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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0320600 |
| Transcript ID | LotjaGi3g1v0320600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial transcription termination factor family protein, putative; TAIR: AT5G07900.1 Mitochondrial transcription termination factor family protein; Swiss-Prot: sp|F4JVI3|MTEF5_ARATH Transcription termination factor MTERF5, chloroplastic; TrEMBL-Plants: tr|I3SXJ5|I3SXJ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0320600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68049426..68057271) extracted from Lotus japonicus Gifu genome v1.2.
AATTTGTTATATATTAAAAATAAATTAATTTTATAATTATTATAATTATTCATCATAAGTTGAGGAAATTTTTAAAAATA ACAAATAAAACTTATTACTATTTTTATGCTACCTACTAAAATGTAAAGGTTACTTTGAACCTTTGTATTAACATTTTCCT TTGTATTAAATAAATTAAATTAAAATATTAAAAATAAATAAATTTGGGTAAGTTAACAGAAAACGTAGAGAAGAAGATAG AAAAGTTTTATCTGATAGAAAAATGAAAATTGGTAGTTACAGAAGATTCAACAACCTGTATTTATACTACAAAGATGAAG GTGCATACTAACTATCATACTACACACACACTATACTCTTCTCTTCTTTCTGTTATAACAGCCATAACCATTCACTTGTT TAAATGCTGAGCTGGCACTTTGACAGCTGGTTGCTGAGCTGTAAATGAGCTGGATGTGAATGAAGTTTCAGTCTCCTTGT TCTCTTCTTCTATGCCATTCTGGTAGTTTATGAGCCTCCCACAAGCTGGAGCATGATAGATGTCTAACATGCTAAGCTTG CTTAATAAAAAAGTAAAAGGCCTTACTGATAATGCTTTTGTAAAGAAGTCTGCAACTTGAAATTTTGAAGGAATAGATAG CAACTTCATAAGTCCTGCCTCTGACTTTTCCCTGACTATATGACAGTCAATCTCCAAATGTTTAGTCCTCTCATGAAACA CAGGATTGGCTGCAATGTGGAGTGCACTCTGATTATCACAGTAGATGACTGAGGATTTCACTGGCTCTATCTTCAAATCC TTAAGTAAGTAAGTGAGCAACTGCAATTCACAAGTAGCCGATGCTAAGGCTCTATACTCAGCTTCTGAAGAAGACTTGGA GACAGTTTGTTGCTTCTTTGACTTCCAACAAACAAGTGACTCTCCAACAAAGAAACAATATCCAGTCACAGACCTCCTTG TATCCACACAACCACCCCAATCTGCATCACTAAAACCAACTAGCTGAACTGCAGAATTCCTTGGAAAAAATAATCCTTTG CCAGGATTTCCCTTTAAGTACTTAAGAATTCTTTGAGCTGCTGTATAATGTGCCACTGTTGGTCTAGAAAGAAATTGACT AAGTTGCTGAACTGCATATGTAATATCAGGCCTGGTTGTAGTTAAGTAAAGTAACCTCCCCACAAGTCTTCTGTATGAAA AGATATCATCATACAATGGCCCCTCATCTTGAGACAATCTAAGAGATGGATCAAGAGGTGTACTGACTGGCCTACTGCCC AAGACACCAGAATCAGAGAGCAAATCAAGACAATATTTCCTCTGACATAAAGTAATGCCCTTAGCAGAATGTGCTACTTC AAGACCTAAGAAAAATTTCAGCACTCCCAAATCTTTGATCTTGAAAGCATCATCTAGGACTCTTTTAATCTCTGCAAACT CCAATGAGGAATTACCGGCCAATATAATATCATCCACATATATCAACAGAACAGTGAAAGAATCTCCTTGTTTCTTGGTA AATAATGAGTGATCAGAATGAGCCTGTTGGTATCCACAAGAGACCAGGAGACTAGTTAACTTTGCATACAATTGTCTGCT AGCCTGTTTAAGGCCATACAATGACTTGTGTAACTTGCAAACCTTACTAGAATCTGCACAAGTTACTCCTTCTGGAACTT GCATATAAACATCTTCATATAAGTCCCCATGTAAGAAAGCATTGTTGACATCTAATTGATGTAAAAGCCAGCCTTTGATA GAAGCAAGAGCCAAGACCATTCTAACTGTTGTCAGTTTAGCTACTGGGGAAAAAGTGTCAAAATAATCAAGTCCCTCAAC TTGAGTGTAGCCTTTAGCCACTAATCTAGCCTTATATCTCTCAACTGACCCATCAGCTTTCCTTTTAATCTTGTACACCC ATTTATTGCCAATAGGTACTACATTAGGGGGTAAAGATACTAGACTCCATGTCCCATTTGCTTCTAAAGCTGAAATTTCT AACTTCATAGCTTCAATCCAGCATTTATGATGTGAAGCCTCAGCATAAGTTCTTGGCTCAGACTCAAGAGACAATGACAT GGCGTAGTGATGATGAGAAGAGGACAAATTAGAAAAAGACATATAACTAGTAATAGGATACTTACTACCTGAAGATATTG GAGTGGCTGCACAAGAGGAATGACAGATGTAGTCTTTGAGGTGAGGTGGTTGATGTCTAGTTCTTGTGGAGCTTCTTGAC TGTGTAGGTACTGAAGCTAAACCTTCTGCAGAATGGGACTGTGAAACATCTGACTGTGAAACATCTGAAGAGGTACCTTG TTCATGAAGCAAATCATCTTCAAATGGTGAAAAACAATGCTTATCCAAATTCTCTGCATTGCCTTCACTGATAGAATCAG CACCCTGAGAAGTTTCAGAAGACATGACTTCCCAAGGAAGGGCCCCTGAGTGTTGATAAGGAAGAACATGATCATAAAAC ACTACATTTCTGGAAACACTCAAGGACCTACTTATCATGTCCAAAACTACATAGCCTTTAGTCCCACTTTGATAGCCCAT GAAAACACATTTCCTAGCTCTTGGATCCAGCTTATGTCTGTTATTTTGCAAAGTAGATACATAGCATAGAGAACCAAAAA CTTTCAAGTCTGTTAAATCTGGAGGCTCATGATATAAAAGCTCATAAGTGGATTTGTTCTTTAGCACAATAGTAGGAACT CTATTAATTAAGTACACAGCATGCTGAACTGCATAGTTCCAATATTGTTTTGGTAATTTGGACTGAAACAATAATGCCCT TCCAACATTCAAAATGTCTTGATGTTTCCTTTCTACTCTTCCATTTTGTTGAGGACATTCTACACAGGAGGTTTCATGGA CAATTCCTTGAGAAGCATAAAAACTTTGAAGAGTAAATTCAGGTCCATTATCAGTCCTAACAGCTTTAACTACTGCCCCA AATTGTGTTTTAACATGTGCTATGAAATGCTGAACCTTACTTGGGACTTCTGATTTTTGCTTCAACATAATGATCCACAA GTATCTAGTGTTGTCATCTACAACAGTTAAAAAATATCTATGACCATGAACTGTTGTAGTTGAAAAAGGACCCCATATAT CAAAGTGTAGTAATTCAAAAGGATGCACAGCTTTATTAGAACTCAAAGAATAGGACAAACGTTTTTGCCTAGCCATATGG CATACATCACACACTAAGTCACTGGCTATTGCCTTATTTACATGAATATAAGAGTGAGTCTTAGACATAGCAAGTAACTT GTCTCTAGACAAATGTCCTAATCTGAAATGCCAAATTACAGAACTAGGTATGACTGAAGAACTAGCTGTGCTCACTGTGC TGATCTTTGCATCTGCTTGTGCTAACTTCATTGTTGACTGCTCCACTAGACCATCAACCACCAAGTAATAGAGACCTTCC TCTTTTTTAGCCAAACCAATCATCTTCTGGGATTTGATGTCCTGTATCAAGGAGTGTGAGGAGTAGGATAATACAACACA AAACAAATGCTCACATAGCTTAGAAGTAGAAATGATATTGAAGCTAAATTCTGGAACATATAAAACATTCTTCAAGTAGA GCAAGGGTGTAAAAACCACAGTACCAGCTAACTGAGCTCTAACTGTGTTACCATTTGGTAACTGAACACTCATAGGTTTA ATCTTTGAGAAAGAATGGAAAAGATCAAGAGTGGAGCACACATGGACAGTGGCTCCTGAATCCAATATCCATGAATTATA AGCTTTGGATGAAGGAGGATAGTAAGACAAAACAATAGCAGTACCTTTTCCTTTGGAATTAGTACCATCATGAGTCTTAT GCTGAGTATGTAATTGATTGACCTGATGTGATCCTTCATGAATCCTCAACCGATTGATGTGAGAAGTATTAGCAGCTTGT ACTTCTGAAGTTCCTTGAATCAATGTAAGCAATTTCTGGTACTGTTCTACTGTGAAACTTGGAACTGAAACTGGTGAAGG AACTGCAGTGTGAGTACTAGAACCATTCAAAGCTAGAGAAGATTGTGAAGCATCTGAATTCAGTCCTTCCTCATTATAAG CATGATCGCTAGAATAACTGTCTTCTGATTGAAAATTGTTCACTGCTCCAGCATTATTATTTCTAAAAGAAGGAGGAACA CCATAAATCTTGTAACATGAATCAATTGTGTGACCTATTCTGCCACAGTGTGAACAAATTCTATTTCCTCTACCAGATCC TGAATAGTATCCTCTTCCATTGCCAGCAGTATTAGCAGTTGTGGAATTTCTTCCACCATTATATTGATTTCCTTGAGGAT AACCTCTGCCTCTACCATAACCTTGTCTATTATCTACTGCATTCAACATAGACCTTGCATCACCTACATTCTGACTAGAA TTTACAGAAACTGAACCAGATTGTCTTTCTTGTTGTATCACCATAGAAAACACCTCATTCAACGATGGTAAAGGCTTCAT AAGCAAGATTTGTGATCTAACAGTAGCAAATTCCTCATTGAGTCCAGTCAAAAAACGAATTATATAGTCTTGATCCTTAT AGATCTTAGCATTACCCTGGCATGGACATCTAGCATTACATATGCATATAGGTAGTGGTCTAAAACCATCAATCTCCTCC CATAGAGTTTTCAACTCAGTAAAAAAATCAGTCACAGAAGATGATCCTTGCTTCAAATTTGAGATCTCACTTTGCAACTC AGAAATTCGAATTAAATCTACTTGTGAAAAACGTTCTCTCAATTCATTCCAAATATCAATCACATTTTCAATGTAAACTA GGTTTTGTGCAATTGAAGCAGAAACAGAATTCATAATCCAAGTATGAATAAGATTGTTGCACCTTTCCCACGCAAAATAG AGTGGATGATCCGTTTCCGGAACTGGAATGCTTCCATCGACGAATCGGAATTTGTTCTTCGCGCTCAGAGCTCGCCGCAT CGAACGTGTCCATGTCTGAAAATTCGCACTCGTCAGCTTCGGTGTAACAGAGACTGTGGAAGGTCCATCGCCTGGATGAA CGAAATATGGACTCAGAGGATCAAGAGAAGGATCCAGAACGCCATTGTTGGATCCAGAAGCTTCAGATTGATTGTTGTTC TTCTTTGCCATTGATCAGAGTAAACGCAGCAGAGCTCTACAAAGAGAGCTCTGATACCATAACAGAAAACGTAGAGAAGA AGATAGAAAAGTTTTATCTGATAGAAAAATGAAAATTGGTAGTTACAGAAGGTTCAACAACCTGTATTTATACTACAAAG ATGAAGGTGCATACTAACTATCATACTACACACACACTATACTCTTCTCTTCTTTCTGTTATAACAGCCATAACCATTCA CTTGTTTAAATGCTGAGCTGGCACTTTGACAGCTGGTTGCTGAGCTGTAAATGAGCTGGATGTGAATGAAATTTCAGTCT CCTTGTTCTCTTCTTCTATGCCATTCTGGTAGTTTATGATAAGTTATTAGCTATTGAACTACCTACTAAAATGCATAACT CAATTGAAATTTTGTTATAAATAGACCACAAAACAAAAAAAAAATTATTTGTATTATATACATTAAACTAAACTAAAAAC TGATCAATAAATTTTTTAGATCAATTAGTTATTCAACTACCAACTAATTTTCATGTTTTTTTTATAAGGTAAAGAAAAAA AGAATTATTTATCTCTTTTGAATGACAATTATGTTTCAGCTGAGGTAACAATTATGGTCTATCAAGTGCCTCTGTTTTCG GTGTTCGTTTAGCTGCTGTGTAAACCAAACGCGGTGGTTACTGGAAACTGCGGCGGTAGTGGCACGAAAATGTACAATCT CATCATGTTCCAGTTTCGTTTTCACCGGCGAAGAGCCCTTCTTCTTCAACTGAAACCCTTCTTCCCCTACCCATTATCAA TACCTCACAACTTCTCAACCACTTGTGATTCTTCCGATAAACAATCCTTCACCCTTTCATATCTCACGAACACTTGTGGC TTTTATCCCCAAGCTGCTCTCAAAGCAGCCAAGCGAGTTCGTTTCAACGACACAAACAAGCCCGACTCGGTTATCGCCTT CTTCACAAACCACGGTTTCTCCATCTCCCAGACACAGAACATCATCGGCAAGGTACCAGAGCTTCTTACATGCAACCCCA CCAAAAGGGTTTTGCCCAAGTTTCAATTTTTAGCCTCCAAAGGTTTTGACATAGTTACCACTGTGACTAGGGCCCCATAT TTCCTGCTTAAAAGCCTTGAGAATCACATTATACCTGCATTTGAATTTGTCAGGAGATTCTCTCCATCTGATGAAAAAGC ATTAGCTTGTGCACTTTTTGGTTCCACTTCCTATACTATTGCTCTCATGAAATCAAAAGTACAATTGTTGCTTGATATGG GAGTGCCACCCTCAAACATATACATTTTGCTTAGAACTAGGCCCTCTATGCTCGGATGTGCTAACATGAAGGAGGCCGTG GAGGAAGTCAAGGGATTGGGATTTCATCCCTCCAAAACGCATTTTGTTGCAGCATTACAGGCCAAAAGTTCTATACCCAA ATCACTTTGGGATGCCAAACTCGATGCCTTTAAGACATGGGGCTGGTCTGAAGATGTTGTTCTGGATGCATTTAGGAGGG ATCCCCACATTATGCTAAACTCAATCAAAAAAGTTAATGCAGTGATGAATTTTTGGGTCGGCCGTCTTGGTTGGGACCCT TCAGTGCTTCTAGCAGCGCCATGCCTTTTTGGATATAGTTTGGAGAAAAGGCTTATGCCAAGGGCTTTAGTTGTCCAGTA TCTTCTCTCCAGAGGTTTGATGAAGAAGAATGCTAGCTTAAGTTCACCATTTATGTATACAGATAAGTTGTTCCTGCAAA AATTTGTGGAATGTTTTGAGGAGGAGGAAACATCTAAGCTACTAAGTCTATATCGTGGAGGATGCTAGCATCTGGTACTT TGTTAACTCATGAATACTGATTTCTGTGTAAGCCAGCATAGCATTGATACTAGAATACTGGAAATGTCAGGGGAGAAATC ATCTTCAATTTTCATTTTGGATTTTGATTGTACAACAGTCAGTTTTCATCAATATCTTAGCTGTTATATGAGTTTGTGAT TATAGGACTAAGTCCTGGATCTTGCCTTCCCTTGCTACTGATTTGTGGATATTTGTGACTATTGCATGAAATGATTCTGT AGAATTGACCATGTCAATTTGGTATAAATTTCTTTCATTTTTATGTCTCTGTAATCTGGTTCATATTTTTCAATGCTCCA ATCATAGTAATTTTTGAAATGACCATTAATCTGATTGTCCGAAGTAATTAATATGATACTTGTTGAAATGACCATTAATC TGATTGTCTGCAGAAGATTTCCTCATAAAGAAAGTTGTGTATAATGTTTATTGACTATATATGATTTGGTAACTCAGTTT CAAATGTTTATAAATTCATGGTAAATGTTTATAAATTCATGGCACTAGCTGTAGTTTCAGCAGGTAATTTAGAGTGTAAC AAACTGTGAAGTTGTAAACAGTGATCTGAACTCTGGACAACACCACAGAATGAGTGAGCCTTAGGATCTGTCATTGGGTG AGAGTATGCCTTTACTGTCATAGTGTCATTGTTGTTGATTGAATCATATGTTAATTTCCTTCGTTATGGTTAGTTCAATT TTATTATGGTGAGAAATTCTTTGAGCCAATATTATTAGGCAGATTAAAAGTTCCCTCTGACTGATTGTTGTAATGAAGGA GGTAAAACATTATGATTTTGCAGTGTTCTTTTTACAAAGAGATTATATGGGCTGAGAGAACGGGTTTACATTTCTACATA TTTTGC
CDS sequence (LotjaGi3g1v0320600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAATCTCATCATGTTCCAGTTTCGTTTTCACCGGCGAAGAGCCCTTCTTCTTCAACTGAAACCCTTCTTCCCCTA CCCATTATCAATACCTCACAACTTCTCAACCACTTGTGATTCTTCCGATAAACAATCCTTCACCCTTTCATATCTCACGA ACACTTGTGGCTTTTATCCCCAAGCTGCTCTCAAAGCAGCCAAGCGAGTTCGTTTCAACGACACAAACAAGCCCGACTCG GTTATCGCCTTCTTCACAAACCACGGTTTCTCCATCTCCCAGACACAGAACATCATCGGCAAGGTACCAGAGCTTCTTAC ATGCAACCCCACCAAAAGGGTTTTGCCCAAGTTTCAATTTTTAGCCTCCAAAGGTTTTGACATAGTTACCACTGTGACTA GGGCCCCATATTTCCTGCTTAAAAGCCTTGAGAATCACATTATACCTGCATTTGAATTTGTCAGGAGATTCTCTCCATCT GATGAAAAAGCATTAGCTTGTGCACTTTTTGGTTCCACTTCCTATACTATTGCTCTCATGAAATCAAAAGTACAATTGTT GCTTGATATGGGAGTGCCACCCTCAAACATATACATTTTGCTTAGAACTAGGCCCTCTATGCTCGGATGTGCTAACATGA AGGAGGCCGTGGAGGAAGTCAAGGGATTGGGATTTCATCCCTCCAAAACGCATTTTGTTGCAGCATTACAGGCCAAAAGT TCTATACCCAAATCACTTTGGGATGCCAAACTCGATGCCTTTAAGACATGGGGCTGGTCTGAAGATGTTGTTCTGGATGC ATTTAGGAGGGATCCCCACATTATGCTAAACTCAATCAAAAAAGTTAATGCAGTGATGAATTTTTGGGTCGGCCGTCTTG GTTGGGACCCTTCAGTGCTTCTAGCAGCGCCATGCCTTTTTGGATATAGTTTGGAGAAAAGGCTTATGCCAAGGGCTTTA GTTGTCCAGTATCTTCTCTCCAGAGGTTTGATGAAGAAGAATGCTAGCTTAAGTTCACCATTTATGTATACAGATAAGTT GTTCCTGCAAAAATTTGTGGAATGTTTTGAGGAGGAGGAAACATCTAAGCTACTAAGTCTATATCGTGGAGGATGCTAG
Protein sequence (LotjaGi3g1v0320600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNLIMFQFRFHRRRALLLQLKPFFPYPLSIPHNFSTTCDSSDKQSFTLSYLTNTCGFYPQAALKAAKRVRFNDTNKPDS VIAFFTNHGFSISQTQNIIGKVPELLTCNPTKRVLPKFQFLASKGFDIVTTVTRAPYFLLKSLENHIIPAFEFVRRFSPS DEKALACALFGSTSYTIALMKSKVQLLLDMGVPPSNIYILLRTRPSMLGCANMKEAVEEVKGLGFHPSKTHFVAALQAKS SIPKSLWDAKLDAFKTWGWSEDVVLDAFRRDPHIMLNSIKKVNAVMNFWVGRLGWDPSVLLAAPCLFGYSLEKRLMPRAL VVQYLLSRGLMKKNASLSSPFMYTDKLFLQKFVECFEEEETSKLLSLYRGGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 10 | 370 | 361 | 1.4E-144 | – | |
| PANTHER | 10 | 370 | 361 | 1.4E-144 | – | |
| Phobius | 16 | 21 | 6 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 372 | 346 | - | – | |
| Gene3D | 61 | 170 | 110 | 6.6E-9 | ||
| Pfam | 83 | 226 | 144 | 1.5E-11 | ||
| SMART | 96 | 127 | 32 | 0.0034 | ||
| SMART | 129 | 160 | 32 | 200.0 | ||
| Gene3D | 171 | 360 | 190 | 8.4E-15 | ||
| Pfam | 250 | 348 | 99 | 6.6E-13 | ||
| SMART | 265 | 296 | 32 | 52.0 | ||
| SMART | 297 | 331 | 35 | 0.038 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded DNA binding | Interacting selectively and non-covalently with double-stranded DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0320600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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