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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0322600 |
| Transcript ID | LotjaGi3g1v0322600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT5G15340.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P94479|YNBB_BACSU Uncharacterized protein YnbB; TrEMBL-Plants: tr|A0A1J7HI74|A0A1J7HI74_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0322600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68774626..68779826) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTACCACTTGCACCACACAAGTATAGCAAAAGTAATTTTTTCGAATTTATGGTTAGAGTTAAGATAATTTAAGGCAA ATTTGAGTCTGAAAAATCCATCAAAAGCTGAAACACAAGCGAAGATAAGGAGGGAAGAGCAGCCAGCAAGAATGCACGCC ATCTCTGCATATCCTGCGCTTCCTATTCGAGCTTCCATTCCAATGGCTACAGTTCGCTGTGCCTCTCGCCTCTCCATTCC TGTCAACGTTAACACCATTCGTCCTCGCTTAGCCAGTCCCTTCGTACCAGAGGTACCACTCTTACTGTTGGAAACCCACA ACCTTATTTTATCACAAACCCATTTGGTTACTTTAAATGCAGTGAAAATTGTAAACGAATGATACAAATTTGATCTTTAT GAAACCCAGAAGCGTATTTTGTCACAGCATCATTTGGTTGCTTGGGAAGCATTAGATATTGTAAACAGAGGAAAAAGTTA TTTTCTTTTTGATGAACTAGGAAATGGGATGTTTGTTTGTTTTTGTCCACTCACTGTAACTGTGAAATCTGAAATATGGG AATTGCTGTCTGGTATGTCTGCATGGTACTTGTGAAAATGTCTGAAAGAGAGAGAATGTCAAGTTAGTGTATGTTTTTGG GTTGAATAACCTTTTATTTCATTTTCATATTTTGTTTTTGGTGTTTACTTAATGTGTTAAAGAAGTAAAAGAACTAAATG TTAAATGGTTCTACTGGGTTGTGAACTTGTAATCATCAGTCATCACAGGTTTGTAAGAATGTAAAAGAATCTTCCATTTG AATGTGCAAATCTGCTTGGACCATAAGGAATGCAGCTTTGAATTTTAAATTTGATTTTCTGAAAAGGGTATATAGCATTT GATTTGGTTTTGTTTTAATTCCTGAAAATATTTCTTTCTCATTCTGATATTCTTGGTTTTTCTTCTGGTTTGCTATGAGC ATTGAGCTTGTTGGAGTGTTATCCAGCTTTACTTCTAATTTATGTTGATTCCGATGTTGAGCGTGCCTGTTTTAAGTGGT GAGAAGGCTCGTAGATTGAGATAGGACAGTAATGGTTTCCTTTTCTTGCAGTGCAGGTTGTGGAAGCAGTGGATGCATTG CATTCAGAGTTCAGGGCTGTGGATAATTTGGTTGCGTGCAATACCACTCGTGTATTGAAAGCTTTTCAGAATTCTCGAGT TGGATCTCATGTAAGCATGCCCCTTGATTTAGATAACTGGTTTGTATTATGGTATTCTTGGATTAAATAATCATTTGATT TGATGCTCATGGGTGTATGGAGAATAAATGTTCACTGTTGTTATTGGAATTGGTAGAGATGTTTTATAGGCCATTGGGCT GATTTTCTATGTGACTGATTTTGTTAACATTTTGAGCAAAATCATAAGAAAAAAAGGAAACCCAACAACTTAAGATTTTA CTAGTGAGAATCTGGAGCTGCCAATTGAAACATGAACAAAAAGTATGCTTTTACGTCTAACTTTAGGATACTTGACAAAC TAGAATTGATGCCTTTTCAGGTAGAGTTGACAGACAGTCATGATTATTGAATTGTAATCCCTGTGATGCAGAAAACTTGA ACTTCTGTACTTTGATTTGTGACAGAGAAATAGGAAATGAAACACTCCCCTTCCTGATCAGAAAAAGATCAAAAGATTAT TTGCAAATTCAGCATCTCATCAGTTGGTTGTTTTTACGAACTCTGCCTTAAATTTGATGCCTGTTTTGTCAGGATGTCTT TGATTAGGATGTTGATTATTATTTTTTTACAGCTCTTGATATTTGATACATACAAGCAGTCAAACTTTTGTTACAATTTC TGTGGTAATAGTTTTCTGTATTTTGGCACTCTAATTGGTTGTTAACATGCATATTGCTATCAGCACTTTGCTGGTTGCAC TGGTTATGGTCATGATGAAGCTGGGGGACGTGAGGCACTTGACCAAGCCTTTGCCGAAATTTTTGGAGCTGAGTCAGCTA TTGTTCGTTCACAGGTTCTTAGTTTTCCCTGTGTTCTTTTTTAATAGATCACTTCTTAGTTCTTACTGAAGATGCCCTTA TAGAAGCCATAATATTCTCATCTATCAACAGTTCTTCTCAGGTACTCATGCTATCACATGTGCTTTATTTGCATTCCTGA GGCCTGGGGATGAGGTAGCCATTTCCTTTTGACATTCCATGTTTTTCCTTATTTGCTTGCAGTTTACCTCTGTAGTTATA TAATATTATCTTGTTGTGTTTTAACTGGAATAAGGTTTAGACTAATATAGCTGTCAGCTTTTGGCAGTTGCTGGTGCTCC CTATGACACTTTAGAGGAAGTAATTGGGAAAAGGGACTCTGGTGGACTGGGTTCCATCCAAGATTTTGGGGTGGAGTACC GAGAAGTTCCAGTATGCTACTAATCAGTAATTTCTGTTTGTTCTGGCTGTAATTTATTAGTCTTCTTTCTGACTCTTCTC TGACACTTCTCCATCAGCTTGCGGAGGATGGTGGACTCGACTGGAATGCGCTGATGGTTTCTATCAAACCCAAAACAAAA TGTGCTCTAATACAGAGATCGTGTGGTTATTCATGGCGTCGAAGTTTGAGTGTTAATGAGATTGGGAGGGCAATAGAAAT AATCAAAGTAAGGTTCTTAATGTTGCTCTTTCTTTTGAATTGTAGCATCATGATTTTCTGTTAGCAATAATAGAAACTTA CATATTTTGTAATAATTGTTTAATTTTGTATATCTAAAATGCCATAGTAATAGAAACTATATTTGCTTTACTGCATGCTC TATAATATTGAGTCAATTTTATCCTAGCTTCTATGTTTTTCGTTAATTAAACCAGTGATAATTTTCCTACAGTACTGTTG CATTGGAATAACATTTTTCCCAAATAAAATATTGGGAACTTCTGAAGCACACCTGCCTTGTTCCTGTTTTGACCTAAAAA CATATGGAAAAAATAGTGGCTTATTAAAGAAGTATACTTTTAAGGTGTTTGTTTTAGAATTTTACACCCAAAAGATAATC CTTCAGCTGAAGAAATCTGTTTGTAACTCTCCTATAATTTTTCTGATCATGGAATTTTCATGTGATCTCAGTTTTTGATG TAGAGATTGCTGAGGAAATGAGACAGTAGATGTTGTTTTCATGATGATGTTAAATGACATTATCTAATTAGTTGATTAAA AAGTGCAATTTTGCTCTAACTTTTACCCATGAAATCTTCATTCTATAGCAGTCTTTCCTCATTGTGTATGCAGAAACTGT ATTCTCAGTTTAGGTGAAACACAAGACTAGAGTGAAATTACAAGTTTTATTGTCTCATTGTGTAAGCTGATTGTCTGTGC TTTTCCACGGTAAGTAACCTTTTTCTGATGGTATTTTCACTCTATGACATGCTCCAAATATACATGTGCAGATGCAAAAT CCTGGCTGTTTAGTCATGGTTGACAATTGCTATGGTGAGTTTGTGGAAAGCATTGAACCTCCCATGGTGGTACGTGATAA TATGTCATACTTTGTGTTGCTTTATTCCAAGGATGAGTAGTATAACCTTGTTACATTGGTGGGCAGGGTGCAGATTTGAT CGCAGGCAGTCTGATTAAGAATCCTGGTGGAACGATTGCACCATGTGGTGGATATGTTGCTGGGAGAAAAAAATGGGTTG AAGCAGCTGCAGCCCGTCTTTCTGCGCCCGGGCTCGGTATGGATTGTGGTTCAGTCCCTGGTGATATCATGCGAGCCTTT TTCCAAGGATTATTTCTTTCACCTCAAATGGTTGGTGAAGCAATCAAGGTACTGATTCTTCATTTTAATTATAGAGATAT TGTGTTTTTTGTACTCATATCTGATAGTGACTCAGACTTTCTGTATTCTAAGGGTTCCTTTCTGATTGCTGAAGTTTTGG CATCTAAAGGCTATAAAGTGCAGCCACTCCCACGTGTCCCCCGTTATGATACTGTTCAGGTTTTCTAACTGAATCTTGTG TTGTACTTTCTAAATGAAATATTGGTGACTGATTTTTGTTTTAACGTTGAGTTACCGGCGTTACTAGCAAGAATATATTA CTGGTAGAAAAGCTGCTTTTGATCTAAACAAAAGCTAGTCAGTTAGGAATCTCTTTTCAATTTATGAAATGATAGTTACT CAAATGAAAAGTAAAATCAAATTTCAATGCCAATAGGCCGTGCAGCTTGGAAGCCGTGAGCGTCTCCTTGCTTTCTGTGA GGCTGTTCAGAGAAGCTCTCCGGTTGGTTCATATACCAAACCAATAGCGGGTACTACTCCTGGATATGCATCTGAGGTCT GTTCAGATTTCTCTCAATGTAATGTCATGTCTTGCACCTTTTGGGATGTTTATCACTTTTCTTTCCTGGCAAAAATTAAT AACTGTTTGATATCAATCTCAGGTGATCTTTGCTGATGGAACCTTTATTGATGGGAGTACTAGTGAGCTTTCATGTGATG GACCTCTTAGAGAGCCATTTGCTGTATTTTGCCAGGTACTTGTATTTTGTATCATGCTATACTACCTATGATGTGCTATT TTCTTGTTATCTTGATTTTATTTTCCAAATGTAGGGTGGCACTCATTGGACTCAATGGGGCTTAGTTCTGGGAGAAGTTT TGAAATCTATATGATGGAGTGTAAATATCAGTCACTTAGTTCATACAAAATATTGTTATGTGGCCTTAAGAGGACAATGG ACATGGTTCAGGTTGGTGCAAATGCAAAGAATAAACAAGTATTACTTGCACATAACAAGATCACTGGGTTCTATTCTAGA TTGTGCAGGTTTTGATATGTATGTAGTTGTCAACCTCATTGAAAGAGCTTCTTTTAGAAGTCTTCTTCTCTGGTAGATTA ATAGCTTGTAAAGGGTTGAACACAATCTTTTTTTTTTTTTGAAAGAAGGTTGAACACAATCTTTGAAAGTAAAATTGGTA ACTTTTTTTTAAAAAAGTATTAATTAAAAATCCTTATTTAAATGTACTTAACTTTCACGCAAATAATTAATTAATCTTTG CGCAATTAATATTTGTGAAGGGTGGGCTACATTGTGCGACACGAGGGTGTATTAACCAAAGATGGATCACATAGTTTGAC CCAGAAAAAGAAAACAAGAGAGATCCCATACTTTGAAATAAACGACTCCTGTTGACCAAAATAAAATAAAGGATGTTAGA T
CDS sequence (LotjaGi3g1v0322600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGCCATCTCTGCATATCCTGCGCTTCCTATTCGAGCTTCCATTCCAATGGCTACAGTTCGCTGTGCCTCTCGCCT CTCCATTCCTGTCAACGTTAACACCATTCGTCCTCGCTTAGCCAGTCCCTTCGTACCAGAGGTTGTGGAAGCAGTGGATG CATTGCATTCAGAGTTCAGGGCTGTGGATAATTTGGTTGCGTGCAATACCACTCGTGTATTGAAAGCTTTTCAGAATTCT CGAGTTGGATCTCATCACTTTGCTGGTTGCACTGGTTATGGTCATGATGAAGCTGGGGGACGTGAGGCACTTGACCAAGC CTTTGCCGAAATTTTTGGAGCTGAGTCAGCTATTGTTCGTTCACAGTTCTTCTCAGGTACTCATGCTATCACATGTGCTT TATTTGCATTCCTGAGGCCTGGGGATGAGCTTTTGGCAGTTGCTGGTGCTCCCTATGACACTTTAGAGGAAGTAATTGGG AAAAGGGACTCTGGTGGACTGGGTTCCATCCAAGATTTTGGGGTGGAGTACCGAGAAGTTCCACTTGCGGAGGATGGTGG ACTCGACTGGAATGCGCTGATGGTTTCTATCAAACCCAAAACAAAATGTGCTCTAATACAGAGATCGTGTGGTTATTCAT GGCGTCGAAGTTTGAGTGTTAATGAGATTGGGAGGGCAATAGAAATAATCAAAATGCAAAATCCTGGCTGTTTAGTCATG GTTGACAATTGCTATGGTGAGTTTGTGGAAAGCATTGAACCTCCCATGGTGGGTGCAGATTTGATCGCAGGCAGTCTGAT TAAGAATCCTGGTGGAACGATTGCACCATGTGGTGGATATGTTGCTGGGAGAAAAAAATGGGTTGAAGCAGCTGCAGCCC GTCTTTCTGCGCCCGGGCTCGGTATGGATTGTGGTTCAGTCCCTGGTGATATCATGCGAGCCTTTTTCCAAGGATTATTT CTTTCACCTCAAATGGTTGGTGAAGCAATCAAGGTACTGATTCTTCATTTTAATTATAGAGATATTGTGTTTTTTGTACT CATATCTGATAGTGACTCAGACTTTCTGTATTCTAAGGGTTCCTTTCTGATTGCTGAAGTTTTGGCATCTAAAGGCTATA AAGTGCAGCCACTCCCACGTGTCCCCCGTTATGATACTGTTCAGGCCGTGCAGCTTGGAAGCCGTGAGCGTCTCCTTGCT TTCTGTGAGGCTGTTCAGAGAAGCTCTCCGGTTGGTTCATATACCAAACCAATAGCGGGTACTACTCCTGGATATGCATC TGAGGTGATCTTTGCTGATGGAACCTTTATTGATGGGAGTACTAGTGAGCTTTCATGTGATGGACCTCTTAGAGAGCCAT TTGCTGTATTTTGCCAGGGTGGCACTCATTGGACTCAATGGGGCTTAGTTCTGGGAGAAGTTTTGAAATCTATATGA
Protein sequence (LotjaGi3g1v0322600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHAISAYPALPIRASIPMATVRCASRLSIPVNVNTIRPRLASPFVPEVVEAVDALHSEFRAVDNLVACNTTRVLKAFQNS RVGSHHFAGCTGYGHDEAGGREALDQAFAEIFGAESAIVRSQFFSGTHAITCALFAFLRPGDELLAVAGAPYDTLEEVIG KRDSGGLGSIQDFGVEYREVPLAEDGGLDWNALMVSIKPKTKCALIQRSCGYSWRRSLSVNEIGRAIEIIKMQNPGCLVM VDNCYGEFVESIEPPMVGADLIAGSLIKNPGGTIAPCGGYVAGRKKWVEAAAARLSAPGLGMDCGSVPGDIMRAFFQGLF LSPQMVGEAIKVLILHFNYRDIVFFVLISDSDSDFLYSKGSFLIAEVLASKGYKVQPLPRVPRYDTVQAVQLGSRERLLA FCEAVQRSSPVGSYTKPIAGTTPGYASEVIFADGTFIDGSTSELSCDGPLREPFAVFCQGGTHWTQWGLVLGEVLKSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 335 | 306 | 1.7E-257 | ||
| PANTHER | 30 | 335 | 306 | 1.7E-257 | – | |
| Pfam | 50 | 335 | 286 | 2.4E-120 | ||
| Gene3D | 53 | 337 | 285 | 5.2E-116 | – | |
| SUPERFAMILY | 72 | 476 | 405 | 2.91E-38 | ||
| Gene3D | 91 | 306 | 216 | 5.2E-116 | ||
| Gene3D | 353 | 478 | 126 | 1.1E-48 | – | |
| PANTHER | 359 | 477 | 119 | 1.7E-257 | ||
| PANTHER | 359 | 477 | 119 | 1.7E-257 | – | |
| Pfam | 359 | 477 | 119 | 4.5E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi3g1v0322600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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