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LotjaGi3g1v0321400.1

Overview

Field Value
Gene ID LotjaGi3g1v0321400
Transcript ID LotjaGi3g1v0321400.1
Lotus japonicus genome version Gifu v1.2
Description Peptidyl-prolyl cis-trans isomerase; TAIR: AT3G15520.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|P82869|CYP37_ARATH Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic; TrEMBL-Plants: tr|A0A072U108|A0A072U108_MEDTR Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi3g1v0321400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:68256083..68260862) extracted from Lotus japonicus Gifu genome v1.2.

TTTTCAGATGAAGCAAAAAATAAAAATAGGATGCTGTTTACTCTATATAATAATTCTTTAGGATTTTTAACATCAATAAG GTCCCATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATCTCGGTGGGACCTTTCTTCAGT TTTTGCTTCTCATTCTTTTCCTTTATCTAATCCGAGGACACAAATGTCATTACACGTCCAACCCAGAAGAGAGAACGCGT GTTCGTTCTTCCACTTCCACACACACACACAACAGCAACAGCACCACCGCAACGGATTAGGCGCGAGCAAGCACATCAAC AATGGCGCTCCCTCTCTCTTCCTCCTTCAACCTCCCCTTCACTTCTCACCGCTCTCCATCTCTCTTCTCCACCTCCTCCT ACTTCCACCGCGCCTCACCACCACCACCACCGTCCCCTTCTCGAATCTTCTGCTTCTCAAACAAGCTTCACCACCTCACC AAGGTCACACTCACGCGCATTTACCTCAATACAGTCGCATTTAACTTCACATTCTCACTTCAACCAATTTTGCAGGAACT GTTATCTGACACGTCAGCGAGTGTGGTTGTTGAGAGGATAACGAACCAGTTGATGAAGAGTGTCATGATTCCTGTCATAA TTGCCTCCACAATTCTTCTTCCTCCGTTGATCGATTCGTCGCCTCCGGTTGCGAAGGCGGTTCTGTATTCGCCGGATACA AAGGTTCCAAGAACAGGTGAAGTTGCTCTCAGGAAAGCCATTCCTGCAAATGCTAGCATGAAGGCTATACAGGTTCATTA TGTAATTGTAATGCAGCTGTGTAGTTAGATGTAACTGGTTAACTACAAATTGTGGACACTGAGTGTTGCATTATAGAAAC TGTGTTAAACTATAGCTGTTTCAGGACTCTCTTGAGGATATTTCGTACTTGTTGAGGATTCCGCAAAGAAAACCTTACGG GACAATGGAGGGGAATGTCAAGAAAGTTTTGAAGGTATTCAAAATCAAACTCTTATTTTGTTTTATTCATCTGAGAAATA AAATCACTAATTGAAGTGTTTTCCGCTCTAGAACTAGAAGTTTGCAGATATGTCGTCGAATGAATGACTAGTAGTTCATT TTCTTTGGCTTTGATATACTCCGCATATGCGCAGGCCTGGGGATTTTCTAGTTCCTATATTACATCTATAAAACCTTGGT GTCTTGTTTTTTGTTGATAGAAAGATCAGGAGATTGTTGTATATAGCTTAAGTAGTTTAGCACTATGCGATTTGCATGTG GAGTTTGTAAAATTAGTTGCACCTAATTAGAATATGTTCCTTTGGCTTTCGTATTCTATTTGGTCTGACCATAACCCTCT TGTTGTATCATAGTCATATGAGGACTTAAATTTTTGTAATTATGTTTCATTGCTTCAGATAGCTGTGGATGAAAAGGATG CTATATTGGCAAGTATACCAGCAGAACTGAAGGAAAAAGGCTCTTTGGTACATGAATCTCTGATAGGTGGAAAGGTATTT TAGAAAGATACACCTTCCGCAACATGTGAGTGTTTTGAGTATACCATGCGCTTGTTCCTAAAAGGTTGTTGGATGGATGG CAGAGTCAGATGAAGAAATTTGAATGTGAAATTTGGGACTCATTTTCAGTTCATCATGTTGTGTTTTGTAGGACAAAATC TCCTACAATGTTATTTAATTAGCACAATAGGTGAAATTGATAGTTACCAGAATGACGTTGATATTTTGCAGGGGGGGTTA CAATCTCTCCTTCAATCAATAAAGGAACAAGATGCGGATAGAGTTTCTGTGAACCTTCAATCTACACTGGATACTGTAGC AGAGTTAGAGTTATTACAGGTACTTCAAACCAGATGATATGATGTTGTTATCTTGAAATCAATAGTGCTTATTTTTCATT TTCCTATAAAATGACTGAATTTATGCAACAACACTATTACAACCATTTCCAGAATTTGAACTTGATATTGTTGCAACAGG CACCGGGGATATCTTTTCTGTTGCCGGAGCAATACTTGCAATATCCACGGTTAGTGACTCCTATCACAAGTCACGCCGCC TTGATGTAGTACATAGATCTGTCTAATGGATACTTCAGACATACCTTTTACTTTAAATCTTGAAACATGCACGAGACTGA CATAAAAATGATCATGCAGTTAATCGTTCATAGTGAAATTCTTTGGAAAAAATAAATAATCTAAACATTGGGAAAAGTCA ATAATTTCCCAACTTCTTGTAGGCTTTCAGGGAGAGGAACTGTCGAGTTCATCATTGAGAAAGGAGATGATTCAACATTT TCTCGAGTTGGTGGAGAAGAGAGAAAAATTGGCACACTTCAGGTAAAATTCAGTCCATATGTTTCCCTTTATGATCAGCC ATTGGTTGTTCATTTGGTGGGCCTCAGGTCGCCTAAGTCCTTAAAGGATTAAGAAAAAGGTCCATTTCAAAGAATAAAAC ATACTGAAATGCACACTTGGGTCAAATGGGGCATGGATAAACAGTTGGTAGATCGTATATTAAAATTAACTGGTAGTTAA CCTTTTTTTTCAGGTTGTTTTAGATGGATACTCAGCTCCATTAACGGCTGGGAATTTTGCAAAACTGGTAAGGTAGTGGA ACAGTACTTCAGCCTAATGAATTTTGCGTATGTCTATTCCTTGCTAATAGCCTTATTGTAAACCACTTTTGATTTTCATT ACTTCTGATGGTTCATCCACACTCTTAAGATTTTCCAAATTCTCAGTGAAGTAAATAAGTATTTTTCAAGTTTTACATGA TGATTTATGATCTTTGGCTAATATCTCAATCATCACTAACTGTTTCTCTAGAACTTTTCATATATCATTGTGAATAGTGC ATCACTATTTTTTTTATTTTTTATTTTTTTGTGAAAAATACTTATTTGGCCCTTTGGGGTCATAGTTTACATACACAAGA AAAAGTGGCTTCCACATACTTGTTGCTTGTTTGGATAAGCTTATCTTTCATCAGAATCGATTCTGAAACCTAAAAGCTAT TGACAGAAGTTTCTCCCCATAATTGATTATGGCTTCAGTATCTATTGTAGAAGGGTTTCCAAACATGCACTTAAAACTTG TGTTATGGTTCTAATACACACAGCACTTGATCAACAGTTCTGTCTAAGGAGAATATATTAACTGGAATACAGTCATACAC GGATTATCAATTTGAAAAATATAATATCGTAACAAAGACAGAGTTGATTACAGAGAGGAAGAGTCGACTTAAAAATAAAC ATGGAAACTAGGGCAATAGACAGCTTTCAGTGAGGGTTTAAAGTGCTGCTGAAACTACTATAAGGGAACAGAACAATGAG GAAGTAGGGGTTTCATCTGTTGAAGAATGCTAATGACACTGCAATTATCATTGACTGAACTTGTGATGTGTTGGAAATTG GAATTTTTCTGTTCTTAATTTGTTTAATGTGCATATGAAGATTTAAACTGTGATATTCTTCCTGTTTTAAGCAATGGTGT TTTAAACATGTGGATTATTTGATTGTACCATCTAATGGAAACGTCGCTCACACAATCACATAACTTTCAGGTGATGGATG GAGCATATAATGGTATAAAGCTTAGCAGTATCAATCAAGCTATTCTCTCAGAAAATGGACAGGATAAGAACATTGGTTAC AGTGTTCCCTTGGAAATAAAGCCCACTGGACAATTTGAGCCCCTTTATAAAACAACATTAAGTGTGCAGGTATGTTTTTG TTTTATTCTATCACAAATTATGCTGCGGACTTAATTGACATTTGGAATACTGTTCTCATTTGTTTTCTCATGTGTGTATT GTGGAAGGATGGAGAACTTCCTGTCCTTCCTCTGTCTGTTTATGGGGCAGTTGCCATGGCTCATAACGAAGCCTCTGAGG AGTATTCATCACCTTATCAGTTTTTCATCTATCTCTATGATAAACGAAATGTAAGTGCAATTTACAGATGTCCCTGTTAC TTTACTTATTCGCTTATATCAAGAATAGTGAAATGTGGAAGCAGAATTTTCATGTTTAGATGAGATATCTTTTCAGCCTA GGTAGCTTATTATTCTTTTCCTTTTGTAGTCTGGCTTGGGAGGGATATCATTTGATGAAGGCCAATTTTCAGTTTTTGGG TAAGCCTCGTTAGTATTAGTATATCTTGCTAACTAATCGACTTTAGAGTTTAATTTTTCCTCTTTTGTTTTCTATGCTAT TAAAATGTGCAGATACATAACCACTGGGAGAGACATTCTCCCCCAGATAAAAACCGGTGATATTATTCGTTCTGCGAAGC TTATTGAAGGCCAAGACCGCCTTGTCTTGCCGAAGGACAGTTGAGTGAGTTGGTCTCATGGTCTTGCGGTGTTGCCAAGA AGGGAAAAATCTTTCATTCTTTGTAATATATAAATACTATGCCGATGGTATCAACCTGATTTTCTAGGTGCAGGTTGTGT TGTACTTTGTAAATTACCTGATAATATAGGAATAGATTGAAATTTCTACTTACCAAAAAATCCAATTGCCCAGCAAGAGA ATCCTGCCAGAACCTTTTGGGGAGAAATTGGCGCCATTTTCTTTGCATTTACAGCTGGGGATTATAGACAAGCACTTCAT TCTTTACTCTGCACTATATTATGAATTTAACCTAGGTTCTCACTGTTCTGGGAATGAACATTGAGGATAGGGATAGTACC TAGAGAGTGGAAAATTGTGCTAAAGAGAATGAGAATGAGAGAGAGAATGCTGAATTTCAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0321400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGCTCCCTCTCTCTTCCTCCTTCAACCTCCCCTTCACTTCTCACCGCTCTCCATCTCTCTTCTCCACCTCCTCCTA CTTCCACCGCGCCTCACCACCACCACCACCGTCCCCTTCTCGAATCTTCTGCTTCTCAAACAAGCTTCACCACCTCACCA AGGAACTGTTATCTGACACGTCAGCGAGTGTGGTTGTTGAGAGGATAACGAACCAGTTGATGAAGAGTGTCATGATTCCT GTCATAATTGCCTCCACAATTCTTCTTCCTCCGTTGATCGATTCGTCGCCTCCGGTTGCGAAGGCGGTTCTGTATTCGCC GGATACAAAGGTTCCAAGAACAGGTGAAGTTGCTCTCAGGAAAGCCATTCCTGCAAATGCTAGCATGAAGGCTATACAGG ACTCTCTTGAGGATATTTCGTACTTGTTGAGGATTCCGCAAAGAAAACCTTACGGGACAATGGAGGGGAATGTCAAGAAA GTTTTGAAGATAGCTGTGGATGAAAAGGATGCTATATTGGCAAGTATACCAGCAGAACTGAAGGAAAAAGGCTCTTTGGT ACATGAATCTCTGATAGGTGGAAAGGGGGGGTTACAATCTCTCCTTCAATCAATAAAGGAACAAGATGCGGATAGAGTTT CTGTGAACCTTCAATCTACACTGGATACTGTAGCAGAGTTAGAGTTATTACAGGCACCGGGGATATCTTTTCTGTTGCCG GAGCAATACTTGCAATATCCACGGCTTTCAGGGAGAGGAACTGTCGAGTTCATCATTGAGAAAGGAGATGATTCAACATT TTCTCGAGTTGGTGGAGAAGAGAGAAAAATTGGCACACTTCAGGTTGTTTTAGATGGATACTCAGCTCCATTAACGGCTG GGAATTTTGCAAAACTGGTGATGGATGGAGCATATAATGGTATAAAGCTTAGCAGTATCAATCAAGCTATTCTCTCAGAA AATGGACAGGATAAGAACATTGGTTACAGTGTTCCCTTGGAAATAAAGCCCACTGGACAATTTGAGCCCCTTTATAAAAC AACATTAAGTGTGCAGGATGGAGAACTTCCTGTCCTTCCTCTGTCTGTTTATGGGGCAGTTGCCATGGCTCATAACGAAG CCTCTGAGGAGTATTCATCACCTTATCAGTTTTTCATCTATCTCTATGATAAACGAAATTCTGGCTTGGGAGGGATATCA TTTGATGAAGGCCAATTTTCAGTTTTTGGATACATAACCACTGGGAGAGACATTCTCCCCCAGATAAAAACCGGTGATAT TATTCGTTCTGCGAAGCTTATTGAAGGCCAAGACCGCCTTGTCTTGCCGAAGGACAGTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0321400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALPLSSSFNLPFTSHRSPSLFSTSSYFHRASPPPPPSPSRIFCFSNKLHHLTKELLSDTSASVVVERITNQLMKSVMIP VIIASTILLPPLIDSSPPVAKAVLYSPDTKVPRTGEVALRKAIPANASMKAIQDSLEDISYLLRIPQRKPYGTMEGNVKK VLKIAVDEKDAILASIPAELKEKGSLVHESLIGGKGGLQSLLQSIKEQDADRVSVNLQSTLDTVAELELLQAPGISFLLP EQYLQYPRLSGRGTVEFIIEKGDDSTFSRVGGEERKIGTLQVVLDGYSAPLTAGNFAKLVMDGAYNGIKLSSINQAILSE NGQDKNIGYSVPLEIKPTGQFEPLYKTTLSVQDGELPVLPLSVYGAVAMAHNEASEEYSSPYQFFIYLYDKRNSGLGGIS FDEGQFSVFGYITTGRDILPQIKTGDIIRSAKLIEGQDRLVLPKDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47318
59 445 387 6.3E-211 –
Gene3D
G3DSA:2.40.100.10
114 441 328 8.8E-100
IPR029000
Gene3D
G3DSA:1.20.120.290
125 233 109 8.8E-100
IPR023222
ProSiteProfiles
PS50072
267 423 157 12.08
IPR002130
SUPERFAMILY
SSF50891
276 430 155 5.11E-20
IPR029000
Pfam
PF00160
277 426 150 2.1E-14
IPR002130

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000413
Biological process Protein peptidyl-prolyl isomerization The modification of a protein by cis-trans isomerization of a proline residue.
Subterm of
GO:0003755
Molecular function Peptidyl-prolyl cis-trans isomerase activity Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0321400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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