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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0316800 |
| Transcript ID | LotjaGi3g1v0316800.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT5G06950.1 bZIP transcription factor family protein; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0316800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:67110541..67115071) extracted from Lotus japonicus Gifu genome v1.2.
AGATCAGAGCAGAAGCTTTGTCCGATATTCTTGACAGTCTAACGTTTGATATGTGCTATATTTGCAGTTTGATAGGAGTG CCCTTGCTGCTGTGGCTTCTGACTCCAGTGATAGATCAAAGGATAAATCAGATCAGAAGGTTAATATATATTAAAAACTT ATTGCATGGATAATATCTATAGTTCTAAATAGTTTTTGTCATATGATCTTTTCTTTTTTTATTATTGTAGACTCTTCGCA GGCTTGCTCAGAATCGTGAGGCGGCCAGAAAAAGCCGGTTGAGAAAGAAAGTAAGGGTTATTTTAATTGCATTTGTTCAT TTAATATTTATTCTCGAGTGTATATTTTATTGTTTCCCAATAGAAGTATTGTTCTCATGTCATATAGACATAGTATAGAG ATAGTTCAAAGTCAGGATTTGATTTTCAGTTAGAAAACTGAAAATAGATAGGGAAAATGAGTAAATTCTAGTTCTTCTTG TTGTGCCATATATTCTCATTTACATGGTTATACATATTTGGACAATCAGTTTGGATCTACAGATTGTGACATGCTTGACT GTGCATTGGACCATTAAGCTCTATTCCATAACTCTTGATGATTCCAAGAAACTTGTTCATAGAAACTTGTTAAGGCATGT TAGTCATGTACTCTGTTCCAGTATCTGGCCCATGACAGCATGATTGAATGTTTGTGATATCAATAATATTTTCTAAAGTG ATGGAAATTTGTGTTTCTTCTTTTCTGTAAGTTGAAAATGGCAATGGGCATATTGATCAGAAAGGAAGTCTGTAGAAAAA CAAAGTCGGGTTTTCCTCCTCTATAATTTTGGAACTATATTTTTGATAGAAAGCTACTCTTATTTCAACCTTCCTTCATA GCAATGCTTAGGTTTTTTACTTGGTGTTTAATCCTATACTACATACTATTTCCGAAAACAAAAAGTGGCAACTCCGACAA GTGTCAATCCCTCATTCTATGTCTTTCTTCATTAGTTTTCTCTCTCATACTATAATTAGTAGGAAGAGGATGTCATATTT ATATTTTCTGATTTTTTAGTAATTTAAATATTAAATAATTCCATATTTTCAAAAATAATTAATGTATTAATATTGCATTT AATAGTTATTACTGGCATTGAAATAATTAACAAAAGTCAATTGTGACTTTTTTCAAAAATAACTATTGTATTAATTTGAC ATTTAATGGTTTTTAATGACATTAGAATAATAAAAGTCAATTGCGACTTTTCTACCATTATGATGTATGTTGACAAAGCC TTTTTTAATGATTATGGTTATTTTTATATTACAAAATAAATAAATAAATTGAATGTAATCTTACGTTCAAAATGATATCA AATATGCAATAAAAAATTGATATCAAATAGTTTTAAAGAATTGATTTGGAAATAAACTAAAAAATTTTGTGTAACAAAAA AAAAATCAAAAAATTTGTATTTTATGTTTTCCTATATACATATGAAAGATTAAAATGGAAATTGGTATAATGATTTAAAA CATAATAAATTAGAAAAAAAAAGGAATTAGAATGTAACTAGGATTAGAAAAAAAAGTTAAATAGATGATGTGCGTATTTA AAAAAGAAAGACAAAAGAGGAAATATGAAATATCTAATGTGATGTATGACGACAAAATTCGCTTATTTCATCCGTGCATA GCGCGGGATCAATACTAGTAGAAACTGAATTAAAAATTGATGAATTACTCTCTTCTTTAGGGTTATGCTGCTAGAAAAAT CTTTTACTTGTGTTTTCATAGTAAATTGCTATACAGTGGAATCCAATAACTCCTTTATAATGTTTAATTTAATTTGCTCT ATGATAGTTGTAAGAAATAAGTATGCTTACATTCCTTACTTGACCATTAAAATGCACGACATGATACCATAAGATCATTT TTTTTCACAGTATTCATATATCAGTGGCTTTTTTACATAGGCCTATGTCCAACAACTGGAAAGTAGTCGTTTGAAGCTGA CCCAGCTAGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGTTATATTCATTTAATCCTTGTAATGAGAATGTATCCATTGT ATGTTCCCTCCCCCCTCCCTCCTCCCTCATTCCCCTTTTATTTTGTGGGCGACACATTTACTTGATAGTCATTTCCGAAG TTAAACCAAAATCTCTTGTTTCTTCCTGTAGGGGGTCTTCATATCAAGCTCAGGCGATCAGGCACATACAATGGGTGGAA ATGGTATCTTATTTCTAAAATTCGCTTACTCATTCGGATAGATAAAATGTGTCTAAAACATTGTAGTATAATTTGTCTGT TATATTATAACATGATATTTCATTAAAATATTAATTTATCTACTTTAATGTTAGGTAGTCCTTAATCATCATCTCATTGT TCTACAGGGGCTATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTCAGAGC AGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTA GGCTGAAAGGTGTTGCAGCAAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGCTTT TTGTGGCTGGGTGGTTTTCGGCCATCTGAACTCCTCAAGGTGATCTTATTCTGACTCTGTTCTTTCTGGATCTCATTGGT TAGAAAATGGGTTTTCCTGATCTGTACTATGTCCTGGTAATATAAAGAGTAAATTCTTAGGTTTTTGGGATTATTTCAAG TTAAATGCAAAATTTTGTGAAAAAGAAGTTTATATAAGCATGCTGGGTTGGCTTGTTGCATATATGTTTTTAGTTGCTGC TTCACACTGATGAAGAACCTAAATGAATGATGTCAAAGTATTGCATATGACTTAACGTGGAAATTCTCCTTTGATACTGC TGATGGTCCGTGTGGTTTTGACTTTCAATTGGAACTAGTATGGAGTTAGATATACTTGTGACCTCCACACAAATGATAAG ACAAGGGTTAGGTGGTAGAAAATAAAATAGTGGGTTGGCTTCTCTATTGATTCTACTCTTCTTTCCCTAGAATCTGTCAT TACTTTTTATCCCTCAAGTTCAATGGTCGTGCATAAACTAATTTGAACTTTCATTACCGGTATTCTGCTTGTTATGCTTA TCTATAATATTCCTTACGCTCAACAATTGTATCAAGTTTAGTATTTACAACCAGTTTTTGAATAATGCTTTGTAGTTGTT GGTGTTGCCCTTATATTATATGTATATAATTTTTAAGATATAACTACAACTTCAATATTTTATTCTCGTGCCACTTGCAC TCTGCATTTCTTTGAATATGGGCAAATCCCCGTTTTCTGCTGATACTTGGCTAATCTTGTAGTGCTTCAAAATCAATTGA ACCCTAAATCTCTGACTTATTTTGAAGCTGTATAAATATTACTGTAAGAATAAGAATCTGCTTCGGTGGTGGGAGCTAGA TGTCAAAAGGAAGAATAATAAATAATAATTAGCATGGGTTATATCTAAATCCCTGAGCCACATAAGTCTTAGCTTTTTAC TTGATTATTATGCTGATACGTGATTCATATAGTCATGGTTGTCTTGAACTTTTCAAATTCATGTTTCTCATAATTCTGAG AACCTAGTTTTTATTTCCCAGTTCTGGAGTCATTTTATAGTTTCCTTACCTTTAACCTGAGTGCCACAAATTTGGTTGCA GCTCCTGGTAAATCAGTTGGAACCTCTCACAGAGCAGCAACTGATGGGTATTACCAACTTGCAGCAGTCCTCTCAACAAG GAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTGCGGAGACATTGTCCACTGGAACCCCTGCCTCA TCTGGTTCCTCTGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTCGACGGGTT TATTCGACAGGTATATTTCTCTTATCATTCTATGCAGATAGTTTGGTGTTTTTGTTGAATAGAATAGACGTGCCTTTTAA TCCAGCCACAGTTTCCTCACATTATTTACAGTTTATAATGATCTTGCTCCATCCTCCCTGAGATTTTCTGGAGTGAAAGT GGTTGAAATTTTGTATTGTTGAAACTTGAAACTGTTGGAACTGGTCTACATTAGAATTTTTATCTGCATGTGCCTTGTAA CCAGATTTGACATCTTTAGTAGTGCTGTTTATTGCTATTGTCTGAACTCATGGCAATTTAGCTTCATTTCATTATTTAGG AAAAAAAATTCCTATCATAATATCTTAATATGGATCCCATTTCTGTTGTGTTCATGGTTATAAGGCTGACAATCTGCGCC AGCAAACTCTCCAGCAAATGCACCGGATACTGACAACTCGGCAATCAGCCCGCGCCCTCCTTGCTATAACTGACTACTTT TCGCGGCTGCGTGCTCTCAGTTCGCTCTGGCTGGCCCGCCCAAGAGATTAA
CDS sequence (LotjaGi3g1v0316800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGAAATGGGGCTATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCT CAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGA TTTTTAGGCTGAAAGGTGTTGCAGCAAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGG TGCTTTTTGTGGCTGGGTGGTTTTCGGCCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTCACAGAGCA GCAACTGATGGGTATTACCAACTTGCAGCAGTCCTCTCAACAAGGAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGC AACAGTCCCTTGCGGAGACATTGTCCACTGGAACCCCTGCCTCATCTGGTTCCTCTGGGAATGTGGCAAATTACATGGGT CAAATGGCTATGGCCATGGGTAAGCTAGGGACACTCGACGGGTTTATTCGACAGGCTGACAATCTGCGCCAGCAAACTCT CCAGCAAATGCACCGGATACTGACAACTCGGCAATCAGCCCGCGCCCTCCTTGCTATAACTGACTACTTTTCGCGGCTGC GTGCTCTCAGTTCGCTCTGGCTGGCCCGCCCAAGAGATTAA
Protein sequence (LotjaGi3g1v0316800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAER CFLWLGGFRPSELLKLLVNQLEPLTEQQLMGITNLQQSSQQGEDALSQGMEALQQSLAETLSTGTPASSGSSGNVANYMG QMAMAMGKLGTLDGFIRQADNLRQQTLQQMHRILTTRQSARALLAITDYFSRLRALSSLWLARPRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 226 | 226 | 3.0E-153 | – | |
| PANTHER | 1 | 226 | 226 | 3.0E-153 | – | |
| ProSiteProfiles | 6 | 223 | 218 | 34.8 | ||
| Coils | 17 | 37 | 21 | - | – | |
| Pfam | 23 | 98 | 76 | 1.5E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0316800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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