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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0333400 |
| Transcript ID | LotjaGi3g1v0333400.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 5; TAIR: AT2G43280.1 Far-red impaired responsive (FAR1) family protein; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SYH3|A0A151SYH3_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi3g1v0333400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70268500..70269415) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAACAAATGTCATCTCCTGCATTGTTTACTTTCATGGTTTCATTGTAAAAAACTCTTTGCTGGGTTCAAAAGAAAAG TTATTCTGTGACAGGGGATCCAAATGAGGGGTGTAGGGTGCTAGAGAGTACTTCTGGTGGAGAATTGGGTGTCTCTGATG ACCATGCTATCCAGGAACCGTATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGGTATTCTATGACGAATATGCC CGTCATGTTGGATTTGTCATGCGTGTGATGTCTTGCCGACGCTCAGAAAGAGATGGTAGGATTCTTGCCCGTAGGCTTGG ATGTAATAAGGAGGGTCATTGTCTCAACATCCGAGGGAAATTAGGGTCAATTCGCAGACCAAGAGCCAGCACAAGGGAAG GTTGTAAGGCGATGATTCATATCAAATATGACAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCAT CCACTAGTGGTCTCTCCACGTGAAGCACGCCAGACAATGGTAGGTCCTTATTTCTTATCTAAAAGTATACTCCATCATTG ATAAATGTTTTACAGTCATTTCAATTATTAGTGATATCTTGTGAAGCACACCAGACCTAAATTATTGTTGTTATATAACA TCCCTGGTTTCTTAAAACAAAAGGATGTGTTTGCTAACATTTTCTTATTCACTTTCTGTTGCATTTCTGTTTTAGGATGA GAAGGATAAAAAAATTCAGGAATTAACAGCGGAGATTCGGATAAAAAAACGGTTGTGTGCGACATATCAAGAGCAGTTAA GTTCTTTTATGAAAATTGTTGAAGAGCACAGTGACAAGCTGTCTGTGAAAATTCATCACATAGTTAATAATCTTAAGGAA TTTGAACCCATAGAAGAGCTTTTGCACCAGACGTAG
CDS sequence (LotjaGi3g1v0333400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTTGAATCTGAAGATGCTGCTAAGGTATTCTATGACGAATATGCCCGTCATGTTGGATTTGTCATGCGTGTGAT GTCTTGCCGACGCTCAGAAAGAGATGGTAGGATTCTTGCCCGTAGGCTTGGATGTAATAAGGAGGGTCATTGTCTCAACA TCCGAGGGAAATTAGGGTCAATTCGCAGACCAAGAGCCAGCACAAGGGAAGGTTGTAAGGCGATGATTCATATCAAATAT GACAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCACTAGTGGTCTCTCCACGTGAAGCACG CCAGACAATGGATGAGAAGGATAAAAAAATTCAGGAATTAACAGCGGAGATTCGGATAAAAAAACGGTTGTGTGCGACAT ATCAAGAGCAGTTAAGTTCTTTTATGAAAATTGTTGAAGAGCACAGTGACAAGCTGTCTGTGAAAATTCATCACATAGTT AATAATCTTAAGGAATTTGAACCCATAGAAGAGCTTTTGCACCAGACGTAG
Protein sequence (LotjaGi3g1v0333400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFESEDAAKVFYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCLNIRGKLGSIRRPRASTREGCKAMIHIKY DKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIV NNLKEFEPIEELLHQT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 175 | 175 | 4.3E-111 | – | |
| PANTHER | 1 | 175 | 175 | 4.3E-111 | – | |
| Pfam | 12 | 100 | 89 | 4.0E-29 | ||
| Coils | 110 | 137 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0333400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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