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LotjaGi3g1v0316800.3

Overview

Field Value
Gene ID LotjaGi3g1v0316800
Transcript ID LotjaGi3g1v0316800.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|A0A0L9V351|A0A0L9V351_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0316800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:67110541..67115333) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGTTGACACTGATGACAGGAATCAACGGGTGATGTTTCTTTA CCTTTTATGTTATCTTCTCCCTTATTGTTCACTTGATAATATCTCAAGTCTCTATCCTAAATTTGCACATCTTGCAACCA GTTCAAGTTAATCTTGTCAACTAGGATCCAACTGCAGAATTGAACTGAATCTATTTAGTATTCAAACATAATGAGAAGAA GTCTTTTTGGGGTCTGTTCTTTAGATCAGAGCAGAAGCTTTGTCCGATATTCTTGACAGTCTAACGTTTGATATGTGCTA TATTTGCAGTTTGATAGGAGTGCCCTTGCTGCTGTGGCTTCTGACTCCAGTGATAGATCAAAGGATAAATCAGATCAGAA GGTTAATATATATTAAAAACTTATTGCATGGATAATATCTATAGTTCTAAATAGTTTTTGTCATATGATCTTTTCTTTTT TTATTATTGTAGACTCTTCGCAGGCTTGCTCAGAATCGTGAGGCGGCCAGAAAAAGCCGGTTGAGAAAGAAAGTAAGGGT TATTTTAATTGCATTTGTTCATTTAATATTTATTCTCGAGTGTATATTTTATTGTTTCCCAATAGAAGTATTGTTCTCAT GTCATATAGACATAGTATAGAGATAGTTCAAAGTCAGGATTTGATTTTCAGTTAGAAAACTGAAAATAGATAGGGAAAAT GAGTAAATTCTAGTTCTTCTTGTTGTGCCATATATTCTCATTTACATGGTTATACATATTTGGACAATCAGTTTGGATCT ACAGATTGTGACATGCTTGACTGTGCATTGGACCATTAAGCTCTATTCCATAACTCTTGATGATTCCAAGAAACTTGTTC ATAGAAACTTGTTAAGGCATGTTAGTCATGTACTCTGTTCCAGTATCTGGCCCATGACAGCATGATTGAATGTTTGTGAT ATCAATAATATTTTCTAAAGTGATGGAAATTTGTGTTTCTTCTTTTCTGTAAGTTGAAAATGGCAATGGGCATATTGATC AGAAAGGAAGTCTGTAGAAAAACAAAGTCGGGTTTTCCTCCTCTATAATTTTGGAACTATATTTTTGATAGAAAGCTACT CTTATTTCAACCTTCCTTCATAGCAATGCTTAGGTTTTTTACTTGGTGTTTAATCCTATACTACATACTATTTCCGAAAA CAAAAAGTGGCAACTCCGACAAGTGTCAATCCCTCATTCTATGTCTTTCTTCATTAGTTTTCTCTCTCATACTATAATTA GTAGGAAGAGGATGTCATATTTATATTTTCTGATTTTTTAGTAATTTAAATATTAAATAATTCCATATTTTCAAAAATAA TTAATGTATTAATATTGCATTTAATAGTTATTACTGGCATTGAAATAATTAACAAAAGTCAATTGTGACTTTTTTCAAAA ATAACTATTGTATTAATTTGACATTTAATGGTTTTTAATGACATTAGAATAATAAAAGTCAATTGCGACTTTTCTACCAT TATGATGTATGTTGACAAAGCCTTTTTTAATGATTATGGTTATTTTTATATTACAAAATAAATAAATAAATTGAATGTAA TCTTACGTTCAAAATGATATCAAATATGCAATAAAAAATTGATATCAAATAGTTTTAAAGAATTGATTTGGAAATAAACT AAAAAATTTTGTGTAACAAAAAAAAAATCAAAAAATTTGTATTTTATGTTTTCCTATATACATATGAAAGATTAAAATGG AAATTGGTATAATGATTTAAAACATAATAAATTAGAAAAAAAAAGGAATTAGAATGTAACTAGGATTAGAAAAAAAAGTT AAATAGATGATGTGCGTATTTAAAAAAGAAAGACAAAAGAGGAAATATGAAATATCTAATGTGATGTATGACGACAAAAT TCGCTTATTTCATCCGTGCATAGCGCGGGATCAATACTAGTAGAAACTGAATTAAAAATTGATGAATTACTCTCTTCTTT AGGGTTATGCTGCTAGAAAAATCTTTTACTTGTGTTTTCATAGTAAATTGCTATACAGTGGAATCCAATAACTCCTTTAT AATGTTTAATTTAATTTGCTCTATGATAGTTGTAAGAAATAAGTATGCTTACATTCCTTACTTGACCATTAAAATGCACG ACATGATACCATAAGATCATTTTTTTTCACAGTATTCATATATCAGTGGCTTTTTTACATAGGCCTATGTCCAACAACTG GAAAGTAGTCGTTTGAAGCTGACCCAGCTAGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGTTATATTCATTTAATCCTT GTAATGAGAATGTATCCATTGTATGTTCCCTCCCCCCTCCCTCCTCCCTCATTCCCCTTTTATTTTGTGGGCGACACATT TACTTGATAGTCATTTCCGAAGTTAAACCAAAATCTCTTGTTTCTTCCTGTAGGGGGTCTTCATATCAAGCTCAGGCGAT CAGGCACATACAATGGGTGGAAATGGTATCTTATTTCTAAAATTCGCTTACTCATTCGGATAGATAAAATGTGTCTAAAA CATTGTAGTATAATTTGTCTGTTATATTATAACATGATATTTCATTAAAATATTAATTTATCTACTTTAATGTTAGGTAG TCCTTAATCATCATCTCATTGTTCTACAGGGGCTATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATC GACAAATTAATGAGCTCAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTG GCACATTATGATGAGATTTTTAGGCTGAAAGGTGTTGCAGCAAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAA AACGCCTGCTGAGAGGTGCTTTTTGTGGCTGGGTGGTTTTCGGCCATCTGAACTCCTCAAGGTGATCTTATTCTGACTCT GTTCTTTCTGGATCTCATTGGTTAGAAAATGGGTTTTCCTGATCTGTACTATGTCCTGGTAATATAAAGAGTAAATTCTT AGGTTTTTGGGATTATTTCAAGTTAAATGCAAAATTTTGTGAAAAAGAAGTTTATATAAGCATGCTGGGTTGGCTTGTTG CATATATGTTTTTAGTTGCTGCTTCACACTGATGAAGAACCTAAATGAATGATGTCAAAGTATTGCATATGACTTAACGT GGAAATTCTCCTTTGATACTGCTGATGGTCCGTGTGGTTTTGACTTTCAATTGGAACTAGTATGGAGTTAGATATACTTG TGACCTCCACACAAATGATAAGACAAGGGTTAGGTGGTAGAAAATAAAATAGTGGGTTGGCTTCTCTATTGATTCTACTC TTCTTTCCCTAGAATCTGTCATTACTTTTTATCCCTCAAGTTCAATGGTCGTGCATAAACTAATTTGAACTTTCATTACC GGTATTCTGCTTGTTATGCTTATCTATAATATTCCTTACGCTCAACAATTGTATCAAGTTTAGTATTTACAACCAGTTTT TGAATAATGCTTTGTAGTTGTTGGTGTTGCCCTTATATTATATGTATATAATTTTTAAGATATAACTACAACTTCAATAT TTTATTCTCGTGCCACTTGCACTCTGCATTTCTTTGAATATGGGCAAATCCCCGTTTTCTGCTGATACTTGGCTAATCTT GTAGTGCTTCAAAATCAATTGAACCCTAAATCTCTGACTTATTTTGAAGCTGTATAAATATTACTGTAAGAATAAGAATC TGCTTCGGTGGTGGGAGCTAGATGTCAAAAGGAAGAATAATAAATAATAATTAGCATGGGTTATATCTAAATCCCTGAGC CACATAAGTCTTAGCTTTTTACTTGATTATTATGCTGATACGTGATTCATATAGTCATGGTTGTCTTGAACTTTTCAAAT TCATGTTTCTCATAATTCTGAGAACCTAGTTTTTATTTCCCAGTTCTGGAGTCATTTTATAGTTTCCTTACCTTTAACCT GAGTGCCACAAATTTGGTTGCAGCTCCTGGTAAATCAGTTGGAACCTCTCACAGAGCAGCAACTGATGGGTATTACCAAC TTGCAGCAGTCCTCTCAACAAGGAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTGCGGAGACATT GTCCACTGGAACCCCTGCCTCATCTGGTTCCTCTGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTA AGCTAGGGACACTCGACGGGTTTATTCGACAGGTATATTTCTCTTATCATTCTATGCAGATAGTTTGGTGTTTTTGTTGA ATAGAATAGACGTGCCTTTTAATCCAGCCACAGTTTCCTCACATTATTTACAGTTTATAATGATCTTGCTCCATCCTCCC TGAGATTTTCTGGAGTGAAAGTGGTTGAAATTTTGTATTGTTGAAACTTGAAACTGTTGGAACTGGTCTACATTAGAATT TTTATCTGCATGTGCCTTGTAACCAGATTTGACATCTTTAGTAGTGCTGTTTATTGCTATTGTCTGAACTCATGGCAATT TAGCTTCATTTCATTATTTAGGAAAAAAAATTCCTATCATAATATCTTAATATGGATCCCATTTCTGTTGTGTTCATGGT TATAAGGCTGACAATCTGCGCCAGCAAACTCTCCAGCAAATGCACCGGATACTGACAACTCGGCAATCAGCCCGCGCCCT CCTTGCTATAACTGACTACTTTTCGCGGCTGCGTGCTCTCAGTTCGCTCTGGCTGGCCCGCCCAAGAGATTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0316800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGTTGACACTGATGACAGGAATCAACGGTTTGATAGGAGTGC CCTTGCTGCTGTGGCTTCTGACTCCAGTGATAGATCAAAGGATAAATCAGATCAGAAGACTCTTCGCAGGCTTGCTCAGA ATCGTGAGGCGGCCAGAAAAAGCCGGTTGAGAAAGAAAGCCTATGTCCAACAACTGGAAAGTAGTCGTTTGAAGCTGACC CAGCTAGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGGGTCTTCATATCAAGCTCAGGCGATCAGGCACATACAATGGG TGGAAATGGGGCTATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTCAGAG CAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTT AGGCTGAAAGGTGTTGCAGCAAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGCTT TTTGTGGCTGGGTGGTTTTCGGCCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTCACAGAGCAGCAAC TGATGGGTATTACCAACTTGCAGCAGTCCTCTCAACAAGGAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAG TCCCTTGCGGAGACATTGTCCACTGGAACCCCTGCCTCATCTGGTTCCTCTGGGAATGTGGCAAATTACATGGGTCAAAT GGCTATGGCCATGGGTAAGCTAGGGACACTCGACGGGTTTATTCGACAGGCTGACAATCTGCGCCAGCAAACTCTCCAGC AAATGCACCGGATACTGACAACTCGGCAATCAGCCCGCGCCCTCCTTGCTATAACTGACTACTTTTCGCGGCTGCGTGCT CTCAGTTCGCTCTGGCTGGCCCGCCCAAGAGATTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0316800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADASPRTDISTDVDTDDRNQRFDRSALAAVASDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLT QLEQELQRARQQGVFISSSGDQAHTMGGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIF RLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRPSELLKLLVNQLEPLTEQQLMGITNLQQSSQQGEDALSQGMEALQQ SLAETLSTGTPASSGSSGNVANYMGQMAMAMGKLGTLDGFIRQADNLRQQTLQQMHRILTTRQSARALLAITDYFSRLRA LSSLWLARPRD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 48 48 - –
PANTHER
PTHR45693:SF12
3 331 329 2.6E-214 –
PANTHER
PTHR45693
3 331 329 2.6E-214 –
MobiDBLite
mobidb-lite
10 24 15 - –
SMART
SM00338
42 105 64 1.5E-7
IPR004827
Pfam
PF07716
42 88 47 4.2E-7
IPR004827
ProSiteProfiles
PS50217
44 88 45 9.415
IPR004827
SUPERFAMILY
SSF57959
46 89 44 4.5E-7 –
Gene3D
G3DSA:1.20.5.170
46 94 49 7.0E-10 –
ProSitePatterns
PS00036
49 64 16 -
IPR004827
Coils
Coil
65 92 28 - –
ProSiteProfiles
PS51806
111 328 218 34.8
IPR025422
Coils
Coil
122 142 21 - –
Pfam
PF14144
128 203 76 3.0E-34
IPR025422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0316800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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