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LotjaGi3g1v0305800.1

Overview

Field Value
Gene ID LotjaGi3g1v0305800
Transcript ID LotjaGi3g1v0305800.1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7LIZ9|G7LIZ9_MEDTR Disease resistance protein (TIR-NBS-LRR class), putative; Found in the gene: LotjaGi3g1v0305800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:64375477..64380515) extracted from Lotus japonicus Gifu genome v1.2.

CTGTCAATTATTGTCAGACGCGTTTATAGAACTAGTGAAGGAGGCGGTCACAGGATGAGGAACGCGGATACAGAAAAAAC TGAAAAAAAGTCATAAATCATAAATGCAAGTAGTTTTTTACAAGTCAATTATTTGAAGTTTCAACACCTTCGACGTAGTT GCCTCCTTATTTAGAAGATGCTTTCTATACATTTCCCACAATTTCTCCATTTCTAAACAGTGTCATTAGTCTTCTTTAGT AAATATGTATTGCAAGCAAATCCAAAGCAGCTCTTCATCTCAAACTATATGGAAATATGACGTGTTTCTAAGTTTTAGAG GTGAAGACACTAGAAACAACTTCACTGATCATCTTTTTGGCGCTCTTTATGAAAAAGGCTTTGTTATATTCAAGGATGAC ATAAAGCTCACAAAAGGAGGAGATATATTCACTGAGCTTCTACAAGCAATTGAAGAATCCCAAATTTTGATTGTGGTCTT CTCAAAAAATTATGCTTCTTCCAAATGGTGCTTGCAAGAACTTGCAAAGATTGCTGATTGCATTAACGTACAAGGACAAA AAGTTCTGCCTATTTTCTATGATGTGAATCCATCTGATGTGAGAAGACAAAGTGGAAATTATGAAAAAGCCTTCGCGAAG CATGAAGAAAGATTCAAAGATCATATAGAGATGATTCAAACATGGAGGGAAGCTCTATCACAAGTAGCTAGTCTCTCTGG TTGGGATATCAGCAATAAGTAAGTAATCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTATTTTCCTG CTATTCATTGATATTTTGTTGCCATACAAAAGCATTTTGCTGCAATTTGGGTATTTTATTAGAGCGGAAATCCCATTGAG AAAATAAAATAATGGAGAAAATATGACACCAATAATTTAACGTTGTTCGACAATTTGCCTACATTCACGACTGAATAGCA ACAGAAAAATTCCACTATGATAAAAGAGAATTAATTACAAATTCACTCAGTGTTTCAGTCACTTCACAAAATGCAATTAC ACCCAATACCACTCTCAGTCAAGTCTCTCTCACACACTCTAATATATAACTCACACTATTAGAACAAGAGAATAAGAGAT TGAGGAGACAACTCACAGTTGATTTTGGTGCGTCCTCATGAGGCATTGGGCATGGCTATTTATAGCCAAAGTTCATGAAA TTCCAGCCACATGATTTTTTTCTTGGTGTGGCAAAAACTTGGCCACACATATTTGCCAATCATGTGGCTTCTCTAAATGC CATGTCTCTTTCCTTTTAGCCACAATATAATAAATCTCCATCTTGGCTAAAAGACTATCATAGCTTTCCTTCTGCTGCTC TCCTTCATGCCCGTTAGAATTTCAGAACTCTAATCCAGTTCATACAATGTTTGAACTTGGCTGTCGGGACTAGCTTTGTC TTCATGTCTACCAGGTTTTCTGCAGTGGGTATCTTCTCAACTCTAACCATTCCTTTCTCAACGATATCTCTGAAAAAGTG CATCCTAACATCAATATGCTTAGTTCTTTCATGATACATTGGATTCTTCGTCAGATGTATTATGTATAACACTTTGACTA TTGTAGTAGATGGTTGTTTCTTCCGGTTCAGTGGCGGTACGTAGTTGAGACAGGGGAGGGCTGCTGCCCCCCCAACAAAA ATTTTAAAATCACCTATAGGTACCATATATAATAATTACTAATATATTTTATACTTTTTTAATGTAGTACCTATATAGCT TAGGTCACACGCTTGGCATTTTTTTACCTTTAGAAACTTCTACAGACTACAGCTCATCTCTCGTTCTCATTCTCTCACCG CCTCGCAGTCTCGCACACTCCATATTCACGTTTTATCCCCTTTCTTTTACAGCAAAGAAACAAGTGCTTCAACAGTGGCA ACAACAATCAATTAACACTAAGAAATCAAGAATTTTCTAATTGGCTTTGGCTTTGACCCTTCACAGTACGTTGCCTTTTC TCTCTAGTCTCTATCTCATCTAGACTAAAATATATGAACTTGATTTCTTTTCTCACCACAATTGGATTTAATTGCTTATT TTGACTATCCTTTAGAAGACAACTTTTACCTATTTATTTTCTATTTTACCTCAAAAGTAGTACATGATTTTGTTTTGTGA TTAGATTCTTCTTTGAAAGTGAGTGCTTTGTATAAAAAAATTAGGGTTGCTACTTGCTACTTACGTATCTACAAAATTGG GGAAAATTGGGGTTGCTGCGTATCTATAAAATTGGGGAATGTTATGAACTTATGATTTTGCTAACTTACTATTGGGTTTG TTACTATGTTTTAAGTTTGGGTATCACACAAGTGAAGTGACATTATAAGCTTGTTTTGTTGACTGATAACTCTAAGCTCA TCTTTGGTTCCTAGGGATGCTTACAAATCCTTTGATATTGATAGCATTTGCACTATTGTGGAGAAATTTTATCCTATGGA TTTTAGTGAGCAGGAGAAGATTAATTTGAGATTTCAACTTCAACATTTCATCACTGATGCTCGTCAAGAATCAAATTTGA AGAACTTGTCAACTATTCAAGAATTGTGTTCATGTTTGGCAGCAACAAAAAAATCAGAAGTTTATTACTTGTTTGATAGA TTGTTTCGTCTTATCATGACTCTTCCAGTTTCTACAGCTACATCTGAAAGGTCTTTTTCAGCAATGAAAATCATCAAGAC TAGGTTGAGAAACAAGATGGAAGCTGATTATCTAGCCGACAGCATGATAGTTCACATTGAAAGGGATATTGCAACAAGTT TTAGCTCCGATTCACTTATTGATGATTTCAAGTCACTAAAAGAGCGCAGAGCGGCACTATAATTGAAGGTGACTTTTAAT ATTTATGGCAAATTTTATGTTAACATTGCACTTAAATTTAAAATATATTACATGTTTAGTTTAGGCACAAAAATTTTATT TACAGCCCCACCAAATAATATATTCTAGTTCCGCCACTGTTCCGGTTGTATACCCAACTCTTCAATTAGACCTTTCTCCC ATATGCCTTCCTCTACAACTTCTGTTACTGTGATGTACTCCGCTTCAGTTGTAGACAAAGCAACACTTTATTGTAAAGTT GCTTTCCAACTAATAGTACAACCACACAGTGTAAAGACATATCTAGTGAGTGATCTTCGCTTATCCAGATCTTCGGCATA GTCTGAGTCAACGTATCCTTTGATCTTTCTCCTGACATCTTTGACATTTCCATATAAAAGCCCTATACCTGTGGTACTTT TCAGGTAGCGCATAATCCACTTCATAGCTTTCTAGTGAATTTTGTCAAGACTTGCCATATACTTTCTTACCATGCTTACT GCTTGTGCAATATCTGGGCTAGTGCACACCATGACATACATGAGACAGCTAACTGCGCAAGGTACATTTGACATCTTCTT TTCACTCTCAGTTTGTGGACCCAAGGATGTCGAAAGTTTGAAATGAGTGAGTCGCCAATGGTGTAGTTACAGGTTTAACA TTTTGCATGGCAAATTGTTCAAGTACTTTCTCAATGCACTTCTTTTGCGATAGAAAGAGCGTCTTTGCTCTTCTATCCAT GTGAAGCTCCATTCCCAGAATTTTCCTTGCAGCTCCTAAGTTCTTCATTTCAAACTCCAAGCTCAATTGAGCTTTTAAGT TCTTATTTCAGACATGTTCTTACAGGCGATCAACATGTTATTTACATAAAAGAGTAAGTAAATGAATTACTTATCTGCAA GCTTCTTGTAGTAGACACACTAGGCTCACTTCTGCAATAGCCATTTTCAAGCATGAAGGTGTGAAACCTCTTGTACCACT TGTCTGGGAGACTGTTGAGGCCAAATAAAGATTTCTTCAAAAAGCAAACATGATCTTCCTTCCCCTCGGACTTCAAATCC CTGAGGCTGCTTCCTGCAGATTTGTTCCTCCAGCTCACCATGCAAGAATGTTGTCTTGACATCTAGCTGCTCAAGTTGTA GATCAAATTGAGATACAATGGCAAGTAGGATGCGAATAGAGCTATGTTTATCATAGGAGATAAAATCTTTAGCAACTAAT CGTGCTTTACATCTTGCATCTTTAACTCCACAAATTCCTTCCTTCTTCTTGAAGACCCATTTGCATCTAACAATGTTCTA AGCCTTTGGCTTTTCAACAAGAACCCAAGTATGATTCTAATGAAGAGATTCAATTTCCTCCGTTATGGCAGCAATCCATT GAGAAACTTCACTGTTGTTGACAGCTTCTCCGTAAGACTGAGGTTTATTATCAGCAGTATTTAGAGCGTACGACACCAGT TCAGCATAGCCATACTTTTGAGGAGATTTTATTAGGGTTGTTAATGTCGGATAGCGTAGCATAGCGGCAAGCCCCAAAAA AGTTATTTTGAGCGCCATAGCGGACAATAGCGTCAAATAGCGGTGAATGGTGGAGTAGCGGTGAACCCTCAGGGCGCTAT GCTATAGCTCTATTCCACCCCTATAGCGAGCTATTAACAAGCCTAGATTTTATCAGTCTGACAGGGTTGAAGAAGAGGAA GAGAGAAAAAGAGAGAGCGAGAGAGAGAAAGAGAGAGAGAGGGGGAAAGATAGGGATTGAAAAGAAACAGTTCATACAAT CTACTGTGAATGACCAATTACAAGGTATTTATCTATCCCAGATATACAGAACAAACTTTCCCGCCTAATCCAAGTTCAGC TGAAAGCCAAATCACCAAAACATTCGCATCAAATCCCCCCCCCCCCCCCCCCCTAAAATCCTCCTTGTCCTCAAGGAGAA GCAGAAGTGTCAAATGTCGGAAACTACAACATCAGGTCATATGAGGCAGTTTGGATGAGCTTCTTTATAAGCTCTTATAG AAAAAGAGCTTTTTGTAGAAGCTCTAAATGAAAAAGCTCCTCTTAAATAAGTTATTTAGCGTTTGGATGCACACATACAT AAGTGCTTATTCAAGTAGAAAGTGGCGTTTGGATACATTTGTATAAGCACTTTTATTTTATAAAATTACGAAAAAGGGC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0305800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTATTGCAAGCAAATCCAAAGCAGCTCTTCATCTCAAACTATATGGAAATATGACGTGTTTCTAAGTTTTAGAGGTGA AGACACTAGAAACAACTTCACTGATCATCTTTTTGGCGCTCTTTATGAAAAAGGCTTTGTTATATTCAAGGATGACATAA AGCTCACAAAAGGAGGAGATATATTCACTGAGCTTCTACAAGCAATTGAAGAATCCCAAATTTTGATTGTGGTCTTCTCA AAAAATTATGCTTCTTCCAAATGGTGCTTGCAAGAACTTGCAAAGATTGCTGATTGCATTAACGTACAAGGACAAAAAGT TCTGCCTATTTTCTATGATGTGAATCCATCTGATGTGAGAAGACAAAGTGGAAATTATGAAAAAGCCTTCGCGAAGCATG AAGAAAGATTCAAAGATCATATAGAGATGATTCAAACATGGAGGGAAGCTCTATCACAAGTAGCTAGTCTCTCTGGTTGG GATATCAGCAATAAGTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0305800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYCKQIQSSSSSQTIWKYDVFLSFRGEDTRNNFTDHLFGALYEKGFVIFKDDIKLTKGGDIFTELLQAIEESQILIVVFS KNYASSKWCLQELAKIADCINVQGQKVLPIFYDVNPSDVRRQSGNYEKAFAKHEERFKDHIEMIQTWREALSQVASLSGW DISNK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32009:SF51
8 164 157 2.1E-80 –
PANTHER
PTHR32009
8 164 157 2.1E-80 –
SUPERFAMILY
SSF52200
8 160 153 1.7E-44
IPR035897
Gene3D
G3DSA:3.40.50.10140
11 165 155 7.3E-65
IPR035897
ProSiteProfiles
PS50104
16 157 142 30.967
IPR000157
Pfam
PF01582
17 153 137 5.7E-45
IPR000157
SMART
SM00255
17 157 141 2.5E-44
IPR000157
CDD
cd17003
60 132 73 0.00155255 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0007165
Biological process Signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0305800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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