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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0308600 |
Transcript ID | LotjaGi3g1v0308600.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pectinesterase; TAIR: AT3G10710.1 root hair specific 12; Swiss-Prot: sp|Q9SG77|PME24_ARATH Putative pectinesterase/pectinesterase inhibitor 24; TrEMBL-Plants: tr|A0A0L9V3K8|A0A0L9V3K8_PHAAN Pectinesterase; Found in the gene: LotjaGi3g1v0308600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:65397597..65398241) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCTTTCGGAACACAGCTGGTGCAGCGAAGCACCAAGCAGTGGCACTAATGACAAGTGCTGATTTAGCAGTTTTCTA TAGATGTCAAATTGATGCATATCAGGACACTCTTTATGTTCATTCCAATCGCCAATTCTACAGGGAATGCAACATCTACG GAACAGTTGACTTCATTTTTGGCAACTCTGCAGCTGTCTTACAAAACTGCAACATTTTGCCAAAGCTCCCAATGCAGGGT CAGCAGAACACAATCACAGCGCAGGGAAAAACTGACCCTAACATGAACACAGGGATTTCAATTCAGAATTGCAGCATTTC GCCATTTGGGAACTTGAGTTATGTCCAAACATACCTGGGAAGACCCTGGAAGAATTACTCAACCACTGTAGTTATGCAAT CCACGTTGGGCAGCTTCATTAGTCCAAATGGATGGTTACCATGGGTGGGGAACTCAGCACCAGACACCATATTCTATGCT GAATATCAGAATGTTGGACAAGGTGCTTCAACAAAGAATAGGGTTAAATGGAAGGGTTTGAAAACCATTACCAGTAAACA AGCTAGCAAGTTTACAGTCAAGTCCTTTCTTTCAGGGGATAAATGGATCCCATCTTCTGGTACCCCCTTTAAGTCTTCTA TGTGA
CDS sequence (LotjaGi3g1v0308600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTTTCGGAACACAGCTGGTGCAGCGAAGCACCAAGCAGTGGCACTAATGACAAGTGCTGATTTAGCAGTTTTCTA TAGATGTCAAATTGATGCATATCAGGACACTCTTTATGTTCATTCCAATCGCCAATTCTACAGGGAATGCAACATCTACG GAACAGTTGACTTCATTTTTGGCAACTCTGCAGCTGTCTTACAAAACTGCAACATTTTGCCAAAGCTCCCAATGCAGGGT CAGCAGAACACAATCACAGCGCAGGGAAAAACTGACCCTAACATGAACACAGGGATTTCAATTCAGAATTGCAGCATTTC GCCATTTGGGAACTTGAGTTATGTCCAAACATACCTGGGAAGACCCTGGAAGAATTACTCAACCACTGTAGTTATGCAAT CCACGTTGGGCAGCTTCATTAGTCCAAATGGATGGTTACCATGGGTGGGGAACTCAGCACCAGACACCATATTCTATGCT GAATATCAGAATGTTGGACAAGGTGCTTCAACAAAGAATAGGGTTAAATGGAAGGGTTTGAAAACCATTACCAGTAAACA AGCTAGCAAGTTTACAGTCAAGTCCTTTCTTTCAGGGGATAAATGGATCCCATCTTCTGGTACCCCCTTTAAGTCTTCTA TGTGA
Protein sequence (LotjaGi3g1v0308600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFRNTAGAAKHQAVALMTSADLAVFYRCQIDAYQDTLYVHSNRQFYRECNIYGTVDFIFGNSAAVLQNCNILPKLPMQG QQNTITAQGKTDPNMNTGISIQNCSISPFGNLSYVQTYLGRPWKNYSTTVVMQSTLGSFISPNGWLPWVGNSAPDTIFYA EYQNVGQGASTKNRVKWKGLKTITSKQASKFTVKSFLSGDKWIPSSGTPFKSSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 213 | 213 | 2.9E-134 | – | |
PANTHER | 1 | 213 | 213 | 2.9E-134 | – | |
Pfam | 1 | 200 | 200 | 8.3E-99 | ||
Gene3D | 1 | 214 | 214 | 4.1E-86 | ||
SUPERFAMILY | 2 | 211 | 210 | 8.48E-69 | ||
ProSitePatterns | 52 | 61 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi3g1v0308600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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