGAAAATAAGT GGTGGGATTTAATTTGAATCAATGGGTTGGAATCTGGTTTTTACTAGGACTGAATTTATAAACAGTAGTGGACACCATGG AATTTGAAATGAGACCAAATTATGTGATGCCCTTTGTGGTGGGTACTGTGTTCTATCAACTATAGCAAACTAGCAATGGA ATATGGATAGAGGTTTGGGTAAAATAAGGTTTCTTGTTCTTTTTCTCTGTTATGTTAGGAGTTAAAGGTCAACGGCTTTT TCAACTTGATTCTTGATGCCTCATTTTGTTTTTTTTTCATCTACTGTTCATCATTTGCTAGGGCATAACCATAAGATATT GAGATGCATATTTATTGACAGCCTTTGCATTCTGTCATAGGGTTATAACTTTTAGTCCTAAGGCAAGTTGTCGATTCATA GCATGTTTGGAACTTTGGATCAGGTTATTTTTTCTTAGAATCAATTATGATTTAAAAGAAACCCTTAGAAGCTCATTCCC ATAATTGATTCTGGCTTTAAAATCAGTTGTTGAAGGATATCCAAACATGTTATCAATGTATGCCTAGCTGAAACTGTTTG ATTCTCCATTGCAGAACGGAATTGAAAAATCAACTAGTGCTGAAGAGAATATTCCAATGGACGAAGCATGTACCAAAGTA GTTCATAGGACTAATGAACACAGAACTGATACAAGAGATTTTGATCAAGAAAAAGTTCTCAAGAAGCCAGACAAGGTCCT GCCATGTCCTCGCTGCAATAGTTTGGAAACGAAGTTTTGCTACTTCAACAATTACAATGTCAACCAACCTCGGCATTTCT GCAAAAACTGCCAGAGATATTGGACAGCTGGGGGAACAATTCGAAACGTTCCTGTAGGAGCCGGTAAGCGCAAAAACAAG CACTCACATTTGCATTATTATCAGGTTGCTGTGACTCCTGATGATGCAGTACATGGCATGCACACAGATCCAAACCCTGC TAGTAGTGATATGCATCTCTTGCCTGTTACTTCAAGACCTTTTAAAGAAGCTCCTCTTAGTGAATCCCTTGAAACTATGT TAAATCTCAAGGGCCACACAAAAATTGAAGTGGATTCTTCTACTGTCAAAGATGATTGTGAGGTCCCTTCTAGCTCTTCT GTGAGATCTGTTGAATCCATGGAGAAAGAATGCTCAGAAAATGGGATCGAGCAAGTTGGTTTAATTCCTTTACATCCACT TCATTATTATCCTGTTCCTCCATGGGCTTATCAATGGAATCCCTGTTGGAATGCAATGGCTTTTAGGCCTAGTAGCATAG CTTCCAGTTACATGAGTTCAGCAACCATGATAGCAATTCCTGGCTTCTCCACACCAACAGTAGAATTACCAGTATCTCCT TCTTCATACTGGGGTTGCATGCCAAGCTGGGCTGAACAAAAGGACGAGTCTTCATTGGTTGGATCTACATTCAGTGGCAT TCCATCACCTTCATCTTCAGTTAGCAACAGTACTTGTTCTGGCAATAGGTCCCCAACCTTGGGAAAACATTCTAGAGATG GAAGTACTGCAGCAGAAGACACAGTGAATCAGAATCTTTGGGTACCTAAGACTGTGAGAATTCATGATCCAGAAGAGGCT GCAAAGAGTTCTATATGGACAACTTTGGCAACAAAGTCTAAACTGAACAAACCAATTATGAAAGGAAGTGTTTTCAAATC ATTTGAACCTATGTCAAATGGAAGTTCTCATGTTTTAGAGGATAATCAGATTCTAAGGGCAAACCCTGCTGCTTTCTCCC GTTCTGAATCTTTTCAGGAAAGCTTGTAAAGTTCTGTGTTTATTCCAGCTTTAGGTTGAGTTCAGCTCAACCATGTCATA AAAGAGGATTTCTGCTAGTCCTTTTCTGTCATGGCTAATTCTGTATTAAGTCTTTAGAAGATAGCCATGAGAAGAACCTT GAAGTGTTTTTAAGCTATTATGTTCTCTGGTTAGTAAGAATCCCAATCTTGTGGCAATAAGACTTGTGCCTTTGCACTTC AAGTTCGTTACCATAAAGAAAGGGAGCCATGGCAGTTCATGAAATTCTGACTGAGGTAGTTGTACTAAAGACTTGTGCCT TTATTCTTTTTGTTCATTAGTTGACTAATTTCTTGTTTTTCTTCA
CDS sequence (LotjaGi3g1v0302800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCAGGTTACAGATCCCTCTATCAAGCTTTTTGGAAGCGATATTCACATCCAAACTCCTATTAACTCAGCACATAT TGCAGATTCAAATTCTCCCACTCAGATTCAGCCTCTGCCTCAACCCATCACCATGAACGGAATTGAAAAATCAACTAGTG CTGAAGAGAATATTCCAATGGACGAAGCATGTACCAAAGTAGTTCATAGGACTAATGAACACAGAACTGATACAAGAGAT TTTGATCAAGAAAAAGTTCTCAAGAAGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACGAAGTTTTG CTACTTCAACAATTACAATGTCAACCAACCTCGGCATTTCTGCAAAAACTGCCAGAGATATTGGACAGCTGGGGGAACAA TTCGAAACGTTCCTGTAGGAGCCGGTAAGCGCAAAAACAAGCACTCACATTTGCATTATTATCAGGTTGCTGTGACTCCT GATGATGCAGTACATGGCATGCACACAGATCCAAACCCTGCTAGTAGTGATATGCATCTCTTGCCTGTTACTTCAAGACC TTTTAAAGAAGCTCCTCTTAGTGAATCCCTTGAAACTATGTTAAATCTCAAGGGCCACACAAAAATTGAAGTGGATTCTT CTACTGTCAAAGATGATTGTGAGGTCCCTTCTAGCTCTTCTGTGAGATCTGTTGAATCCATGGAGAAAGAATGCTCAGAA AATGGGATCGAGCAAGTTGGTTTAATTCCTTTACATCCACTTCATTATTATCCTGTTCCTCCATGGGCTTATCAATGGAA TCCCTGTTGGAATGCAATGGCTTTTAGGCCTAGTAGCATAGCTTCCAGTTACATGAGTTCAGCAACCATGATAGCAATTC CTGGCTTCTCCACACCAACAGTAGAATTACCAGTATCTCCTTCTTCATACTGGGGTTGCATGCCAAGCTGGGCTGAACAA AAGGACGAGTCTTCATTGGTTGGATCTACATTCAGTGGCATTCCATCACCTTCATCTTCAGTTAGCAACAGTACTTGTTC TGGCAATAGGTCCCCAACCTTGGGAAAACATTCTAGAGATGGAAGTACTGCAGCAGAAGACACAGTGAATCAGAATCTTT GGGTACCTAAGACTGTGAGAATTCATGATCCAGAAGAGGCTGCAAAGAGTTCTATATGGACAACTTTGGCAACAAAGTCT AAACTGAACAAACCAATTATGAAAGGAAGTGTTTTCAAATCATTTGAACCTATGTCAAATGGAAGTTCTCATGTTTTAGA GGATAATCAGATTCTAAGGGCAAACCCTGCTGCTTTCTCCCGTTCTGAATCTTTTCAGGAAAGCTTGTAA
Protein sequence (LotjaGi3g1v0302800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFQVTDPSIKLFGSDIHIQTPINSAHIADSNSPTQIQPLPQPITMNGIEKSTSAEENIPMDEACTKVVHRTNEHRTDTRD FDQEKVLKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKHSHLHYYQVAVTP DDAVHGMHTDPNPASSDMHLLPVTSRPFKEAPLSESLETMLNLKGHTKIEVDSSTVKDDCEVPSSSSVRSVESMEKECSE NGIEQVGLIPLHPLHYYPVPPWAYQWNPCWNAMAFRPSSIASSYMSSATMIAIPGFSTPTVELPVSPSSYWGCMPSWAEQ KDESSLVGSTFSGIPSPSSSVSNSTCSGNRSPTLGKHSRDGSTAAEDTVNQNLWVPKTVRIHDPEEAAKSSIWTTLATKS KLNKPIMKGSVFKSFEPMSNGSSHVLEDNQILRANPAAFSRSESFQESL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 448 | 445 | 4.1E-118 | – | |
PANTHER | 4 | 448 | 445 | 4.1E-118 | – | |
Pfam | 91 | 148 | 58 | 7.5E-32 | ||
ProSiteProfiles | 94 | 148 | 55 | 28.593 | ||
ProSitePatterns | 96 | 132 | 37 | - | ||
MobiDBLite | 328 | 369 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0302800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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