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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0332000 |
| Transcript ID | LotjaGi3g1v0332000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT1G55680.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|G7J0E1|G7J0E1_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi3g1v0332000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70116921..70123698) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGCTATCACCAAGAGGGTGATGCTGAATACATGGCGGATGAATACGAAATGGAAGATGTAGAAGATGATATGGATGA TGTGATTGTTAATAGGGAAACTGACGACCTAGAGTCTGATGGTGATGAATATGATTACTCGGTCAGTGATGTGCTGTTTC TGTTATCTTTCGATCTGTGCTGTTTTATGGATATGGATATGATGTTTATCAGCATATTTTGTATTTGTATTATGATTGCT CATTTGCAATTTGTTGTGTTTTCGGTTTGTCTTTCTCCTACTCGAATGATTCATCAATTAAATGTCAACTATGTATACAG TTGCGCTTATATTTGTAGGAGTAATATTGTAGTTATGTTGCAGAGTAGTAAGGTGGTAGACACTACAGCTGCTCATGCCA GAAGAGGGCAAGACATCCAGGGAATTCCTTGGGATAGCCTTAGCATCACCAGAGAAAGGTATCGGCAAACTAGGCTTGAG CAGTACAAGAATTATGAAAATATCCCCCATTCAGGGGAGAAGTCAGGGAAGGTAGCTATTTGATATCTTTTCTTTTTGAT ATTTCAGAGAATATTTTCTTTAATTTTATAACTTGTCAGAAGTGTAACACCATGTTGACCTGTCTGTCTATTATTTTCTA TCACAAACAGGATTGCATAAATACCAAGAAGGGATTCTCATTTTACGAGTTCCAAAAAAATTCAAGATCTGTAAAGTCAA CAATTCTTCATTTTCAGGTAAGCTGAGTGTACTCTGGTTTTTATGATGTTTTAAGGGTGAACTTTGACATGTTCTGCATT TTGGGTGTGTTCATTCCATATATTTGAGGTTATGGACAACTTATTATTGGCAGAAGAAAACTAAACTTAAAGTTCAAACT TATATGTGAAGCCTGAAGAAGAGCTCTTGTGTATTTAACCCTCCACCTGCAATGGAAGCCTGCTGGACTTGAAACAAGAA CAAAGCATGAGCTTATTAGTACTAGTATTACCGATTGCCGATACCAGATACACCTTATGTTAAAGTTGGTAGCAAGAGTA GGGAAAGAAGGAAGGGTCTAGGGCTAGTTGGACTAGAGTTCGTTTTTCAAAACAAATAGCTTGCACTTTTGGATGCTCTG GTTTCAAAAAGTTGCATTTTGGTTTCCCTTGTTTCAATTAAACAATGTAGACCTATTTATTCCTTCCAGTCCTCGGAATG GATGCATTGAGAAGATACTCAAAATCTTTGAATAAATTCAAACTTAACAGTCAATAAGCCAGATAGTCCACACCTCTGAT ATCTAACTGCTGGAGAGTGTAAAAACACTACGTTGCTTGTCTAGGAATCAGCCTAAGTCTGGAAGAGGGAGCTTTGGACG TCCATAAAGCTGCAACATGTGATAATTATTATTTCAAAGTAGTATCATTTGCATCCTTATGAAAGTCTGTTCATAGGATG CAAATCCTGAGCAGTAATGGGCATGACATAGGCCTTTGTAGAGATAGCATCTTCCTTTTGCAGTTTTTCTGATATCTTTT TTTAAATGATTATGCAGTTGAGGAATTTGGTTTGGGCTACATCAAAGCATGATGTGTATCTTATGTCACAGTTTTCAGTA ACTCATTGGTCTTCTTTGACTAGTACAAGGTCAGAAGTGCTCAACGTTTCAGGACATGTTGCACCATCAGAGGTGAATAA TGTCACTTATAGTAATAATAGTGTTTTTTCCCCAAGTGAATGCCACTGGCTTCTGATTGTTCATTGCGTAAATTTATGAT GAAAATGCCTCAATCATTGTATTTATCTTCCAAGTTATCAATTTTTATTATCAGAAACATCCTGGAAGTCTGTTGGAGGG GTTTACACACACTCAAGTTAGTACACTTGCAGTGAAAGAGAAGCTTCTAGTTGCTGGAGGATTTCAGGGTGAACTTATTT GTAAGGTAAATGTATCATTTGCTTGTGTTTTTAGTAATATTAACTTATGGAATCTGTAGTGGATACATCAGTAAATTGTG CTCCTGGACCTCTGAGCTTTTTTATGGAACATTTGAGAAAACTTTAAAAGTGCAATGCTTCAATTGCATGCACAGCTCAC TCACGCATACATATAGACTTGAATATTGTGATGAGTATCTTTTTTGCATAATATTATAGATTGTAACAGGTCAACAAATA GCTGTTAATGGATCTACAAGAACAATTACATGTTGAAAATTTAGAAATGTTAACAATATTATAAATTATGTAGAGGTGTA CACTGTCCTCTTATTTTATTTGTGTGCATTTGCTATATTTGTTCCTCTATGTGAATAACATGCATATTCTTTTATAACTC TAGCTCTCTCGTTGCTATTTCAATTGCACCACCCACTTTATAATTTTCTTCAAACTCTGTTCAGCATGGTGTGGCTTTGT TATTACCACCATCATTAAACTAAGCCTTTTGAAGATTGTTGTAAAAATGGATAGTCACATGTTGCAAGCAAGAATGGTTT AGATGAGATTTCAATGCGACTATGCACCCAGTTGAATAGAAGATATTTTGAATTTATGGGGGCGATTGAAAGCTTTGTTT GGTTGAGTAGAAGAATGATTTTGTGAATATTATCTTACTAGTTTTATGAGCGTTCACAATTTATTCAAGAGAAAACAATG TAGATAATAGGACCAATTGACTGTCTCCAAATTAATTTCCATCTTTGAAGACAGGAGTTTCTCACAATTTTGACATTATC TTAAATTTTGATAGTTAACTCCTAATTAGGTCCTTGAGAATTTTTTGGAAAAACAATTTTGACCGAATTGACATACTGAT AACCTTTTGAGGTCTAAATGGTGGTTTATTGTAATTTTTGAGGATTATATATATTTTATGGTTTCTTTTTAGGATTTTGT TAGCCATTGCAATTTCTGCATTGAGATTTGTCACTTAATTCAAATAGTCTTATTAGAAATTGATTTTTGTCCTATTTCTG TGTGAAAAGAAATAGTTATTGCTAAGTTGCCACACTGGCTAGAGATATAGGCATATATGGCCAAAGAAGTCCTTAAAAAA GGTAGCTCAATTCTCTCCTCTAAAATAGCTTTTGGGGGTAGAGTCAGGTCAAGCTTGAATCCTAAGACGTTATCGGGGCC TATCCTAGATCAGTTAGTCCTGCAAACTTCACTCCAGATATCCTACATTGGGCATTAAGTGGATGTGTTAAGGTTCTACA TTGACTAGAGGTATGGTCAAAGAAAGAAGTCCCTTGCAATTGGTAGGGCATTCCTCACCTCTAAGCTAGCTTTTAGGGTA AAGTTAAGCCTAGATCAAATTCTAAGAGCTACAAAGCTCGTAAATATAATTTTTGTAGTCAAAATTTTGTGGAGTTCTAG GTCTGCATTGTTTTCCCTCTCTGCAAACAATGTTTGAAATTTGGATTATCTTTCATTCTTGTTAAGTTGTTATTCATAAT TATGCATTTGCAAATGCATATTATATTATACTCCCTCCGTTCCTAATTATAAGACCTAGTTTCAAAATTTTCATGTTCCT AAATATAAGACCTCTTACAATAATCTAGCAAAATGTTTTGTACTCTTCCATATTTACCCCTCACATTAATTGTAGGGTAA AATATGTTTTCCGTCCCTGGACTTTTAGCGAGTGCTGGTTTCCGTCCCTCGCCGGAGTAAAAGCCGACTTTAACCCTTGA ACATAAGGAAAATAGCTGGTTTTCGTCCCCGCCGGAGTGGTGGCGCTGACCACCGTCTCCACATGTATCGGCCATCCTAC GTGGCACATCCACATCAGTTAATGAGGTCTAATTGGATTTTTATTTTTTTTAATTCCACATTAAATTAACTAATTATTAA ATTATGAAAAATATTAAATAAAAATAACAAAATAATTATAACATAAAACCCTTCAACATCTTAAAATAAAATCTTCATTT CAACGCTTAACATCTTCCTAATCTTCATAACCACCATCAACATCTTCATCACCCATCACCATCAGCATCTTCCCCCACCA TCAACATCTACCTCATCCATCATCATCAACATCTTCATCTTTAACAACACACCAAATCCCTAACCTCAGTTTATTTCCCT TTCAGATCTGAATGCCAACATACAAGAAGTTTGGGAGATGATGATTGGTTTCTGTAAAAAGGAAGGAACTTTAGTTGGAT TTGGGTTTCGAATCTGGGTAAAGGTGGTGCCGATCTGATGGTATATGAGCAGTGGTGGTGGTTGCGTTTTGGGCGGTGGT GGTTGCGTTTTTTAGCGGTGGGGGCTCGGTTTCTGGTGGAGGGCGGTGGTTGTTGGTTCTAGGTGGGGGGTGTTACAGCA GGGCTTATGGTTCATCTTCTTCTCCTCTTCTTCTTCTCCAATTACCCATCATCAAGATCTGATTTTTGATTTTTCGTCTC TTCTTCCCCTTTTGCTGGATTCTGGGATTTTTGGGTTTCATAACTTTTGTCTGGGTTAGGGATTGGGGTTGCTATTGGGT GAGGATTGGGGTTTTGGGGAATAAGGGGTGGGGGTTGCGGTGCACGTTGGGGTTGGGTGGTAATTTTGGGTTGTTTCATC ATACATGATATAGATAGTGTTTTTTGGGTTTTTGGGTGTTATGGGTTAAGGTTGTTTTTTAGTTTTGTGATTTTGGGTTG ATGGTTTTCAATTTCTGGAAGGGAAAAGGATTAGGGCTGGGGTTGGGGTGACGGAGAGTGTGGGAGATGGGGGGTGGTGG GAAGAAGAAGAATAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAGAAGATGAGATGCAGACGAGGTTGAAGAGGAAG AGATAAAAAATTTGAACAATTTTTATGTAAAAGTTCATCATTACAAAAAACAATAAGATTAAATAATTTAAGAATTAGAT TAGATAAGATTTAGTTATCGTTATTACTTATTAGTGATTTGAGATTAAGAAAAAAAAAAGAAAAAAAATCCAGCTATGTT CATTAACTGATGTGGCAATGCCACATAGGCTTCCCGTGACATGTGGCCACGGTGGTCAGCGCCACCACTCCAGCAGGGAT GAAAACCAGCTATTTTCCTTATGTTCAAGGGCTAAAGTCAGCTTTTACTCCGGCGAGGGACGGAAACCAGCACTCGCTAA AAGTCTAGGGACGGAAAACATATTTAACCCTTAATTGTATGTTTTCAATTCCAAAGTTACCACCTACCATTAATTACTAC TAATCCAACTAACTATGAATGCAATGATTATTAGTGAGAGAAAATGACAAAGGCTAAATAGGGAAGAATGTATGCATTTT TAAGAAATCAATACACTAATTAGTCACATTAAGTGCTTTCTTAATAAGCGCAATTTTTTGGAATAGGGCTTATATTTAGG AACGGAGGGAGTATTATATTGTTCCATCGTGCTCCACATGCTCTTGTTTTTAGAAACATCATAGAATTCATTCTTTGTAT TAGAACCATCAACTAATATCTTGATTTTGTTACTTTCTTTGTTACTGGAATGCAGCACTTAGACCGACCTGGTGTTAGCT TTTGCTCAAGGACAACTTATGATGATAATGCTATCACTAATGCCCTTGAAATTTATGCTTCTCCCAGGTATATATTTTTC ATCAGTTGCTTCTCCTAGGTATATGGATATCGGTACCGAGTTTAATGCACTTGTTTGCTTTTTGTAATTTTCAGTGGCGC AGTTCATTTCACAGCCTCAAATAATGATTCTGTAGTCAGAGACTTTGATATGGAGAAATTTCAGCTTTCTAAGCATTTTC GTTTTCCCTGGCCAGTGAACGTGAGTCCCTGAGATTTTATTTCTGTCTTTCCACTCAAGACTGATAATTAGATACTTTGT TCAGAATCGCATTACTGTTACTTGACCTTATCGTCTTGCATTATGAGCTATTTTTTCTAGGGGAAATATTGCTTATGCAT TGGCTGTACGGATGAGGCAATTGGCAATCTTAGTTGTCTATTTTCACTGCGCTCTTACTATTTTTATTATTAATGTCTAA ACAATCTTAAGAAATAATGGAAGAATAGGATTGCCTATAATTTTTCCTTTGGAATATGAGCACTACCAGCCATAGTAATC AGGATAATCTTTCAGCTGGATCATACTATTGTAATCTTATCATTACTGTGCTTTCTATTTATATTCCTGTCTTTGTTCCC TTCTTTTGCTGCAGCATACGTCTCTCAGTCCAAATGGTAAGCTACTTCTAATTGTTGGAGACAATCCTGAAAGCATGTTG GTAGACTCCCAAACTGGAAAGGTAGTGTACTCTGTTCCCTTTTTGGGCGAACAATTTTGTATCTAGTTTGATCTTAAGAG AGCTTTTGATGAAATTTTGTTAATCTGAATTGCTTTATTTGCAGACAATTATTTCCTTATGTGGGCACTTGGATTTTTCA TTTGCATCAGCATGGCATCCTGATGGTATGACTTTTGCTACTGGAAACCAGGACAAAACCTGCCGAATTTGGGACATGAG AAATTTATCAAAGTCAGTGGCAGTGCTGAAGGGAAACCTCGGAGCTATCCGTTCAATCCGGTATACTTCAGATGGCCAGT ATTTGGCTATGGCCGAGCCAGCAGATTTTGTGCATGTATATGATGTGAAAAGCGGGTACGAGAGAGAACAGGAAATTGAT TTTTTTGGTGAGATATCTGGCATCTCTTTCAGTCCGGACACTGAATCCCTTTTCATTGGGGTTTGGGATCGCACTTATGG CAGCCTTCTTGAGTATGGCCGGCGCCAGAACTATTCATACCTTGATTCAATGATTTAG
CDS sequence (LotjaGi3g1v0332000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCTATCACCAAGAGGGTGATGCTGAATACATGGCGGATGAATACGAAATGGAAGATGTAGAAGATGATATGGATGA TGTGATTGTTAATAGGGAAACTGACGACCTAGAGTCTGATGGTGATGAATATGATTACTCGAGTAGTAAGGTGGTAGACA CTACAGCTGCTCATGCCAGAAGAGGGCAAGACATCCAGGGAATTCCTTGGGATAGCCTTAGCATCACCAGAGAAAGGTAT CGGCAAACTAGGCTTGAGCAGTACAAGAATTATGAAAATATCCCCCATTCAGGGGAGAAGTCAGGGAAGGATTGCATAAA TACCAAGAAGGGATTCTCATTTTACGAGTTCCAAAAAAATTCAAGATCTGTAAAGTCAACAATTCTTCATTTTCAGTTGA GGAATTTGGTTTGGGCTACATCAAAGCATGATGTGTATCTTATGTCACAGTTTTCAGTAACTCATTGGTCTTCTTTGACT AGTACAAGGTCAGAAGTGCTCAACGTTTCAGGACATGTTGCACCATCAGAGAAACATCCTGGAAGTCTGTTGGAGGGGTT TACACACACTCAAGTTAGTACACTTGCAGTGAAAGAGAAGCTTCTAGTTGCTGGAGGATTTCAGGGTGAACTTATTTGTA AGCACTTAGACCGACCTGGTGTTAGCTTTTGCTCAAGGACAACTTATGATGATAATGCTATCACTAATGCCCTTGAAATT TATGCTTCTCCCAGTGGCGCAGTTCATTTCACAGCCTCAAATAATGATTCTGTAGTCAGAGACTTTGATATGGAGAAATT TCAGCTTTCTAAGCATTTTCGTTTTCCCTGGCCAGTGAACCATACGTCTCTCAGTCCAAATGGTAAGCTACTTCTAATTG TTGGAGACAATCCTGAAAGCATGTTGGTAGACTCCCAAACTGGAAAGACAATTATTTCCTTATGTGGGCACTTGGATTTT TCATTTGCATCAGCATGGCATCCTGATGGTATGACTTTTGCTACTGGAAACCAGGACAAAACCTGCCGAATTTGGGACAT GAGAAATTTATCAAAGTCAGTGGCAGTGCTGAAGGGAAACCTCGGAGCTATCCGTTCAATCCGGTATACTTCAGATGGCC AGTATTTGGCTATGGCCGAGCCAGCAGATTTTGTGCATGTATATGATGTGAAAAGCGGGTACGAGAGAGAACAGGAAATT GATTTTTTTGGTGAGATATCTGGCATCTCTTTCAGTCCGGACACTGAATCCCTTTTCATTGGGGTTTGGGATCGCACTTA TGGCAGCCTTCTTGAGTATGGCCGGCGCCAGAACTATTCATACCTTGATTCAATGATTTAG
Protein sequence (LotjaGi3g1v0332000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCYHQEGDAEYMADEYEMEDVEDDMDDVIVNRETDDLESDGDEYDYSSSKVVDTTAAHARRGQDIQGIPWDSLSITRERY RQTRLEQYKNYENIPHSGEKSGKDCINTKKGFSFYEFQKNSRSVKSTILHFQLRNLVWATSKHDVYLMSQFSVTHWSSLT STRSEVLNVSGHVAPSEKHPGSLLEGFTHTQVSTLAVKEKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNALEI YASPSGAVHFTASNNDSVVRDFDMEKFQLSKHFRFPWPVNHTSLSPNGKLLLIVGDNPESMLVDSQTGKTIISLCGHLDF SFASAWHPDGMTFATGNQDKTCRIWDMRNLSKSVAVLKGNLGAIRSIRYTSDGQYLAMAEPADFVHVYDVKSGYEREQEI DFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRRQNYSYLDSMI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 444 | 411 | 1.5E-296 | – | |
| PANTHER | 34 | 444 | 411 | 1.5E-296 | – | |
| SUPERFAMILY | 111 | 426 | 316 | 5.13E-32 | ||
| Gene3D | 224 | 441 | 218 | 7.0E-29 | ||
| SMART | 307 | 346 | 40 | 3.9E-6 | ||
| Pfam | 309 | 346 | 38 | 2.1E-4 | ||
| ProSiteProfiles | 314 | 355 | 42 | 12.413 | ||
| ProSiteProfiles | 314 | 398 | 85 | 15.557 | ||
| SMART | 350 | 389 | 40 | 1.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0332000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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