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LotjaGi3g1v0313800.4

Overview

Field Value
Gene ID LotjaGi3g1v0313800
Transcript ID LotjaGi3g1v0313800.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description DNA/RNA-binding protein KIN17; TAIR: AT1G55460.1 DNA/RNA-binding protein Kin17, conserved region; Swiss-Prot: sp|Q9ZVU5|KIN17_ARATH KIN17-like protein; TrEMBL-Plants: tr|A0A151U225|A0A151U225_CAJCA DNA/RNA-binding protein KIN17; Found in the gene: LotjaGi3g1v0313800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:66421854..66423050) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGGAAAAATGATTTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAGGACTGCAGAAGCTTCGGTGGTA TTGCCAGATGTGCCAGAAGCAATGCCGAGATGAGAATGGGTTTAAATGCCACTGCATGAGTGAAGGGCACCAACGTCAAA TGCAAGTTTTTGGGCAAAACCCAACTCGGATAATTGATGGCTATTCTGAAGAGTTTGAGAAAACATTCCTTGAGCACATG AAGCGCAGCCACCGATTCAGCCGCATAGCTGCCACTGTCGTGTATAATGAATACATAAACGATAGACACCACGTTCATAT GAACTCCACTGAGTGGGCTACGCTTACTGATTTTGTAAAGTACTTGGGTCGAACTGGCAAGTGCAAGGTTGATGAAACAC CCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAAGATGAAGAATAAGAGAATCAAG GCAGATATGGCAGATGAAGAAAAGCAAGAGAGGGAGATCATGAAACAGATTGAAAAGGCTGAGCAATTGATGCAGCCACC CAATTCCGATTCTGATCAGACTTCACAGGCTGAGCCTCCAAGGGAATTTAATGTAGAGGATGGAGTTAAGATAGGATTTT CTCTTGGGACATCAGCTAGACCTGGGACCAAGGAAAAACGTGAAGAATCGAGGGTGGCATTTGATGAGGTTGGTGAAGAG AAAAATGAGGAAAGGAATAATGGAAACAATTTGAAGAGGAAAGAAATTGGTGGTGGAAAATCGGCTTTGGATGAAATGAT GAGGGATGAAGAGAAGAAAAAGGAGAAAATGAACAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGA GCAAAGCCTTGGCAGAGAAGGGGTACTACAAGCAAAAAGGCGTAGTGCGGAAGGTGATTGACAAGTATGTTGGGGAAATA GAAATGCTTGAAAGCAAGCATGTGCTCAGGGTTGATCAGGTTGAACTCGAAACTGTGATTCCACAAGTTGGTGGCCGTGT AAAAATAGTCAATGGGGCATATCGCGGATCACTTGCTAGGCTTCTGGGGGTGGATACAGATCATTTTTGCGCTAAGGTGC AGATAGAGAAAGGTCCCTATGATGGTAGGGTCCTTAAAGCTGTGGAATATGAGGACATTTGTAAAGTAGCCCAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0313800.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGAAAAATGATTTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAGGACTGCAGAAGCTTCGGTGGTA TTGCCAGATGTGCCAGAAGCAATGCCGAGATGAGAATGGGTTTAAATGCCACTGCATGAGTGAAGGGCACCAACGTCAAA TGCAAGTTTTTGGGCAAAACCCAACTCGGATAATTGATGGCTATTCTGAAGAGTTTGAGAAAACATTCCTTGAGCACATG AAGCGCAGCCACCGATTCAGCCGCATAGCTGCCACTGTCGTGTATAATGAATACATAAACGATAGACACCACGTTCATAT GAACTCCACTGAGTGGGCTACGCTTACTGATTTTGTAAAGTACTTGGGTCGAACTGGCAAGTGCAAGGTTGATGAAACAC CCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAAGATGAAGAATAAGAGAATCAAG GCAGATATGGCAGATGAAGAAAAGCAAGAGAGGGAGATCATGAAACAGATTGAAAAGGCTGAGCAATTGATGCAGCCACC CAATTCCGATTCTGATCAGACTTCACAGGCTGAGCCTCCAAGGGAATTTAATGTAGAGGATGGAGTTAAGATAGGATTTT CTCTTGGGACATCAGCTAGACCTGGGACCAAGGAAAAACGTGAAGAATCGAGGGTGGCATTTGATGAGGTTGGTGAAGAG AAAAATGAGGAAAGGAATAATGGAAACAATTTGAAGAGGAAAGAAATTGGTGGTGGAAAATCGGCTTTGGATGAAATGAT GAGGGATGAAGAGAAGAAAAAGGAGAAAATGAACAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGA GCAAAGCCTTGGCAGAGAAGGGGTACTACAAGCAAAAAGGCGTAGTGCGGAAGGTGATTGACAAGTATGTTGGGGAAATA GAAATGCTTGAAAGCAAGCATGTGCTCAGGGTTGATCAGGTTGAACTCGAAACTGTGATTCCACAAGTTGGTGGCCGTGT AAAAATAGTCAATGGGGCATATCGCGGATCACTTGCTAGGCTTCTGGGGGTGGATACAGATCATTTTTGCGCTAAGGTGC AGATAGAGAAAGGTCCCTATGATGGTAGGGTCCTTAAAGCTGTGGAATATGAGGACATTTGTAAAGTAGCCCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0313800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQVFGQNPTRIIDGYSEEFEKTFLEHM KRSHRFSRIAATVVYNEYINDRHHVHMNSTEWATLTDFVKYLGRTGKCKVDETPKGWFITYIDRDSETLFKEKMKNKRIK ADMADEEKQEREIMKQIEKAEQLMQPPNSDSDQTSQAEPPREFNVEDGVKIGFSLGTSARPGTKEKREESRVAFDEVGEE KNEERNNGNNLKRKEIGGGKSALDEMMRDEEKKKEKMNRKDYWLHEGIVVKVMSKALAEKGYYKQKGVVRKVIDKYVGEI EMLESKHVLRVDQVELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDHFCAKVQIEKGPYDGRVLKAVEYEDICKVAQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12805
1 396 396 2.4E-181
IPR037321
SUPERFAMILY
SSF57667
26 64 39 4.76E-6
IPR036236
Pfam
PF10357
52 177 126 2.8E-48
IPR019447
SMART
SM01253
52 178 127 2.5E-82
IPR019447
Gene3D
G3DSA:1.10.10.2030
60 160 101 1.6E-43
IPR038254
Coils
Coil
156 183 28 - –
MobiDBLite
mobidb-lite
181 274 94 - –
MobiDBLite
mobidb-lite
182 200 19 - –
MobiDBLite
mobidb-lite
221 274 54 - –
Coils
Coil
260 280 21 - –
Pfam
PF18131
279 332 54 2.4E-23
IPR041330
Gene3D
G3DSA:2.30.30.140
287 340 54 1.3E-23 –
Gene3D
G3DSA:2.30.30.30
341 397 57 4.6E-25
IPR014722
CDD
cd13155
343 396 54 6.82481E-25
IPR041995

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0313800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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