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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0316800 |
| Transcript ID | LotjaGi3g1v0316800.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1; TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0316800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:67110541..67118366) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATGAGGAAGAGTACAAGGGTTGGTGTTGAAAATGACAAAGGAGCAGAAAGAGGGATGCCAAGCTTCAATTCTGAGC TACCCTTTTCCAACACATGGTATTCTTTCCCCTTTGCAGTTATTCACTCAGTTTAAGACTTGAATATGCAGATTTTTAGT GATTTATTTGCTAAATTTTTGTTGTGAATGTTGGCTAATTTAATAGTTATCCTTTTAGATTGAGATGTTTCTTACTCCTT TAATGATACATTCAGAATGATTCTGTGAATATCTATAATACTTTGATTTTCATTGTTGCTTGGGTTTGTGTTGTTTTGAT TGAGGAATAGATACTGAAGGGTTTTGTACTTCTACTATTCTTTCCAGTTTGTTTGAATGGAACTATATAAATTTGAAATC AACATCTGCCCTTGTAATTGGAAATAAGTTAGTATTTTTCTTCTCCTTGAGTCCCAATTCCTTGTGAAGGTAGTTTCAGA TTAAGATCATAGGGCTATGCGTAGAGATTAGAGATGATTTCAGCAAAACTCACAGTTGTAGCACCGTTGCCCTAGATTTA ATTTAAAAGCCTTCTGCTTTAGTTGGGCAAGCTGAACTAAGATAATTACTGTTTCATCTTCAATTTTATTTTTAGTTCGG GATCACCATGATTGGTTTAATCAACATAAGCCCATTACACCTTGATGGACTAAAGTACTGTGTTAGGAGTAACAGTGAAT GTCTTCCTGGCGGTTAGAGTGAGGCTTTATGCTTCAGGTTTTGCACTCTATGTTAAACTTCAACATGTTGAGAATTGTAT ATAGAATCTTGAGAATGAGTATCTTTAGATTGTTAGAAGTCCCACATTGGCTAGAGATAGAGCATAGATAGCCTTTATAA GGGTAGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATATAGATAAGCTAAT TCACAGAAAAGGCGATTTTTTTTGTATTTAGGAGTAGATGGATCAGAGATTCAGAATATGATAATTTGGTTGAAGTCTTG GATAGAAACCAAAATTAGTAGTACTGTTGCAGCTATTCTTTGTAAATGCATTTGAGCTAGTTGGATGATGGTGGCAAGCA AGTTTTGTTGCTATTGGGAATTAGCTTTGTTGATCGAAATTCAGCATGCTCCCACAACTTTCAGTTTATCTTGTTTACTA GTTACTTAGACATGTTTTCTTGTGGTTAAGGAGCCACATATGTTGGGCTTTGAGCCAATTATTGGCTTGTCATAATCTTG CAGACTGAGGTAGATAATTTGCTCTCTCTCTCTCTCTCTTGATATGTAGGCCAAGGATAAAGAGAAACTTCGTCTCCCTT TTAGGTCAAAAGAGAGTCCAAAATCATTTTGGCTTTAGTTTTGATTAAGGAGCTGTAATGTTATGATATAAAAGTGTCTT GTGGTTAAGAAGCTGCATTTGTTGCCCTTGAACATATTGCTGGCCAGTCATAATCTTGAAGACTGAGTGGTAGTAGTTTG TTCTCTTTCTTGATGTGTAGGCCAAGGATAAAGAGAAAATTTGTCAGGATCCTAAGGTCAAAAGAAAGTTAACAGACAAA TATTAAGTATATATGTCTATTTAAGGAGTCCAAAAGTCTTTTTGACTTCAGTTTTACTGAGGAGCTTTGTCGTTATGATA TAGGAGTTTCTGATCATTTTTTTTGTTTTGCATTTATTTATGTGGTGTTGTTAAAGAAAATAATTTGGTGGACTGCGAAT AATGATTTTGTTTGATTTTCTATCGTTAAAATTGATAAGTCATTATGATTTTTAACATTTTTTTCTTCAATGCTTTGAAA ATGTTTTTACAAAGTATATTGAAAGCCAAGAATCTTCTAACTCACTTTCATTCCCTTTCCAATATGACTCATGAGTAAAG TCCCTCTCAAGTTACTCCTTTTAATAGAAATTTGGAATTTTGTTTTAGCAATTATAAACTTCGACAGGGAACCTAATTCT GTGTTTTATTTTTATTTATTTTTTCAGTGGTCAACTTATTGATGACTTTTATTTTTATGTAATTTTCTCTGAATTTAACA TAAATACTGACTTGTATTAGCCTAAATCTGAAAAATTTGGATTTCAGCGATTCAGAGTGGAGAACAGTTGATTCTTTTCA TGTTTCTGACTTTGGAGCATTTGATCAATCATATCGCTTAGAGGATGCTGTTGATCTAGGTGGAAGTAAGTCTTCCTGCA ATCCAACATAGCAAAGTTTACATGTAACAAGCAAATACGTATCTCTTATTGTCTCTTGTCATGAAACATCAAATAATCCT TAGAACTATGCAATGGTTGCTCTTTGCAATCTGTTAGTACACAGCTACCTAGAGCCTGCTTGTCAGCCACCGAAAACGGA AATAACTTCTGTTTGGTAGAAGGAGAGTAGTTCTTACTTTTCCGTTTTAAGGATGAAAATGATGAGAGGTTGTTACACAT ACAGGGTCTTATTCGCTAATTGGCAAAGATAAGGTTAAGATGAAGGAATAATCTCACTCACAGAAGGACATGTCCGCCTA TGCGCCTATGTACATGTGTTACTGTTGACTAAACTCCTATATATTAATGTCTAGCCTGGTTATCTGTTTTTTAATTCTTG TGAGAATATATAGTTTTTGTTTCCAGTCTTTCCTTCAACAAATGATTTTTCCTGATATTTGATTCAGATTCAGTTTTTGA CTCGCTAAAACTAAGTGGCCAAACTACTTTTCCGGGTTCTGTTTACATCGGTAATCTTCATAAGGTGAGCTTTTCTAGTT ATTTTCATCTAATTAACTTCCTAATTTGGTATCTAAGATGGAGATTAGCAGTCTACAGTATGTCTTATTTCCAGCTTTCC ATTCTTTTCTCTTTAATTTAGTTACCAACTTCAGTTGATAAAAGCTCACTGACGAACCAAACAGAGCAGTGTAGACTGCA ATTACAAAAGGTTCAATCATCAAATCCTGGAACCATATTAGTTGGTGATACAGAAATTCTTGAAGAGCCTACCATGGCTG ATGCCAGTCCTAGGACTGATATTTCTACAGATGTTGACACTGATGACAGGAATCAACGGGTGATGTTTCTTTACCTTTTA TGTTATCTTCTCCCTTATTGTTCACTTGATAATATCTCAAGTCTCTATCCTAAATTTGCACATCTTGCAACCAGTTCAAG TTAATCTTGTCAACTAGGATCCAACTGCAGAATTGAACTGAATCTATTTAGTATTCAAACATAATGAGAAGAAGTCTTTT TGGGGTCTGTTCTTTAGATCAGAGCAGAAGCTTTGTCCGATATTCTTGACAGTCTAACGTTTGATATGTGCTATATTTGC AGTTTGATAGGAGTGCCCTTGCTGCTGTGGCTTCTGACTCCAGTGATAGATCAAAGGATAAATCAGATCAGAAGGTTAAT ATATATTAAAAACTTATTGCATGGATAATATCTATAGTTCTAAATAGTTTTTGTCATATGATCTTTTCTTTTTTTATTAT TGTAGACTCTTCGCAGGCTTGCTCAGAATCGTGAGGCGGCCAGAAAAAGCCGGTTGAGAAAGAAAGTAAGGGTTATTTTA ATTGCATTTGTTCATTTAATATTTATTCTCGAGTGTATATTTTATTGTTTCCCAATAGAAGTATTGTTCTCATGTCATAT AGACATAGTATAGAGATAGTTCAAAGTCAGGATTTGATTTTCAGTTAGAAAACTGAAAATAGATAGGGAAAATGAGTAAA TTCTAGTTCTTCTTGTTGTGCCATATATTCTCATTTACATGGTTATACATATTTGGACAATCAGTTTGGATCTACAGATT GTGACATGCTTGACTGTGCATTGGACCATTAAGCTCTATTCCATAACTCTTGATGATTCCAAGAAACTTGTTCATAGAAA CTTGTTAAGGCATGTTAGTCATGTACTCTGTTCCAGTATCTGGCCCATGACAGCATGATTGAATGTTTGTGATATCAATA ATATTTTCTAAAGTGATGGAAATTTGTGTTTCTTCTTTTCTGTAAGTTGAAAATGGCAATGGGCATATTGATCAGAAAGG AAGTCTGTAGAAAAACAAAGTCGGGTTTTCCTCCTCTATAATTTTGGAACTATATTTTTGATAGAAAGCTACTCTTATTT CAACCTTCCTTCATAGCAATGCTTAGGTTTTTTACTTGGTGTTTAATCCTATACTACATACTATTTCCGAAAACAAAAAG TGGCAACTCCGACAAGTGTCAATCCCTCATTCTATGTCTTTCTTCATTAGTTTTCTCTCTCATACTATAATTAGTAGGAA GAGGATGTCATATTTATATTTTCTGATTTTTTAGTAATTTAAATATTAAATAATTCCATATTTTCAAAAATAATTAATGT ATTAATATTGCATTTAATAGTTATTACTGGCATTGAAATAATTAACAAAAGTCAATTGTGACTTTTTTCAAAAATAACTA TTGTATTAATTTGACATTTAATGGTTTTTAATGACATTAGAATAATAAAAGTCAATTGCGACTTTTCTACCATTATGATG TATGTTGACAAAGCCTTTTTTAATGATTATGGTTATTTTTATATTACAAAATAAATAAATAAATTGAATGTAATCTTACG TTCAAAATGATATCAAATATGCAATAAAAAATTGATATCAAATAGTTTTAAAGAATTGATTTGGAAATAAACTAAAAAAT TTTGTGTAACAAAAAAAAAATCAAAAAATTTGTATTTTATGTTTTCCTATATACATATGAAAGATTAAAATGGAAATTGG TATAATGATTTAAAACATAATAAATTAGAAAAAAAAAGGAATTAGAATGTAACTAGGATTAGAAAAAAAAGTTAAATAGA TGATGTGCGTATTTAAAAAAGAAAGACAAAAGAGGAAATATGAAATATCTAATGTGATGTATGACGACAAAATTCGCTTA TTTCATCCGTGCATAGCGCGGGATCAATACTAGTAGAAACTGAATTAAAAATTGATGAATTACTCTCTTCTTTAGGGTTA TGCTGCTAGAAAAATCTTTTACTTGTGTTTTCATAGTAAATTGCTATACAGTGGAATCCAATAACTCCTTTATAATGTTT AATTTAATTTGCTCTATGATAGTTGTAAGAAATAAGTATGCTTACATTCCTTACTTGACCATTAAAATGCACGACATGAT ACCATAAGATCATTTTTTTTCACAGTATTCATATATCAGTGGCTTTTTTACATAGGCCTATGTCCAACAACTGGAAAGTA GTCGTTTGAAGCTGACCCAGCTAGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGTTATATTCATTTAATCCTTGTAATGA GAATGTATCCATTGTATGTTCCCTCCCCCCTCCCTCCTCCCTCATTCCCCTTTTATTTTGTGGGCGACACATTTACTTGA TAGTCATTTCCGAAGTTAAACCAAAATCTCTTGTTTCTTCCTGTAGGGGGTCTTCATATCAAGCTCAGGCGATCAGGCAC ATACAATGGGTGGAAATGGTATCTTATTTCTAAAATTCGCTTACTCATTCGGATAGATAAAATGTGTCTAAAACATTGTA GTATAATTTGTCTGTTATATTATAACATGATATTTCATTAAAATATTAATTTATCTACTTTAATGTTAGGTAGTCCTTAA TCATCATCTCATTGTTCTACAGGGGCTATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAAT TAATGAGCTCAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATT ATGATGAGATTTTTAGGCTGAAAGGTGTTGCAGCAAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACGCCT GCTGAGAGGTGCTTTTTGTGGCTGGGTGGTTTTCGGCCATCTGAACTCCTCAAGGTGATCTTATTCTGACTCTGTTCTTT CTGGATCTCATTGGTTAGAAAATGGGTTTTCCTGATCTGTACTATGTCCTGGTAATATAAAGAGTAAATTCTTAGGTTTT TGGGATTATTTCAAGTTAAATGCAAAATTTTGTGAAAAAGAAGTTTATATAAGCATGCTGGGTTGGCTTGTTGCATATAT GTTTTTAGTTGCTGCTTCACACTGATGAAGAACCTAAATGAATGATGTCAAAGTATTGCATATGACTTAACGTGGAAATT CTCCTTTGATACTGCTGATGGTCCGTGTGGTTTTGACTTTCAATTGGAACTAGTATGGAGTTAGATATACTTGTGACCTC CACACAAATGATAAGACAAGGGTTAGGTGGTAGAAAATAAAATAGTGGGTTGGCTTCTCTATTGATTCTACTCTTCTTTC CCTAGAATCTGTCATTACTTTTTATCCCTCAAGTTCAATGGTCGTGCATAAACTAATTTGAACTTTCATTACCGGTATTC TGCTTGTTATGCTTATCTATAATATTCCTTACGCTCAACAATTGTATCAAGTTTAGTATTTACAACCAGTTTTTGAATAA TGCTTTGTAGTTGTTGGTGTTGCCCTTATATTATATGTATATAATTTTTAAGATATAACTACAACTTCAATATTTTATTC TCGTGCCACTTGCACTCTGCATTTCTTTGAATATGGGCAAATCCCCGTTTTCTGCTGATACTTGGCTAATCTTGTAGTGC TTCAAAATCAATTGAACCCTAAATCTCTGACTTATTTTGAAGCTGTATAAATATTACTGTAAGAATAAGAATCTGCTTCG GTGGTGGGAGCTAGATGTCAAAAGGAAGAATAATAAATAATAATTAGCATGGGTTATATCTAAATCCCTGAGCCACATAA GTCTTAGCTTTTTACTTGATTATTATGCTGATACGTGATTCATATAGTCATGGTTGTCTTGAACTTTTCAAATTCATGTT TCTCATAATTCTGAGAACCTAGTTTTTATTTCCCAGTTCTGGAGTCATTTTATAGTTTCCTTACCTTTAACCTGAGTGCC ACAAATTTGGTTGCAGCTCCTGGTAAATCAGTTGGAACCTCTCACAGAGCAGCAACTGATGGGTATTACCAACTTGCAGC AGTCCTCTCAACAAGGAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTGCGGAGACATTGTCCACT GGAACCCCTGCCTCATCTGGTTCCTCTGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGG GACACTCGACGGGTTTATTCGACAGGTATATTTCTCTTATCATTCTATGCAGATAGTTTGGTGTTTTTGTTGAATAGAAT AGACGTGCCTTTTAATCCAGCCACAGTTTCCTCACATTATTTACAGTTTATAATGATCTTGCTCCATCCTCCCTGAGATT TTCTGGAGTGAAAGTGGTTGAAATTTTGTATTGTTGAAACTTGAAACTGTTGGAACTGGTCTACATTAGAATTTTTATCT GCATGTGCCTTGTAACCAGATTTGACATCTTTAGTAGTGCTGTTTATTGCTATTGTCTGAACTCATGGCAATTTAGCTTC ATTTCATTATTTAGGAAAAAAAATTCCTATCATAATATCTTAATATGGATCCCATTTCTGTTGTGTTCATGGTTATAAGG CTGACAATCTGCGCCAGCAAACTCTCCAGCAAATGCACCGGATACTGACAACTCGGCAATCAGCCCGCGCCCTCCTTGCT ATAACTGACTACTTTTCGCGGCTGCGTGCTCTCAGTTCGCTCTGGCTGGCCCGCCCAAGAGATTAA
CDS sequence (LotjaGi3g1v0316800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAGAGTACAAGGGTTGGTGTTGAAAATGACAAAGGAGCAGAAAGAGGGATGCCAAGCTTCAATTCTGAGCTACC CTTTTCCAACACATGCGATTCAGAGTGGAGAACAGTTGATTCTTTTCATGTTTCTGACTTTGGAGCATTTGATCAATCAT ATCGCTTAGAGGATGCTGTTGATCTAGGTGGAAATTCAGTTTTTGACTCGCTAAAACTAAGTGGCCAAACTACTTTTCCG GGTTCTGTTTACATCGGTAATCTTCATAAGTTACCAACTTCAGTTGATAAAAGCTCACTGACGAACCAAACAGAGCAGTG TAGACTGCAATTACAAAAGGTTCAATCATCAAATCCTGGAACCATATTAGTTGGTGATACAGAAATTCTTGAAGAGCCTA CCATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGTTGACACTGATGACAGGAATCAACGGTTTGATAGGAGT GCCCTTGCTGCTGTGGCTTCTGACTCCAGTGATAGATCAAAGGATAAATCAGATCAGAAGACTCTTCGCAGGCTTGCTCA GAATCGTGAGGCGGCCAGAAAAAGCCGGTTGAGAAAGAAAGCCTATGTCCAACAACTGGAAAGTAGTCGTTTGAAGCTGA CCCAGCTAGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGGGTCTTCATATCAAGCTCAGGCGATCAGGCACATACAATG GGTGGAAATGGGGCTATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTCAG AGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTT TTAGGCTGAAAGGTGTTGCAGCAAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGC TTTTTGTGGCTGGGTGGTTTTCGGCCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTCACAGAGCAGCA ACTGATGGGTATTACCAACTTGCAGCAGTCCTCTCAACAAGGAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAAC AGTCCCTTGCGGAGACATTGTCCACTGGAACCCCTGCCTCATCTGGTTCCTCTGGGAATGTGGCAAATTACATGGGTCAA ATGGCTATGGCCATGGGTAAGCTAGGGACACTCGACGGGTTTATTCGACAGGCTGACAATCTGCGCCAGCAAACTCTCCA GCAAATGCACCGGATACTGACAACTCGGCAATCAGCCCGCGCCCTCCTTGCTATAACTGACTACTTTTCGCGGCTGCGTG CTCTCAGTTCGCTCTGGCTGGCCCGCCCAAGAGATTAA
Protein sequence (LotjaGi3g1v0316800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKSTRVGVENDKGAERGMPSFNSELPFSNTCDSEWRTVDSFHVSDFGAFDQSYRLEDAVDLGGNSVFDSLKLSGQTTFP GSVYIGNLHKLPTSVDKSSLTNQTEQCRLQLQKVQSSNPGTILVGDTEILEEPTMADASPRTDISTDVDTDDRNQRFDRS ALAAVASDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHTM GGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERC FLWLGGFRPSELLKLLVNQLEPLTEQQLMGITNLQQSSQQGEDALSQGMEALQQSLAETLSTGTPASSGSSGNVANYMGQ MAMAMGKLGTLDGFIRQADNLRQQTLQQMHRILTTRQSARALLAITDYFSRLRALSSLWLARPRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 31 | 465 | 435 | 4.9E-225 | – | |
| PANTHER | 31 | 465 | 435 | 4.9E-225 | – | |
| MobiDBLite | 129 | 156 | 28 | - | – | |
| MobiDBLite | 163 | 182 | 20 | - | – | |
| Pfam | 176 | 222 | 47 | 6.9E-7 | ||
| SMART | 176 | 239 | 64 | 1.5E-7 | ||
| ProSiteProfiles | 178 | 222 | 45 | 9.415 | ||
| CDD | 180 | 232 | 53 | 7.77115E-23 | – | |
| Gene3D | 180 | 228 | 49 | 1.1E-9 | – | |
| SUPERFAMILY | 180 | 223 | 44 | 7.5E-7 | – | |
| ProSitePatterns | 183 | 198 | 16 | - | ||
| Coils | 199 | 226 | 28 | - | – | |
| ProSiteProfiles | 245 | 462 | 218 | 34.8 | ||
| Coils | 256 | 276 | 21 | - | – | |
| Pfam | 262 | 337 | 76 | 5.2E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0316800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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