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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0335700 |
| Transcript ID | LotjaGi3g1v0335700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid transporter, putative; TAIR: AT1G71680.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5; TrEMBL-Plants: tr|G7J063|G7J063_MEDTR Transmembrane amino acid transporter family protein; Found in the gene: LotjaGi3g1v0335700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70568723..70571663) extracted from Lotus japonicus Gifu genome v1.2.
GTTCTTCTTCATTACAAGGCGGAGAAGGATAAATCTGAACAATTCATAGCTTTTTTTACTTGTTTTTCGGTATAAATCAA TTTATGGTTATTAAGAATTATACTTATCCATATCTTCAATATCTGATCTTTGACACATCCCTCATTATAGGATCTTTTTA GATTACAAAGTCTTGAACATAACCGATTTTGATTTGGTGAATTTGAGTCCCTACTTTTACTCCTTTGTACTCAGTTGAAT TACTCAAGTGTTTTAACCATGTGACACATGTGTTTTTATTTTACTTCCCTTACTTAAACATAGGAAGCCAGGACTAATTC AGCACAAGAGAATCTTTAAATTGTGGAAATCTCAACCACTTGGAAAAAGTTCAGCTACTGAAGATACCTCTCCTATTGAG TGAAGAATTGCAATTTGTAGACTAATGGTATATTCTGATCATTCAATCCTTTCTTATATCATCACATCACCAAGTTATGG GTGCAATGCGATTCAATCATTTACCATTACCATGTTATACTAATTTTCATCATGATGCATTAACTGGTTCAGGGGCGTGG CGGTAACAGTGGGAACAGATCACAAGAACCACCTAATGGGGAGAACCTTGAAAGCTGGTTGCCCATCACTGCATCTAGGG AAGCAAAGTGGTGGTACTCAGCTTTTCACAATGTAACAGCTATGGTGGGTGCTGGAGTGCTAGGCTTGCCATTTGCTGTA TCCCAGCTTGGATGGTATGTATACAAGGCAAATGTGTTGGCCGCCTTTCGAAGAGAACATTTTTCCTTACTCCAATGTTA TATTCGTTCAAACCCTCAAAAGTTTTTGTTACCTTGTCCAATTAGGCTTTGTTGATTTTTCTTAATGTGTTAAGATTTTT ATCCCTTTACCAATTTTTTCTGGTTCTGTCCATCAAAGAATGTTAACTTGTGCATTTGATTGGAAACTTAGGCATGCCCT TTTGATTTTTGTAGGAGTGCAGGGATTATTATACTCGTAGTGTCATGGCTTGTGACATTTTACACACTCTGGCTACTTGT GGAGATGCATGAACTTGTACCGGGGAAGAGGTTTGATCGATACTTTGATTTGGGTGAGAACATTTTTGGGCCCAAAGTTG GATTCTGGATGGTAATGCCACAGCAGCTAACAGTTCAGGTGGCTTCCACTATTGTGTATTGTGTCACTGGTGGGAAGTCC CTGAAGAAGTTCTGTGATATGACTTCATTCTTGGGTGGAATTAGACAGACATATCACATTCTCATCTTTGTGGTCCTGCA ATTAGGCTTTTCACAAAGTCCTAACTTCAACACCTTGAAAGGAATTTCTTTGTTGGCTGCAATCATGTCTATCGGGTACG CGGTTATACAACAAGTTAATTGCATGATCTATTTTTTTTTTCAATTTCGTATTTAGCATAGTGCGCCTTATCAAAATCTA TATTTTTTTTTTTGCAGATATTCCATGGTGGCATTTGTCACATCTATTGTGAAGGGGATCGATCATCATCCTAGTCATTA CGGTGTTCGATCGCATACCACTCCTGGGAAGATCTTTGACATTTTCAATGCGCTAGGAACCATAGCATTTGCATTTGCAG GACACAGTGTGGTTTTAGAGATTCAAGCTACATTGCCCTCGACAGAGGAAACACCTTCCAAAAAACCAATGTGGCGAGGT GTGGTAGCTGCATACTTGATAGTGATTTCTTGCTATCTTTTAGTTGCAATATCTGGTTTTTGGGCATTTGGAGATCTTGT AGAAGATGATGTCCTTCTCTCACTTGAACATCCCAATTGGGTTATTGCTGCTGCTAACCTCATGGTATTCATTCATGTTC TAGGAAGCTTTCAGGTACACAAATATAAATTACTTTAAATCCATTATCATTGTCAACAAACATTTAGAGTTTAAATAGCT TCCTCTAATGTATACTAATTACACTAATATATTCATCATAATTAACAACTATATTCTTCATGCTAAAAGGTTTTTGCAAT GCCGGTTTTTGATACAATCGAGTCATCTTTGGTGCAAAGGTGGGATTTTAGTCCATCAAGGACCCTTCGTGTTGTTGCTC GAAGCCTGTTTGTAGGTAAGAATGTATTGAATAATGTTATGTGAGTTCCTTAAAAATTATATTTTTTAGCATGTTCAAAT GTTATAAATAATTTTTTTTGGTTACGAGAGGAAATCAAATGTTTAGTTTGAATTATTGTACATCTGACAAACATTTTCTT TTCTGTAGCTGTGGTAGGATTTGTAGCTATATGCATTCCATTTTTTGGAGGATTGCTAGGGTTTTTTGGAGGACTAGCAT TCACATCAACATCATACATTGTAAGAATTCTTAAATTTATTAGTAACCATATTTTAAATCTCATATTATGAGTCTTTCTT TTTCTAATTTCAATTTCATACATGTAGCTTCCTTGTGTATTATGGCTTGGAGCAAAAAAGCCAAAGCGATGGAGCTTTCA TTGGACTGCATCACTAGTAATCTTCACATTAAACTATTGATTCAACATGTGTTTAATTTAATTTTATATAAATAATTCAT ATATCTAATTATTATTTTATTATTTTTACAGATTTGCACGATTGTCGGCATTTTAATAGCAATCGTTGCACCTATCGGAG GAATACGAACAATTATTGTTTCCGCAAAGACTTATAGGATGTTTTCTTGATTATGAGATTTATATCATTAATAGCTATGT AATACAATATTTTTAATTTTGTAGAACTCTTTTGTTTAGATCAGCTTATCCGCAGAAATTTTAGTTGCGATGATATCAAC ATTTGTAAATAATTCTTAAGATTCTAGCATGCTACTAATATGGAGAGTAAGATTGACTAGGAAAAACATCATGTATTTGC TTTCAATTTGTAGCTACATTTTTGTTTACCTATGGTCAAGCCATGCAATGGTGGAATAAAT
CDS sequence (LotjaGi3g1v0335700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCGTGGCGGTAACAGTGGGAACAGATCACAAGAACCACCTAATGGGGAGAACCTTGAAAGCTGGTTGCCCATCAC TGCATCTAGGGAAGCAAAGTGGTGGTACTCAGCTTTTCACAATGTAACAGCTATGGTGGGTGCTGGAGTGCTAGGCTTGC CATTTGCTGTATCCCAGCTTGGATGGAGTGCAGGGATTATTATACTCGTAGTGTCATGGCTTGTGACATTTTACACACTC TGGCTACTTGTGGAGATGCATGAACTTGTACCGGGGAAGAGGTTTGATCGATACTTTGATTTGGGTGAGAACATTTTTGG GCCCAAAGTTGGATTCTGGATGGTAATGCCACAGCAGCTAACAGTTCAGGTGGCTTCCACTATTGTGTATTGTGTCACTG GTGGGAAGTCCCTGAAGAAGTTCTGTGATATGACTTCATTCTTGGGTGGAATTAGACAGACATATCACATTCTCATCTTT GTGGTCCTGCAATTAGGCTTTTCACAAAGTCCTAACTTCAACACCTTGAAAGGAATTTCTTTGTTGGCTGCAATCATGTC TATCGGATATTCCATGGTGGCATTTGTCACATCTATTGTGAAGGGGATCGATCATCATCCTAGTCATTACGGTGTTCGAT CGCATACCACTCCTGGGAAGATCTTTGACATTTTCAATGCGCTAGGAACCATAGCATTTGCATTTGCAGGACACAGTGTG GTTTTAGAGATTCAAGCTACATTGCCCTCGACAGAGGAAACACCTTCCAAAAAACCAATGTGGCGAGGTGTGGTAGCTGC ATACTTGATAGTGATTTCTTGCTATCTTTTAGTTGCAATATCTGGTTTTTGGGCATTTGGAGATCTTGTAGAAGATGATG TCCTTCTCTCACTTGAACATCCCAATTGGGTTATTGCTGCTGCTAACCTCATGGTATTCATTCATGTTCTAGGAAGCTTT CAGGTTTTTGCAATGCCGGTTTTTGATACAATCGAGTCATCTTTGGTGCAAAGGTGGGATTTTAGTCCATCAAGGACCCT TCGTGTTGTTGCTCGAAGCCTGTTTGTAGCTGTGGTAGGATTTGTAGCTATATGCATTCCATTTTTTGGAGGATTGCTAG GGTTTTTTGGAGGACTAGCATTCACATCAACATCATACATTCTTCCTTGTGTATTATGGCTTGGAGCAAAAAAGCCAAAG CGATGGAGCTTTCATTGGACTGCATCACTAATTTGCACGATTGTCGGCATTTTAATAGCAATCGTTGCACCTATCGGAGG AATACGAACAATTATTGTTTCCGCAAAGACTTATAGGATGTTTTCTTGA
Protein sequence (LotjaGi3g1v0335700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGGNSGNRSQEPPNGENLESWLPITASREAKWWYSAFHNVTAMVGAGVLGLPFAVSQLGWSAGIIILVVSWLVTFYTL WLLVEMHELVPGKRFDRYFDLGENIFGPKVGFWMVMPQQLTVQVASTIVYCVTGGKSLKKFCDMTSFLGGIRQTYHILIF VVLQLGFSQSPNFNTLKGISLLAAIMSIGYSMVAFVTSIVKGIDHHPSHYGVRSHTTPGKIFDIFNALGTIAFAFAGHSV VLEIQATLPSTEETPSKKPMWRGVVAAYLIVISCYLLVAISGFWAFGDLVEDDVLLSLEHPNWVIAAANLMVFIHVLGSF QVFAMPVFDTIESSLVQRWDFSPSRTLRVVARSLFVAVVGFVAICIPFFGGLLGFFGGLAFTSTSYILPCVLWLGAKKPK RWSFHWTASLICTIVGILIAIVAPIGGIRTIIVSAKTYRMFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 10 | 438 | 429 | 2.8E-199 | – | |
| PANTHER | 10 | 438 | 429 | 2.8E-199 | – | |
| Pfam | 31 | 427 | 397 | 1.9E-92 | ||
| Phobius | 34 | 56 | 23 | - | – | |
| TMHMM | 35 | 57 | 23 | - | – | |
| Phobius | 57 | 61 | 5 | - | – | |
| Phobius | 62 | 84 | 23 | - | – | |
| TMHMM | 62 | 84 | 23 | - | – | |
| Phobius | 85 | 145 | 61 | - | – | |
| Phobius | 146 | 167 | 22 | - | – | |
| TMHMM | 146 | 168 | 23 | - | – | |
| Phobius | 168 | 178 | 11 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 179 | 200 | 22 | - | – | |
| Phobius | 201 | 264 | 64 | - | – | |
| TMHMM | 264 | 286 | 23 | - | – | |
| Phobius | 265 | 286 | 22 | - | – | |
| Phobius | 287 | 305 | 19 | - | – | |
| Phobius | 306 | 328 | 23 | - | – | |
| TMHMM | 306 | 328 | 23 | - | – | |
| Phobius | 329 | 348 | 20 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 349 | 369 | 21 | - | – | |
| Phobius | 370 | 374 | 5 | - | – | |
| Phobius | 375 | 396 | 22 | - | – | |
| TMHMM | 375 | 397 | 23 | - | – | |
| Phobius | 397 | 407 | 11 | - | – | |
| Phobius | 408 | 432 | 25 | - | – | |
| TMHMM | 410 | 432 | 23 | - | – | |
| Phobius | 433 | 442 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0335700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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