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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0322600 |
| Transcript ID | LotjaGi3g1v0322600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT5G15340.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P94479|YNBB_BACSU Uncharacterized protein YnbB; TrEMBL-Plants: tr|A0A1J7HI74|A0A1J7HI74_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0322600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68774728..68779586) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGCTGAAACACAAGCGAAGATAAGGAGGGAAGAGCAGCCAGCAAGAATGCACGCCATCTCTGCATATCCTGCGCTTC CTATTCGAGCTTCCATTCCAATGGCTACAGTTCGCTGTGCCTCTCGCCTCTCCATTCCTGTCAACGTTAACACCATTCGT CCTCGCTTAGCCAGTCCCTTCGTACCAGAGGTACCACTCTTACTGTTGGAAACCCACAACCTTATTTTATCACAAACCCA TTTGGTTACTTTAAATGCAGTGAAAATTGTAAACGAATGATACAAATTTGATCTTTATGAAACCCAGAAGCGTATTTTGT CACAGCATCATTTGGTTGCTTGGGAAGCATTAGATATTGTAAACAGAGGAAAAAGTTATTTTCTTTTTGATGAACTAGGA AATGGGATGTTTGTTTGTTTTTGTCCACTCACTGTAACTGTGAAATCTGAAATATGGGAATTGCTGTCTGGTATGTCTGC ATGGTACTTGTGAAAATGTCTGAAAGAGAGAGAATGTCAAGTTAGTGTATGTTTTTGGGTTGAATAACCTTTTATTTCAT TTTCATATTTTGTTTTTGGTGTTTACTTAATGTGTTAAAGAAGTAAAAGAACTAAATGTTAAATGGTTCTACTGGGTTGT GAACTTGTAATCATCAGTCATCACAGGTTTGTAAGAATGTAAAAGAATCTTCCATTTGAATGTGCAAATCTGCTTGGACC ATAAGGAATGCAGCTTTGAATTTTAAATTTGATTTTCTGAAAAGGGTATATAGCATTTGATTTGGTTTTGTTTTAATTCC TGAAAATATTTCTTTCTCATTCTGATATTCTTGGTTTTTCTTCTGGTTTGCTATGAGCATTGAGCTTGTTGGAGTGTTAT CCAGCTTTACTTCTAATTTATGTTGATTCCGATGTTGAGCGTGCCTGTTTTAAGTGGTGAGAAGGCTCGTAGATTGAGAT AGGACAGTAATGGTTTCCTTTTCTTGCAGTGCAGGTTGTGGAAGCAGTGGATGCATTGCATTCAGAGTTCAGGGCTGTGG ATAATTTGGTTGCGTGCAATACCACTCGTGTATTGAAAGCTTTTCAGAATTCTCGAGTTGGATCTCATGTAAGCATGCCC CTTGATTTAGATAACTGGTTTGTATTATGGTATTCTTGGATTAAATAATCATTTGATTTGATGCTCATGGGTGTATGGAG AATAAATGTTCACTGTTGTTATTGGAATTGGTAGAGATGTTTTATAGGCCATTGGGCTGATTTTCTATGTGACTGATTTT GTTAACATTTTGAGCAAAATCATAAGAAAAAAAGGAAACCCAACAACTTAAGATTTTACTAGTGAGAATCTGGAGCTGCC AATTGAAACATGAACAAAAAGTATGCTTTTACGTCTAACTTTAGGATACTTGACAAACTAGAATTGATGCCTTTTCAGGT AGAGTTGACAGACAGTCATGATTATTGAATTGTAATCCCTGTGATGCAGAAAACTTGAACTTCTGTACTTTGATTTGTGA CAGAGAAATAGGAAATGAAACACTCCCCTTCCTGATCAGAAAAAGATCAAAAGATTATTTGCAAATTCAGCATCTCATCA GTTGGTTGTTTTTACGAACTCTGCCTTAAATTTGATGCCTGTTTTGTCAGGATGTCTTTGATTAGGATGTTGATTATTAT TTTTTTACAGCTCTTGATATTTGATACATACAAGCAGTCAAACTTTTGTTACAATTTCTGTGGTAATAGTTTTCTGTATT TTGGCACTCTAATTGGTTGTTAACATGCATATTGCTATCAGCACTTTGCTGGTTGCACTGGTTATGGTCATGATGAAGCT GGGGGACGTGAGGCACTTGACCAAGCCTTTGCCGAAATTTTTGGAGCTGAGTCAGCTATTGTTCGTTCACAGGTTCTTAG TTTTCCCTGTGTTCTTTTTTAATAGATCACTTCTTAGTTCTTACTGAAGATGCCCTTATAGAAGCCATAATATTCTCATC TATCAACAGTTCTTCTCAGGTACTCATGCTATCACATGTGCTTTATTTGCATTCCTGAGGCCTGGGGATGAGGTAGCCAT TTCCTTTTGACATTCCATGTTTTTCCTTATTTGCTTGCAGTTTACCTCTGTAGTTATATAATATTATCTTGTTGTGTTTT AACTGGAATAAGGTTTAGACTAATATAGCTGTCAGCTTTTGGCAGTTGCTGGTGCTCCCTATGACACTTTAGAGGAAGTA ATTGGGAAAAGGGACTCTGGTGGACTGGGTTCCATCCAAGATTTTGGGGTGGAGTACCGAGAAGTTCCAGTATGCTACTA ATCAGTAATTTCTGTTTGTTCTGGCTGTAATTTATTAGTCTTCTTTCTGACTCTTCTCTGACACTTCTCCATCAGCTTGC GGAGGATGGTGGACTCGACTGGAATGCGCTGATGGTTTCTATCAAACCCAAAACAAAATGTGCTCTAATACAGAGATCGT GTGGTTATTCATGGCGTCGAAGTTTGAGTGTTAATGAGATTGGGAGGGCAATAGAAATAATCAAAGTAAGGTTCTTAATG TTGCTCTTTCTTTTGAATTGTAGCATCATGATTTTCTGTTAGCAATAATAGAAACTTACATATTTTGTAATAATTGTTTA ATTTTGTATATCTAAAATGCCATAGTAATAGAAACTATATTTGCTTTACTGCATGCTCTATAATATTGAGTCAATTTTAT CCTAGCTTCTATGTTTTTCGTTAATTAAACCAGTGATAATTTTCCTACAGTACTGTTGCATTGGAATAACATTTTTCCCA AATAAAATATTGGGAACTTCTGAAGCACACCTGCCTTGTTCCTGTTTTGACCTAAAAACATATGGAAAAAATAGTGGCTT ATTAAAGAAGTATACTTTTAAGGTGTTTGTTTTAGAATTTTACACCCAAAAGATAATCCTTCAGCTGAAGAAATCTGTTT GTAACTCTCCTATAATTTTTCTGATCATGGAATTTTCATGTGATCTCAGTTTTTGATGTAGAGATTGCTGAGGAAATGAG ACAGTAGATGTTGTTTTCATGATGATGTTAAATGACATTATCTAATTAGTTGATTAAAAAGTGCAATTTTGCTCTAACTT TTACCCATGAAATCTTCATTCTATAGCAGTCTTTCCTCATTGTGTATGCAGAAACTGTATTCTCAGTTTAGGTGAAACAC AAGACTAGAGTGAAATTACAAGTTTTATTGTCTCATTGTGTAAGCTGATTGTCTGTGCTTTTCCACGGTAAGTAACCTTT TTCTGATGGTATTTTCACTCTATGACATGCTCCAAATATACATGTGCAGATGCAAAATCCTGGCTGTTTAGTCATGGTTG ACAATTGCTATGGTGAGTTTGTGGAAAGCATTGAACCTCCCATGGTGGTACGTGATAATATGTCATACTTTGTGTTGCTT TATTCCAAGGATGAGTAGTATAACCTTGTTACATTGGTGGGCAGGGTGCAGATTTGATCGCAGGCAGTCTGATTAAGAAT CCTGGTGGAACGATTGCACCATGTGGTGGATATGTTGCTGGGAGAAAAAAATGGGTTGAAGCAGCTGCAGCCCGTCTTTC TGCGCCCGGGCTCGGTATGGATTGTGGTTCAGTCCCTGGTGATATCATGCGAGCCTTTTTCCAAGGATTATTTCTTTCAC CTCAAATGGTTGGTGAAGCAATCAAGGTACTGATTCTTCATTTTAATTATAGAGATATTGTGTTTTTTGTACTCATATCT GATAGTGACTCAGACTTTCTGTATTCTAAGGGTTCCTTTCTGATTGCTGAAGTTTTGGCATCTAAAGGCTATAAAGTGCA GCCACTCCCACGTGTCCCCCGTTATGATACTGTTCAGGTTTTCTAACTGAATCTTGTGTTGTACTTTCTAAATGAAATAT TGGTGACTGATTTTTGTTTTAACGTTGAGTTACCGGCGTTACTAGCAAGAATATATTACTGGTAGAAAAGCTGCTTTTGA TCTAAACAAAAGCTAGTCAGTTAGGAATCTCTTTTCAATTTATGAAATGATAGTTACTCAAATGAAAAGTAAAATCAAAT TTCAATGCCAATAGGCCGTGCAGCTTGGAAGCCGTGAGCGTCTCCTTGCTTTCTGTGAGGCTGTTCAGAGAAGCTCTCCG GTTGGTTCATATACCAAACCAATAGCGGGTACTACTCCTGGATATGCATCTGAGGTCTGTTCAGATTTCTCTCAATGTAA TGTCATGTCTTGCACCTTTTGGGATGTTTATCACTTTTCTTTCCTGGCAAAAATTAATAACTGTTTGATATCAATCTCAG GTGATCTTTGCTGATGGAACCTTTATTGATGGGAGTACTAGTGAGCTTTCATGTGATGGACCTCTTAGAGAGCCATTTGC TGTATTTTGCCAGGTACTTGTATTTTGTATCATGCTATACTACCTATGATGTGCTATTTTCTTGTTATCTTGATTTTATT TTCCAAATGTAGGGTGGCACTCATTGGACTCAATGGGGCTTAGTTCTGGGAGAAGTTTTGAAATCTATATGATGGAGTGT AAATATCAGTCACTTAGTTCATACAAAATATTGTTATGTGGCCTTAAGAGGACAATGGACATGGTTCAGGTTGGTGCAAA TGCAAAGAATAAACAAGTATTACTTGCACATAACAAGATCACTGGGTTCTATTCTAGATTGTGCAGGTTTTGATATGTAT GTAGTTGTCAACCTCATTGAAAGAGCTTCTTTTAGAAGTCTTCTTCTCTGGTAGATTAATAGCTTGTAAAGGGTTGAACA CAATCTTTTTTTTTTTTTGAAAGAAGGTTGAACACAATCTTTGAAAGTAAAATTGGTAA
CDS sequence (LotjaGi3g1v0322600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGCCATCTCTGCATATCCTGCGCTTCCTATTCGAGCTTCCATTCCAATGGCTACAGTTCGCTGTGCCTCTCGCCT CTCCATTCCTGTCAACGTTAACACCATTCGTCCTCGCTTAGCCAGTCCCTTCGTACCAGAGGTTGTGGAAGCAGTGGATG CATTGCATTCAGAGTTCAGGGCTGTGGATAATTTGGTTGCGTGCAATACCACTCGTGTATTGAAAGCTTTTCAGAATTCT CGAGTTGGATCTCATCACTTTGCTGGTTGCACTGGTTATGGTCATGATGAAGCTGGGGGACGTGAGGCACTTGACCAAGC CTTTGCCGAAATTTTTGGAGCTGAGTCAGCTATTGTTCGTTCACAGTTCTTCTCAGGTACTCATGCTATCACATGTGCTT TATTTGCATTCCTGAGGCCTGGGGATGAGCTTTTGGCAGTTGCTGGTGCTCCCTATGACACTTTAGAGGAAGTAATTGGG AAAAGGGACTCTGGTGGACTGGGTTCCATCCAAGATTTTGGGGTGGAGTACCGAGAAGTTCCACTTGCGGAGGATGGTGG ACTCGACTGGAATGCGCTGATGGTTTCTATCAAACCCAAAACAAAATGTGCTCTAATACAGAGATCGTGTGGTTATTCAT GGCGTCGAAGTTTGAGTGTTAATGAGATTGGGAGGGCAATAGAAATAATCAAAATGCAAAATCCTGGCTGTTTAGTCATG GTTGACAATTGCTATGGTGAGTTTGTGGAAAGCATTGAACCTCCCATGGTGGGTGCAGATTTGATCGCAGGCAGTCTGAT TAAGAATCCTGGTGGAACGATTGCACCATGTGGTGGATATGTTGCTGGGAGAAAAAAATGGGTTGAAGCAGCTGCAGCCC GTCTTTCTGCGCCCGGGCTCGGTATGGATTGTGGTTCAGTCCCTGGTGATATCATGCGAGCCTTTTTCCAAGGATTATTT CTTTCACCTCAAATGGTTGGTGAAGCAATCAAGGGTTCCTTTCTGATTGCTGAAGTTTTGGCATCTAAAGGCTATAAAGT GCAGCCACTCCCACGTGTCCCCCGTTATGATACTGTTCAGGCCGTGCAGCTTGGAAGCCGTGAGCGTCTCCTTGCTTTCT GTGAGGCTGTTCAGAGAAGCTCTCCGGTTGGTTCATATACCAAACCAATAGCGGGTACTACTCCTGGATATGCATCTGAG GTCTGTTCAGATTTCTCTCAATGTGATCTTTGCTGA
Protein sequence (LotjaGi3g1v0322600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHAISAYPALPIRASIPMATVRCASRLSIPVNVNTIRPRLASPFVPEVVEAVDALHSEFRAVDNLVACNTTRVLKAFQNS RVGSHHFAGCTGYGHDEAGGREALDQAFAEIFGAESAIVRSQFFSGTHAITCALFAFLRPGDELLAVAGAPYDTLEEVIG KRDSGGLGSIQDFGVEYREVPLAEDGGLDWNALMVSIKPKTKCALIQRSCGYSWRRSLSVNEIGRAIEIIKMQNPGCLVM VDNCYGEFVESIEPPMVGADLIAGSLIKNPGGTIAPCGGYVAGRKKWVEAAAARLSAPGLGMDCGSVPGDIMRAFFQGLF LSPQMVGEAIKGSFLIAEVLASKGYKVQPLPRVPRYDTVQAVQLGSRERLLAFCEAVQRSSPVGSYTKPIAGTTPGYASE VCSDFSQCDLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 402 | 373 | 2.7E-228 | – | |
| PANTHER | 30 | 402 | 373 | 2.7E-228 | ||
| Pfam | 50 | 401 | 352 | 3.8E-145 | ||
| Gene3D | 53 | 401 | 349 | 1.2E-139 | – | |
| SUPERFAMILY | 55 | 380 | 326 | 7.58E-41 | ||
| Gene3D | 91 | 306 | 216 | 1.2E-139 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi3g1v0322600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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