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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0312500 |
| Transcript ID | LotjaGi3g1v0312500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear factor Y subunit C; TAIR: AT3G12480.1 nuclear factor Y, subunit C11; Swiss-Prot: sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor; TrEMBL-Plants: tr|I3SPM8|I3SPM8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0312500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:66077312..66083097) extracted from Lotus japonicus Gifu genome v1.2.
GTCATTGTTTTTCATTTCCTTTTGCCTCAATCCTCTGCAGCTATTGGGCCGTCACACATTTCCTGTCACCAACGTGTGAC TCTGACAAAACCCGCACGGAGGCATATTACGTTGAACGAATCTGAGAAATCGAACTCAGTCGCTCGCTGCACTGTGTCTT GTCCTTCGGATCTGCCAATGGGTGCTGTTGGTTTCATCGCGTTGACGTTGGGGGCACTCTTCTTCTTCAAAGCTTTCGAT TTCACTTTCTGGGTCTCCTTCTTCTGCTTCATTTGATTCCCCACTTCACCGTGCTCCTTCAAAATCGCTTACCATGAAGA AGAAGCTCGATACCCGTTTCCCTGCTGTGAGTATTTCCGCTTTCTCTTTGCCAAGTTTTAATCTTTTGATTCAACTGAAC ATGATATTTCTGGTTTTACATGATGGGTATAAAAAAAATTGTAATTTAGTATAATTGATGGGTTTTATTTGTTTAGCTTT ATGAAGATTGATAATTTAAGCAAATGGGTTTTTAGTGATGTGGTTATTATGGAGATGTGTGATGTTACTTTTAGTGCTTG GTTTAGTTTGGGCTCTGAATTTGGATTTGTTTGGAGTTTTTTGATTTATAATTAATTGATGCATGTGTTGTGTCAAATGA GAATGGTGATGAGAGTTGTGATGGGGTTATGTTATCTGGTGTTAGACAAGTGTGGAACTTACTTTCCATTGTTGGCTTGG CACTGGACTAACCTATGATAAATTCATCAATTCAGGATAGGGTTGTCTTTTTTTTTTTTTTTGTATGTGAAGCGTAATTA TCTTCGAAACCTGTAATTGCCGTCTTATTGTTTTTTCTTTTTCTTGGAGAAAAAAGTGGACGGATGAGGGAGGATAAGAT TATCCTAAAAAAATGGAAAGTAAAAGGAAACAGATTGCTACAATGATAACAAAAATGATATGACACAAAATCTGTTCATT CTTTCTAGATTTCAGTAATGGAAAGTCCATGGAAGCAAGTAAGCAACCGTGAACAGAGCATTTGAGAGAAGCCATATGAA GACATCCTTGGGTTTCTGATAATTAGCCATGTGTTATCTAGTTGTTTTGGCCGTCATATTTTCCCACCACACAGAAGTGA CCTATAATTAATCAAAAACATATGTTAAGTCTTGACAGGCATAACATGATAATGATTTTTCATTATGTTAATTGTCAAGA GGGGGGAAACAGGACTACAGGAGCTAGGTGGGGAGACAGGGAGAGAGGCTGCTTCTATGAAATTGAAATTACTCTGTTAA AATCTTCTCTGTATTTAAGTATTATAAGGAGTGAGCTTTTATAAAAGGAACACTATTTGATGTGATGGGAATATCAAATT GCAGGCTCGGATAAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCCCTCGCTGTGCCTGTTTTAGTTTGTG AGTTTCTTCGACTTGCTGTCTTATTAACTTTAGGGTTTGTCTTGTTCATTTTTGTTAACTGTACTCTTGAATGCCTTACA GCTAAAGCTCTAGAGCTATTTCTGCAAGATCTTTGTGATCGCACTTATGAAATAACTCTCCAAAGAGGAGCAAAAACCAT GAATTCGTTGCATTTGTAAGTATATATGCTATTTATTACTTCTCTTCAATCTCATTGTAGTGAAGAACTAACTCAAAAAC TTAGTTTAATGTCTCTTTTGATTGGCTTCTTTCAATGTTTTTAGTTTTGATTTTAATTTCCACTGCTCCTAATACCCATG AAATACACCTAATGACCTAAGGAAGTGTGCCTCGTCATACAAGTAAAATATGGTTCAAGTCTCAAATCGTAGTTGTCACT CACAGATCCCGGAGCGTCGCAGCCACCGGAAATACTGGGATAGCAGGATGGCTATGAAACGGTGGTTGTCGAAGGTTCGT CGAGGAGGCAGAGGTGCTCGACTTTGAGTTTCTCATGTAGGGTTCTTTCCACGTGGAAATCACAGAAAAAGACCCCTAAA AGTCCCCACTTTATGTTTTAAAGTCAAGCTCATTTCTGTAAGTTCGGGTAAACTTCCCTGTCCCGCCGTGATCGCACGCG AAAATCCGCGAAATCGGCCTCGATGGTGAAGTGAGACGCGACGGGGCACACCGTTTCTGTGGGTGGCTGCGACACGATGC TGCGATCCTGGCGAGGTCGCGCTCGATTGACAACCTAGTCTCATAAGTCATTCCCTCAAAAACTAATTGGTAATTACTAG ATTCACAAGATCCTTATGTTATCCAGACAATCAGATTGGGAGAAAATATTCATTTCAATTGAAGGTAGACGGTCCAAAGT AAATTAAACATATGTTCAATGAAACATAAGGGTTTCTTTATGGAAGCTCCAATAACTATGGTTTGACTTGCATTCAATTG TGTATTTCTTTGATTCCCTATAATATAGTGGTTAACTTCATAACCTAATTACCTCTGCAAGTTCTATTAATTATCACTGG TTATTGTTGGAAATTTATGTAAATAGTGTATCTAGGCACTATGTAGGTTGAGTAGAAATGTAGAACCGTGTAATTGTGAT AGTTAGGGTAATTGTAGCACGTGTTATTATTTTCCAGTCTATAGCCCCTGTTCCTTCATGCCTCCCCTTCACTAGGTAAG ATTCTGTCGCTTACCCAGGCGTCTCAGCCAACCACCAATCCCCCCGCCATCTTTTAGCCTCTCCAGTTTGGCCTGTGGTC TTCGCTCGCTGGCGAAAGAAAAAGCACCAGTGCTTTCATATTTTCAGCAACTCGCCAAACTCGAACTGGCACTGCTATGA TTAGGACAAGACTTATCAATAAGCGAAATTGTCTCATAATACTATCATAGTGTAGTTTGTGGAAATTCCGAGTTCTTCAA ACATCCTTTTTAACCAACCTCCTTCACAAGTATCATGTGCCGTGCTCTAAGTTCGGCTTCTGAACTGCTACGTGCCACCA CAGTCCGCTTCTTACTTCTCCATGTGACTATATAGCCCCACTCAAATGAGCAACAGCCAGTGTATGACTTTTGGTCTGTC ACGCATCCTTCCCTATCTGCATTCCTGTATACATCAATGCCCCTGTTTGAGATTTTCCTAAGTAAAGTCCTCTTTTCTGG TGTGCCTTTTAGTTAGTGGCGAATCTGTTGACAACTTTCATGTGAGTTTCAGTGGGATTTGTCCTTTAGCAACTTGTCAT ACTACAGTAAACCCGATATCGGGTCTGACTCTGGTATTAGTTAGATAGATTAGTTTTCCAACCAGACTTTGGTACCTATG TTTGTTTGTTGGATGGCCTCCTTCTTCAACGCCACTTTTCTTGACTAGTTCCATAGGGGTGTTGGGAGTCTTACACCCAT GCATACCGTTTCTTGCAGAAGATCTAATGCATACATCCTTTGAGACACATAGATCCCTTTTTATTCGAGCAACTTCCATT CCTAGGAAGTACTTAAGCCGTCCGAGGTCCATAACCTCAAAGCCCTTAGTCAAGAGCCTCTTGAGGTGGCCGATTTGTTC ATAATCATTCCCTGTTAACACAACTAAAGCATTGATGACACTGGGGAACTTCCTTTAACAACTCCTAAGATCTCTGTCTA AACTGATTAATTTACCTTGTTAACACAACTAAAGAATTGAGTACACTGGGGAACTGCCTTAATGCCTTTAACAAGTCCTA AGATCTCTGTCTAAACTGATTAATTTAACTAATTTAGATCCTGTTTGATTATGCTATTATATTGTTTCTCTTGTCCGCTT TCTGAGCTCATATAATTACTACAAACTCTGAAGTCTGATGAGTTGTAAATGTAACTTTCAGAAAACATTGTGTACAAAGC TATAACGTCTTTGACTTTCTGAGAGACGTAGTCAGCAAAGTTCCTGACTACAGCCATGGCCATGGCCATTCTGAGCCTAG TGCTGATGATCGGACCATTCCGAAAAGAAGGTATGAAGTCCAATATCCTTGATTGTTTTGCTTTGTACCCTCCTGATGTG CATTTAGCTATCTATGCACTTAACAATAGTATACACTTTTTGCAGGAAAGCTGCTGGTGATGACTGTAATGACAGTGATG AAGAGGTGAAGAGAGGCAAGATGGTAATTCCACTTTTCCTTTGTATGAAAACCTTCAGTCTTTCATTATTTTTCTCTATT GATGTTTACAATTCCCTGCCTTCAATTTCTTAAACATCGTTCAGCACCATTGGGTTGGCAGCAATCATTCAAATGTGTCT TAAACTGAATCTGTTTTCCATAAAAATGTCCATATCATTAACATAGATGTTAACTTATGTCTAACAACTTTTATGTGAAG AGAAAATCTCTACAAAAATGTTTTATCTTCACAATTGTATATTATATTCTTGACTAATGTTTTCACCCAAAAAGCCTACA ACTCCTCCACATGTTCATGTGTACCTCATTCTTCACAATATTCATGTCGGGCACCCTAAGTTGTACGAAAAAACATAATT TAGGTCTTTGTTCAACAACTGTTTTCACCATACTTGTTTGCAACTTGTGGAACGCAAGACAATCTTGAAGTCTTGCAGGA ATGAATATCTGCATGCCTAAGTCCCTTAACCTAGCCTGTTTTGTTCAATGATGTTCCTTTTCCAGCCCGAGTTGAGCCAC ACTGGCAGTACTGGTAGGGGTAGAGGCCGAGGTAGAGGAAGAGGGCGTGGTCGAGGCCGAACAGCTGTGCGAGAGACACC CCATCAGGCAGTTGAACCTGAGCCATGTGCTTCTGTTCAGCAGGGCATCCAGCATGACACAAATACAGACATGACAATAC ATGATAGTTCAGAGACAAAGGAGTTACCAAAGGAGAACGCTGCAGTTCCTGCTGAAAGCGCAGAGTTCCATAATCTTGAT CTGAATGCCAACACCAACGAAAACGAGGACAAAAAGGCAAGCACAACAGCTAAACAGGAGATATCAGAACCTCCAACAGA GAGCCAGCATGAAGAAATTCCGGGTTGGTCACTATCAGATGTGGACAAGATGGCTATTGACTCTGTGCAGCTTGCAAACC TTGGTACGCACATAGAAGAGGATGAAGAAGATTATGATGAGGAAGGGTAAATAATATCATCTATTAGTTATTAGTTAGTT AAAAGCTCATGGACAATTATGAGTATCCACTAGCTGTCGAAACATGTCCCATGCTTTTGGCTGAAAAAAAAAAGTGATCT TGATGTCCTTTTCAAGAAAAAAATTCAATATGGTTTATCCATGTTAGCCTATGTTCACGTCATGTGTAGCTTATGTATGT TAACCAGTTATGTTAGCTTTGTGTACTTGTTGTAGGCCTATAATGTATATCAAAGTTCCATATGGAGTTGATTTTATGCA TCAAAACTTAGTTTAATATAATTGGGAATAACCATAAAACTATTGCTCCATATAACCATATGGGAAGCTCAATGTTATTT CGCATATCCTTTAAATCTCAATGTATTGACAAATCTGTAAAATCATTTGAAGTTGCACATGTCTAGATCGTGGCATTATT AACCTTCTCTCGTCTTGTTAAAATGAGCTAAGTTTTTTTGAATACGAACTAGGTCAGTGAAGTAGTCATTGATCTTAAGA TGTAGAGTTTGACATGAATCAAGCCAATGCAAACGAGCTCTGCATGATAGTAAGTGTCCCGTTGTATTAAAATTCATTTT TAACTAGTGCAAGGATCTTTTGTTTGGAATACTCTTGGTGGTGTGATAAGAAGATTTCCTTTGCTTCTTTGTTTAGTGAG GTTTATCCAAGCTACGTCTTTGTGAG
CDS sequence (LotjaGi3g1v0312500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGAT AGCCCTCGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTATTTCTGCAAGATCTTTGTGATCGCACTTATGAAATAA CTCTCCAAAGAGGAGCAAAAACCATGAATTCGTTGCATTTAAAACATTGTGTACAAAGCTATAACGTCTTTGACTTTCTG AGAGACGTAGTCAGCAAAGTTCCTGACTACAGCCATGGCCATGGCCATTCTGAGCCTAGTGCTGATGATCGGACCATTCC GAAAAGAAGGAAAGCTGCTGGTGATGACTGTAATGACAGTGATGAAGAGGTGAAGAGAGGCAAGATGCCCGAGTTGAGCC ACACTGGCAGTACTGGTAGGGGTAGAGGCCGAGGTAGAGGAAGAGGGCGTGGTCGAGGCCGAACAGCTGTGCGAGAGACA CCCCATCAGGCAGTTGAACCTGAGCCATGTGCTTCTGTTCAGCAGGGCATCCAGCATGACACAAATACAGACATGACAAT ACATGATAGTTCAGAGACAAAGGAGTTACCAAAGGAGAACGCTGCAGTTCCTGCTGAAAGCGCAGAGTTCCATAATCTTG ATCTGAATGCCAACACCAACGAAAACGAGGACAAAAAGGCAAGCACAACAGCTAAACAGGAGATATCAGAACCTCCAACA GAGAGCCAGCATGAAGAAATTCCGGGTTGGTCACTATCAGATGTGGACAAGATGGCTATTGACTCTGTGCAGCTTGCAAA CCTTGGTACGCACATAGAAGAGGATGAAGAAGATTATGATGAGGAAGGGTAA
Protein sequence (LotjaGi3g1v0312500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFL RDVVSKVPDYSHGHGHSEPSADDRTIPKRRKAAGDDCNDSDEEVKRGKMPELSHTGSTGRGRGRGRGRGRGRGRTAVRET PHQAVEPEPCASVQQGIQHDTNTDMTIHDSSETKELPKENAAVPAESAEFHNLDLNANTNENEDKKASTTAKQEISEPPT ESQHEEIPGWSLSDVDKMAIDSVQLANLGTHIEEDEEDYDEEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 86 | 86 | 3.8E-30 | ||
| PANTHER | 3 | 282 | 280 | 7.6E-120 | – | |
| PANTHER | 3 | 282 | 280 | 7.6E-120 | – | |
| SUPERFAMILY | 3 | 98 | 96 | 9.84E-21 | ||
| Pfam | 8 | 71 | 64 | 2.4E-19 | ||
| MobiDBLite | 89 | 130 | 42 | - | – | |
| MobiDBLite | 89 | 250 | 162 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0312500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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