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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0331900 |
| Transcript ID | LotjaGi3g1v0331900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I reaction center subunit V; TAIR: AT1G55670.1 photosystem I subunit G; Swiss-Prot: sp|Q9S7N7|PSAG_ARATH Photosystem I reaction center subunit V, chloroplastic; TrEMBL-Plants: tr|I3S5Z3|I3S5Z3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0331900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70113104..70115694) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGACATTGACATTCAATTTGTAGATTAAGGTCAACAATTTAACACCACAGGGAGAAACCAGAAAATATCTGTGATCC AAAACAATCCAATAGAACCAAGCCAAGTCATCAGCCAAATCTTTATCTCATGGTTTACAATCACAGTGCATCTTATCTTC CTCTTCCACCACCCCTTTTCATAGTATATGATGATCTCATCTCAAATGCTGCTGCTATAGCTACCAATTCTCCATTCTGA AGTGCCCATTTCTCTGATCTTAGTTTACCAAACCAAAAATGGCAGCCTCTGCTTCATCCATGATATCAGCTCCTGCCTTA TCACCCACCATCCAAAAGTCCCAAACCCATCTCCTGAAGCCATCCAACGTGACCTTCCAGGGTCTCAGACCCCTCACAAG GTCCAAAGTTAGCACCCTTTCCACCCCCAACAAAAGGGTCTCTCGTGGATTTGTTGTCAAAGCAGAGCTCAACACTTCTC TGGTGATAAGCCTCAGCACTGGTCTTTCTCTGTTCTTGGGCAGGTTTGTGTTCTTCAACTTCCAGAGGGAGAACGTGGCC AAACAAGGTTTACCTGAGCAGAATGGACTCACACACTTTGAAGCTGGTGACACACGTGCCAAGGAGTACGTGAGTCTCCT GAAATCCAATGACCCTGTTGGGTTCAACATTGTTGATGTCTTGGCTTGGGGTTCCATTGGTCACATTGTTGCTTACTATA TCTTGGCCACTGCTAGCAATGGCTATGACCCTTCCTTCTTTGGTTGATTTGATCATGTTGTTGTTCCATTTTGATAGTAG TTTGTAATGTTATTGATGTATAGTTTCTCTCTGAGATCCGACAAGTTAAGCTACTCAGGATGCATTTGCTACTATGATTA ATGGAAATTGGAACAATTCTGTTAATTTTGTTCTGTAGTTTGTTTTTTGTTATAAATTGATGTAATGTAATAGTCCTCTC TACATAATCAGGTTTGCATAAGATTGTTCTGTTAAAATTGATTGCTATGATGCCAACATTGTTCTGTTAAATTTTATTGC TTTAGTTTAGTGCAACATTGTCAATGGACTCTGTAATTGTAAGAACTTGGAGTGATAGTGTTTTCTTTCTCTTAGGAACT TTGAATAGATCTTAAAAAAGAATCTAGTTATAATGAAGATAGGTAGATGTTTTTGGCAAATAGGGTTAGCTGGCTCACGT AATCAATGATTAAGATAATTTCTTATTAAATCTTTTTTTTTTCTGAAATAAAGGAGGTGGTGACTTGAAAGAGCAGAATG TTGGTATCTAGATACCAGTAGGATTTGAACCCTGGACTTGGGAAATTGTAAACCATCAAGTACCATTTAGGTTATCCATA CCAGCAGCAGAATGGTAGATGAAGAAAAAGGGTGGATTTTCTTTGTTTGGTGGAGAAAACAGAAAATGACTACTAGCATC ATCAATGCTCCTCAATTCTCTTTTCTATATTCCCTCCCTGTGATGAGTAAGTGAGATTGAAAGGGTGCTTGCTATGAATA CAACACAATTTCTCTTCACTCTGCATAAAAATCACATCCCTCTTTCTTTCTTATTTTCACTCCTTGTATCCAGCTAGCTA CTGTTGCTTCTAAGATGTCCCGAGTCTTGGCATTTTTGGTGGTTCTTGGTTTGGTTGGTTTTGTTTTGAAGGGTTTTGAT TCTGCCATTCTGGTATGAAAGCTGCGAGGGTTGTGGAGCCTGAGACTTCTTCACAAATCTTGAGTTGGAACAACACCAGT TTCTTTTCACCTTTCCTTGTCATTTGTTTCTTGCCTATGATGAGGTTCCCTCCCAACCGCCTGCACCCGCGTATATTAGC AGCAGGCATGTGCATCATAATCTGTTTTATGAACTATCAACTGCTCGTGAACCTACCAGGTGGCTTCATCAAGGCAGATG ATGGTGTGGAAGCTTTGATGGCTATTCTGAAGCCTCGGACTTTTGTTAAATTCTGGATTTCGAATGTCATCTCTTTTGTT TCATCTATTGGTGTATTTTGTCTCTTGCTCAAGAGTACACTTCCTCTTAACCAGCCACTTATAACAGCAGGCATTTGCAT CGCCATCACAATCCTAGCTTTTACCATTTTCTTCTATGTGCTGTTCCTGCTGAGGCCAGTGAGAGTTAGCTTAATATAAT TTTAGGTATAGTGTAGTGTAGGTGTTTGTTTAATTTTCAGTGATTGCTCTTGTTAATTGTTTCTACAAATCATTATGTCT ACTCTAGTGTAGTGTGCACTTTCAGTGTGATGTTCTTGTGATAGTGATATTGTTGCTTGTTGCTGTTGAAGTTGATAATT GATATACAAAAGCTATGGTTATTTGTGCATATTCATTATCTCCATGATATAAAAAACTGAAGATCAAACCATGTTTAAGT TCGCTAAAAGGAACATTTCTCTATGCTTATCCAAATTGTAGAGTTGATTTCTTTATTTAATTGTTAGATCACATATTCAA CTCACGAGTTCAATCAAATACTGATATCATAAGAAAAGAAAAGAAAAAGTACTGATATCATAAGAAAATCATCCTATTTT GTTCATATCTCATCCTTTAACTTAATTTTCC
CDS sequence (LotjaGi3g1v0331900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCCTCTGCTTCATCCATGATATCAGCTCCTGCCTTATCACCCACCATCCAAAAGTCCCAAACCCATCTCCTGAA GCCATCCAACGTGACCTTCCAGGGTCTCAGACCCCTCACAAGGTCCAAAGTTAGCACCCTTTCCACCCCCAACAAAAGGG TCTCTCGTGGATTTGTTGTCAAAGCAGAGCTCAACACTTCTCTGGTGATAAGCCTCAGCACTGGTCTTTCTCTGTTCTTG GGCAGGTTTGTGTTCTTCAACTTCCAGAGGGAGAACGTGGCCAAACAAGGTTTACCTGAGCAGAATGGACTCACACACTT TGAAGCTGGTGACACACGTGCCAAGGAGTACGTGAGTCTCCTGAAATCCAATGACCCTGTTGGGTTCAACATTGTTGATG TCTTGGCTTGGGGTTCCATTGGTCACATTGTTGCTTACTATATCTTGGCCACTGCTAGCAATGGCTATGACCCTTCCTTC TTTGGTTGA
Protein sequence (LotjaGi3g1v0331900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASASSMISAPALSPTIQKSQTHLLKPSNVTFQGLRPLTRSKVSTLSTPNKRVSRGFVVKAELNTSLVISLSTGLSLFL GRFVFFNFQRENVAKQGLPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSF FG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 67 | 67 | - | – | |
| PIRSF | 1 | 162 | 162 | 6.2E-66 | ||
| PANTHER | 5 | 161 | 157 | 1.4E-70 | – | |
| PANTHER | 5 | 161 | 157 | 1.4E-70 | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Pfam | 65 | 156 | 92 | 1.3E-22 | ||
| Gene3D | 66 | 161 | 96 | 1.2E-49 | ||
| Phobius | 68 | 88 | 21 | - | – | |
| TIGRFAM | 69 | 157 | 89 | 3.2E-44 | ||
| Phobius | 89 | 162 | 74 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| ProSitePatterns | 128 | 145 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0331900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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