Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0304400 |
| Transcript ID | LotjaGi3g1v0304400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bidirectional sugar transporter SWEET; TAIR: AT3G14770.1 Nodulin MtN3 family protein; Swiss-Prot: sp|Q9LH79|SWET2_ARATH Bidirectional sugar transporter SWEET2; TrEMBL-Plants: tr|I3T8J6|I3T8J6_LOTJA Bidirectional sugar transporter SWEET; Found in the gene: LotjaGi3g1v0304400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:63957260..63960062) extracted from Lotus japonicus Gifu genome v1.2.
GATTGTATATTGGACCGTATCCACTTACCCATATAAATAAAAAGAAAAAAAGACCGATGAGTTGGACAGATGGATTCAGC TGTATTTTGTTTGTCTTGTTTTTCCAATTGAATGTTCGGACGTCGACTGCGTCTCTTGTGGTCCTATCCCGAACAGCTAA GCAAAACCCCAACACACACATAACCTTCACCTTCGCCCTAATTTTGCAGCAACTTGCACTCAACGTGTGGACATAAAACT CAAATGCAAATTGGACCTATTTCTCGGCACGAAACCCTTTTTTAATTTTATTTTTGGGGAGTTCTTTGCTACAGCCCCTG ATAAATGAAATATTTCAAATATTTATATCAGGTTAGTCTTATCTGTCCTCGTCAACAAAAGATTTGTGATTGAAGCCTAT GAATATTCGTAAACCTGGGGGAGGATCTTACTGAGAGAAAGCACAGAGGACATGTCTCAAATTTAGTCATCTAATTTAAT GAAAGTTGTTGTTCTTGTGCCTGGAATTGGTGTTTGAACTTTGAAGATTAATGTCAATGTTGGCTGCATTTTTCATCAGT CAAGTTGCCAAGGATGCAGCTGGAATCGCAGGTACAATTTTCTCAGTTTCTAGGGATTATTTTCCTTGCTTTCTTTCTTG GGTTTTATTGATGAAGTAAAAAGTCCACACTTTACCTTGTTGAGTATCATTTCTCACAATTCAAAGTATATGCTTGCTTA TTTTCAGGGAACATATTTGCTTTTGGGCTATTTTTATCTCCCATGTAAGTTTCTTTATGGATTCTGAAGAATAATTGAGG GCTTGTTTGGAAACCCGTCACGGTGAAGTCAAATCAAAATCGTGGTGGACATAACATAAGTAATTTCTCTTAGCTTTTGC TTCTGTCCACCATGATTTTAGCTTCACCGTGGTTTTTGAAAGAGTTTCCAGACAGGCACTAAAAAGAGAAGTTGTGGTTT GTCTAATTGTCTCCCTCACTATGTAACTCTGTTATGTTTCGAACTTTAGACCCACATTTAGGAGAATTGCCAGGAATGGA TCAACAGAAATGTTCTCAGGGTTGCCATATATCTATTCCCTCATGAACTGCTTTATCTGCTTGTGGTATGGCACACCTCT GGTATCACGTGATAATTTGTTGGTTACTACTGTAAATTCAATTGGAGCAGTCTTTCAGAGTGTGTATATAATCCTCTTCT TGATGTATGCTGAGAAAGAAAAGAAGGTTACTTACTTTTCTTACACATTTTGAAGCCTATTGTGAAAGCTCAAAACAATG GTTAATTTCTATGATCTCATAGTTTAAACTAACATTGGATAGGTGAGACTGCTTGGATTGTTGCTGGCAGTTCTTGGCAT ATTTGCAATCATATTAATTGGAAGTTTGCAAATACCTGACATTGAAATGCGCCGGGACTTTGTGGGATTCTTGAGTTGTG CATCTCTTATTTCTATGTTTGCTTCTCCATTGTTTATAATTGTAAGTATGTCCTTTGCAAAGATGTATCATATGAGAATA GTCTCCTTATGTGAGAATGGTAGGAATAAATCATGACCGCTAGATTTAATTATGAATTGTCAAAGATTAAAACAATAAGA CATGCATTTGACATTTTTTAGTGCTCACGTGACCATTAAATAACTTATAATCTTGACCATCCATGGTTAGATCTAATGGT CATGATTTATTCATACCATTCATACCATCCATGGTTAGATCTAATGGTCATGATTTATTCATACATCCATGTCATTTTCT ATTTATCCTTTTAGCATTTAGCTGTTTCAATTAGCTAGGTGAAGTTACTAACATGACCTATACAAGTATATTTCTCAGAA ATTGGTCATTCAGACAAAGAGCATTGAATTCATGCCATTTTACCTTTCACTTTCTACCTTCCTAATGAGCACCTCTTTCT TACTTTATGGATTATTCAACGATGATGCCTTCATATATGTAAGGTTCCTTTCAGCTCATTTCTTTTTCAGTACATCTATT CTTGAAATGTTGGTAGCTTGTATTTGCAATATAACATGCATGTACATCTCTGCTTGATTTTTGTAGGTGCCAAATGGGAT AGGAACAATTTTGGGAGTGGTGCAATTGATACTATATTTCTATTATGAAAGTAAATCTAGAAAAGAGTCTGGAGAACCAT TGATGGTGTCATATGCTTGATCAGTTCTACTGAAAAAAATGGTTAAAGCAAATTTTGGGTCTTTCAGAGTCCATGAAGGC TATATTCTCTAAAATTGGCCATGGGCATTCTTTTGTTAGAATCCCCTTTAATTGTATGATATATATTTCTCTAGAATTGG CTAAACCAATCTATGTTTCTTATGAATGGAATGTTTATATTCCAAATAAGGCTAATGAATGGAGCATATATTTTGCGGGG GTTAGGTGAATTTTGAGTTTGTTTTTAAGTTACCTCAGAATTCATAATACTTTTAACTTTTTTTTTGAGGAAATAATATT TTTAACTTCATTACCAGAGGTTGCTTACTTTTTTCACCGTTTCCTTGCAAAAAGTTTCCTTTTCAGAATCATTTTCATCA AAGGATTAGCCGACTAAAGCGTGGTAGCTCTCATTTCCCCTTCTCAATAATGGGCTTGTCCATACTACTGATGTACATTA TTATCTGTCAAACTATATTGGTACACGATCTTGTCTTTCAAATTTCACAGAAAAAGCTCAAAATTGGAAAGAAAGAAAAA AAAGTTAAAAGAGAGTGCCGAAGAGAGTGTCAAAAAACAGGAATGTTGTAAATAGATGGTTCATATCCAGCAAATGTTTC GTG
CDS sequence (LotjaGi3g1v0304400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATGTTGGCTGCATTTTTCATCAGTCAAGTTGCCAAGGATGCAGCTGGAATCGCAGGGAACATATTTGCTTTTGG GCTATTTTTATCTCCCATACCCACATTTAGGAGAATTGCCAGGAATGGATCAACAGAAATGTTCTCAGGGTTGCCATATA TCTATTCCCTCATGAACTGCTTTATCTGCTTGTGGTATGGCACACCTCTGGTATCACGTGATAATTTGTTGGTTACTACT GTAAATTCAATTGGAGCAGTCTTTCAGAGTGTGTATATAATCCTCTTCTTGATGTATGCTGAGAAAGAAAAGAAGGTGAG ACTGCTTGGATTGTTGCTGGCAGTTCTTGGCATATTTGCAATCATATTAATTGGAAGTTTGCAAATACCTGACATTGAAA TGCGCCGGGACTTTGTGGGATTCTTGAGTTGTGCATCTCTTATTTCTATGTTTGCTTCTCCATTGTTTATAATTAAATTG GTCATTCAGACAAAGAGCATTGAATTCATGCCATTTTACCTTTCACTTTCTACCTTCCTAATGAGCACCTCTTTCTTACT TTATGGATTATTCAACGATGATGCCTTCATATATGTGCCAAATGGGATAGGAACAATTTTGGGAGTGGTGCAATTGATAC TATATTTCTATTATGAAAGTAAATCTAGAAAAGAGTCTGGAGAACCATTGATGGTGTCATATGCTTGA
Protein sequence (LotjaGi3g1v0304400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMLAAFFISQVAKDAAGIAGNIFAFGLFLSPIPTFRRIARNGSTEMFSGLPYIYSLMNCFICLWYGTPLVSRDNLLVTT VNSIGAVFQSVYIILFLMYAEKEKKVRLLGLLLAVLGIFAIILIGSLQIPDIEMRRDFVGFLSCASLISMFASPLFIIKL VIQTKSIEFMPFYLSLSTFLMSTSFLLYGLFNDDAFIYVPNGIGTILGVVQLILYFYYESKSRKESGEPLMVSYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 235 | 235 | 3.9E-127 | – | |
| PANTHER | 1 | 235 | 235 | 3.9E-127 | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| TMHMM | 15 | 34 | 20 | - | – | |
| Phobius | 16 | 36 | 21 | - | – | |
| Gene3D | 18 | 112 | 95 | 2.8E-11 | – | |
| Pfam | 18 | 104 | 87 | 1.9E-20 | ||
| Phobius | 37 | 47 | 11 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 48 | 68 | 21 | - | – | |
| Phobius | 69 | 79 | 11 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 80 | 99 | 20 | - | – | |
| Phobius | 100 | 105 | 6 | - | – | |
| Phobius | 106 | 126 | 21 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 127 | 137 | 11 | - | – | |
| Gene3D | 136 | 232 | 97 | 6.4E-14 | – | |
| Pfam | 138 | 222 | 85 | 4.4E-23 | ||
| Phobius | 138 | 158 | 21 | - | – | |
| TMHMM | 140 | 162 | 23 | - | – | |
| Phobius | 159 | 169 | 11 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 170 | 191 | 22 | - | – | |
| Phobius | 192 | 196 | 5 | - | – | |
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 197 | 218 | 22 | - | – | |
| Phobius | 219 | 235 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0304400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…