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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0343000 |
| Transcript ID | LotjaGi3g1v0343000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxygen-dependent choline dehydrogenase; TAIR: AT1G73050.1 Glucose-methanol-choline (GMC) oxidoreductase family protein; Swiss-Prot: sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like; TrEMBL-Plants: tr|G7JVJ8|G7JVJ8_MEDTR Glucose-methanol-choline (GMC) oxidoreductase family protein; Found in the gene: LotjaGi3g1v0343000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71861997..71864705) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATAATAATAATAATAATAATAATAATTTCGTTTTTTTTGTTTTTTACATTTGGAGGATATTATATTATGGTGAAAG ATACATAGCATGAAGGGAAGTAGGGAACGTTAATAGAAACCAGTGAACCCACTCGTGTTGCAAACAATATCATATTATCA TTTACAAAACGGTTTTCTTTCCCTCCTTCTTCTTCATTCCCTTCTCAATCTTCTCCATCCTCTCCAAGAACCAACAACAA TGGCAGAAACCACCACCATCATTACCTTACCATCTCTTGCAATGCTGATATTCTTCACCACACTCTTCGCCTCCGCCGCT CAACAACAAAACCAATCTCAGCACCATGAAAATGCAGACCCGACCTACCTCAAGATGGTAGCCAACGCGAGCTCGTTTCC GCCGGAAGACTACTACGACTACATCATCATCGGCGGCGGCACAGCGGGGTGCCCACTGGCAGCAACACTGTCACGAGTCT CTCGCGTTCTGCTTCTTGAACGAGGAGCCATCGGCCACGGAAACCCAAATCTCATGACCCAAGAAGGCTTCTTGAGCACG CTGTTAATCTCCAACGTCAACGACGACCACTCCCCGGCGCAACCCTTCACCTCCGAGGAGGGCATCAACAACGCCCGCGG CCGCGTCCTCGGCGGCAGCAGCGCCATCAATGCCGGATTCTACAGCAGAGCCGACGCCGATTTCTTCAACAAATCTGGGT TGAGCTGGGACATGAGGCTCGTCAACGAGTCCTACGAGTGGGTCGAGAGGGAAATCGTGTTCACGCCGCACCTCCGGACG TGGCAATCGGCGGTTCGTGATGGGTTGCTGGAAGCAGGGGTGGGTCCCTTCAATGGCTTCACCGTCGACCACGCCACCGG GACCAAGATCGGTGGCTCCACCTTCGATTCCGCCGGAACAAGACACACCGCCGCTGATCTTCTGAATTACGCGAAACCCT CCAATCTCAAGGTGGCGGTGCACGCCACCGTCGAGAGGGTGCTTCTTGCTGCCTCAACCCTTGATTCAAATTCTGCGATT GGGGTTCTTTACCGTGACGAATTGGGGGGGTATCACCACGCGATTCTGCGGGAACGCGGTGAGGTGATTCTTGCTGCTGG TGCGATTGGGAGTCCTCAGCTTCTTCTTCTCAGTGGGATTGGGCCGAGATCTTACCTTTCTTCATGGGGGATTCCGGTGG CGCATCATCTTCCCTATGTTGGGCATTTCCTCTATGACAATCCTCGCAATGGAATCACTATTCTCCCTTCAGTTCCATTG GAGCATTCTCTCATACAGGTGGTGGGCATAACGGATTCTGGTTCTTACATCGAAGCAGCATCGAATGTGGTTCCGTTTCT TGCTTCTCCTCCCCATTCGGTCTTCATTCGCACCCCTGCGCCGCCGCTTTACCTCACCGTGGCCACCCTCATGTCGAAGA TTTCAGGGCCTGCTTCTTCTGGTTTTCTCAGACTGGCTTCCACTGATGTCAGGTTTAACCCCATTGTGAGGTTTAATTAC TTCAACAACCCGGTTGATGTCGAGCGCTGCGTGAATGGGACTAGGAAGATTGGGGATGTTCTCAGGAGCAGGGCTATGAA TGATTTCAAGTTCAGGAACCGGTTGGGGGTGAGGGATTTCAGGTTTGTTGGACCTGCATTGCCGCGTGACCAGAGGGACT ATGGTCAGATGGCTAATTTCTGCCGCCGGACGGTGAGCACCATATGGCATTACCATGGGGGCTGTGTTGTGGGCAGGGTG GTTGATCCTCAGCTTAGGGTCATTGGAATTGATTCACTTCGGGTTGTGGATGGTTCAGTGTTTAGTGTGTCGCCGGGAAC CAATCCTCAGGCCACCATCATGATGCTTGGAAGGTGAGTTTAGCTTCTCTTGTTCATGAATCATGATCACCCCCTCACTT TACCTTCAGTGCAATGTGTATGTTTTTAGCATAATAATGTATACTGATGAAGTCATGTTATGTTATTTTGGCAGGTATTT TGGGATCAAGATAAACAGAGAAAGAGGTAGATACCAATGATTCTTCACTCTCCTCTTCTGCTTGGCTATTGTACAAATGT GAATACTTAGCTTTTGAATTTTTTGGTATTGTAGCATATTAGGTTTTGATGTTCAATTTGGATCATTGATAGATACTTAG AGAGTGTAAAGAATCCACATCTAGCAGATAACAGTGTAAGAAACTGTAACAAGTAGGGGTAGATTTGTAACATTTTCACA TAATTGTTGATTAGATTGGATTCATACCTGAATAATGTGAAGTTGCCAGCAATCAAAGCATTGCCAAGTTTCTTGCCTTC ATGGTCTATATTTTTGTCCCCTTCTATCTGTTGTGTTCATAGAGTTGTAATGATATATTTCGTTATACCATTTCCATGCC TACTTTTCTTTCATCTTGTTTAACTGTTTTGTTGAAGTTGTGAGGCTCATCCAAGCTACTTTATTATTCATTTCAGTGCA AACTGTTTGCATCCGAGAAAGTATTTGTTTAGAGATTATGCAGGAATGTACAATAGCATCAGTTAGAATCTGGCACTAAC TCTTGGTTTGGATAATAGAGCATTGTGCAAAGTGTAAACTCGTGACATACTTTGGTTTTATTTGGTTTATGTGCTGGCCC ATTTGATCCCAGCTCGTAAAAGGAATGGGCTGGACTGGACAACACCACCCCATCAGTCTACAATTTGAG
CDS sequence (LotjaGi3g1v0343000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAACCACCACCATCATTACCTTACCATCTCTTGCAATGCTGATATTCTTCACCACACTCTTCGCCTCCGCCGC TCAACAACAAAACCAATCTCAGCACCATGAAAATGCAGACCCGACCTACCTCAAGATGGTAGCCAACGCGAGCTCGTTTC CGCCGGAAGACTACTACGACTACATCATCATCGGCGGCGGCACAGCGGGGTGCCCACTGGCAGCAACACTGTCACGAGTC TCTCGCGTTCTGCTTCTTGAACGAGGAGCCATCGGCCACGGAAACCCAAATCTCATGACCCAAGAAGGCTTCTTGAGCAC GCTGTTAATCTCCAACGTCAACGACGACCACTCCCCGGCGCAACCCTTCACCTCCGAGGAGGGCATCAACAACGCCCGCG GCCGCGTCCTCGGCGGCAGCAGCGCCATCAATGCCGGATTCTACAGCAGAGCCGACGCCGATTTCTTCAACAAATCTGGG TTGAGCTGGGACATGAGGCTCGTCAACGAGTCCTACGAGTGGGTCGAGAGGGAAATCGTGTTCACGCCGCACCTCCGGAC GTGGCAATCGGCGGTTCGTGATGGGTTGCTGGAAGCAGGGGTGGGTCCCTTCAATGGCTTCACCGTCGACCACGCCACCG GGACCAAGATCGGTGGCTCCACCTTCGATTCCGCCGGAACAAGACACACCGCCGCTGATCTTCTGAATTACGCGAAACCC TCCAATCTCAAGGTGGCGGTGCACGCCACCGTCGAGAGGGTGCTTCTTGCTGCCTCAACCCTTGATTCAAATTCTGCGAT TGGGGTTCTTTACCGTGACGAATTGGGGGGGTATCACCACGCGATTCTGCGGGAACGCGGTGAGGTGATTCTTGCTGCTG GTGCGATTGGGAGTCCTCAGCTTCTTCTTCTCAGTGGGATTGGGCCGAGATCTTACCTTTCTTCATGGGGGATTCCGGTG GCGCATCATCTTCCCTATGTTGGGCATTTCCTCTATGACAATCCTCGCAATGGAATCACTATTCTCCCTTCAGTTCCATT GGAGCATTCTCTCATACAGGTGGTGGGCATAACGGATTCTGGTTCTTACATCGAAGCAGCATCGAATGTGGTTCCGTTTC TTGCTTCTCCTCCCCATTCGGTCTTCATTCGCACCCCTGCGCCGCCGCTTTACCTCACCGTGGCCACCCTCATGTCGAAG ATTTCAGGGCCTGCTTCTTCTGGTTTTCTCAGACTGGCTTCCACTGATGTCAGGTTTAACCCCATTGTGAGGTTTAATTA CTTCAACAACCCGGTTGATGTCGAGCGCTGCGTGAATGGGACTAGGAAGATTGGGGATGTTCTCAGGAGCAGGGCTATGA ATGATTTCAAGTTCAGGAACCGGTTGGGGGTGAGGGATTTCAGGTTTGTTGGACCTGCATTGCCGCGTGACCAGAGGGAC TATGGTCAGATGGCTAATTTCTGCCGCCGGACGGTGAGCACCATATGGCATTACCATGGGGGCTGTGTTGTGGGCAGGGT GGTTGATCCTCAGCTTAGGGTCATTGGAATTGATTCACTTCGGGTTGTGGATGGTTCAGTGTTTAGTGTGTCGCCGGGAA CCAATCCTCAGGCCACCATCATGATGCTTGGAAGGTATTTTGGGATCAAGATAAACAGAGAAAGAGTGCAAACTGTTTGC ATCCGAGAAAGTATTTGTTTAGAGATTATGCAGGAATGTACAATAGCATCAGTTAGAATCTGGCACTAA
Protein sequence (LotjaGi3g1v0343000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETTTIITLPSLAMLIFFTTLFASAAQQQNQSQHHENADPTYLKMVANASSFPPEDYYDYIIIGGGTAGCPLAATLSRV SRVLLLERGAIGHGNPNLMTQEGFLSTLLISNVNDDHSPAQPFTSEEGINNARGRVLGGSSAINAGFYSRADADFFNKSG LSWDMRLVNESYEWVEREIVFTPHLRTWQSAVRDGLLEAGVGPFNGFTVDHATGTKIGGSTFDSAGTRHTAADLLNYAKP SNLKVAVHATVERVLLAASTLDSNSAIGVLYRDELGGYHHAILRERGEVILAAGAIGSPQLLLLSGIGPRSYLSSWGIPV AHHLPYVGHFLYDNPRNGITILPSVPLEHSLIQVVGITDSGSYIEAASNVVPFLASPPHSVFIRTPAPPLYLTVATLMSK ISGPASSGFLRLASTDVRFNPIVRFNYFNNPVDVERCVNGTRKIGDVLRSRAMNDFKFRNRLGVRDFRFVGPALPRDQRD YGQMANFCRRTVSTIWHYHGGCVVGRVVDPQLRVIGIDSLRVVDGSVFSVSPGTNPQATIMMLGRYFGIKINRERVQTVC IRESICLEIMQECTIASVRIWH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 582 | 558 | - | – | |
| PANTHER | 32 | 557 | 526 | 1.1E-256 | – | |
| PANTHER | 32 | 557 | 526 | 1.1E-256 | – | |
| PIRSF | 34 | 369 | 336 | 7.2E-59 | ||
| SUPERFAMILY | 56 | 551 | 496 | 1.94E-50 | ||
| Pfam | 59 | 334 | 276 | 1.0E-30 | ||
| Gene3D | 59 | 544 | 486 | 3.3E-168 | ||
| ProSitePatterns | 134 | 157 | 24 | - | ||
| Gene3D | 181 | 495 | 315 | 3.3E-168 | – | |
| ProSitePatterns | 294 | 308 | 15 | - | ||
| SUPERFAMILY | 331 | 501 | 171 | 7.65E-33 | – | |
| PIRSF | 365 | 560 | 196 | 2.9E-33 | ||
| Pfam | 404 | 545 | 142 | 4.5E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity, acting on CH-OH group of donors | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0343000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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