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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0343300 |
| Transcript ID | LotjaGi3g1v0343300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT3G21215.3 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing; TrEMBL-Plants: tr|G7JVK2|G7JVK2_MEDTR RNA recognition motif; Found in the gene: LotjaGi3g1v0343300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71997712..72005014) extracted from Lotus japonicus Gifu genome v1.2.
GGGTTCTTAGGTGTTTCGTTGTTTTTTGATCCCCTTTGAGTATGATGTATATCATGTTCACCTCCTCTCATTTATATCAA TACAATTTGTGTTTTCGAAAAGAAAAAAAATAATTATATAAAATAGTGATAAAATGCCCCAACTTACATTTTACCTTCCA ATTTATCATCCCTTCAAAGGAGGAGTGAGATAGAAGTCGTGGTAGTGGAGTTTAGGACTTTGGTAGATTGGTAAATTGGG GTCGAGGCTTAGGGTTTCATCAGTACGAAACCAAGGGAAGGAGTGTGACTGTGTGAGTGACACAGAGAGATTGAATTCAT CCATGGCTGGCAACGGCATCCACCCATACCACCAACAGTGGCCTCCCGCAGCGGCCGTTCCTCCTCCAACCCCACCGCCT GCCGCTCCTCCCACCCTCTCTCCCGACGAGGCACTTTTCTCTCCTTCCATTTTCTTTCTCTTCATAATCAATCATGAATT CTGATTCTGAATTCTATGTTCATTCTTCGTTGTCCAGGTTCGAACGATATTCATCACTGGCCTCCCCGACGACGTGAAAG AGAGAGAGCTACAGAACCTGCTTCGATGGTTGCCTGGCTTCGAAGCTTCTCAGCTCAATTTCAAAGCCGATAAACCCATG GGTTTTGCTCTCTTCTCCAGTCCTCACCAAGCAATCGCCGCCAAAGATATTCTTCAGGACATGCTCTTCGATCCTGAAGC CAAGTCCGTCCTCCACACTGAAATGGCCAAGAAAAATCTCTTCATCAAAAGAGGTCACCTTCTTTCACCTGTTTATCATA GTGGGTTATTGTTCAATTGTAGATAGATGTAGAACTTATCTTGATTTTTTTTGTGTGGTAGGAATAGGGGCTGATGCAGC TGCTTTTGATCAGAGTAAACGGTTAAGGACTGCTGGGGATTATACACACACTGGTTATGTAACCCCATCTCCTTATCATC CTCCCCCGCCTCCCGTTTGGGGACCACATGGGTAAGAAATCCACCTTTATCTTCGAAATTACGAAAACTATGGCTGCAAT GTAAGGTTTTGAGTCTTAGCAATCACATCGTGACCTTAATTGTGGCCAATTTATTTGCAGTTTTCTACAATTTCAAGGGT TTCAGTGAAAACCTTGATCACAACATAAGAATATCCTTTTGCGTGCCCCTCCGTATATTTTAATAAGTTCAGTAAATTTG GTTTTTGTTTGTGAAAGTTTATTTGCTTTCGTGGTCCAGATACATGGCTCCACCACCACCTCCGTATGATCCGTATGCAG GCTATCCTGTTGCACCTGTACCGATGCCTGCTCCTGCTCCCATAGCGGCGCCTAGCAGCTATGTTCCAGTTCAGGTGAGA TTGGCTTAACAGAATAGATTAGACAGTGCTTCTATTTCAGTTGATTTCCCTTTCTATGATTATGTTATCACTACTTGTCT TGTAGTATTCAGCTCATATTAGTAAAATTTGGATAGGAACAAATTTAAGTATTCTTCTTTCTAAGCTCTATAGTGCTTGC TTATTTAACTTATCTTTTGGTTAGAGAGAGCCTGATCTCTGCTCTTATTTGTATATTGTTATAATTATGACTTAGTTTTT TAAATTGATGATGTTACTTATCTGAGACTATTACTGTGCCCATGACATGTCCTTTGGCTTTCACGGACATGAAAGATTTC TAAGATTGTATTTTAAAGGGAATATTAGAGGAGACATATTTGCCTTTGATTTTGATGGATGTGTTGTTGACTTAATTGTT ATATTCTGCTTATGTTCTGAATTATATTTAGAGATTACTATCACTATTTCTATATGAATGTTAAATGCATTTTTTTATTT GCATTCTATTGGTAAATATACAAAATGAGGGTAAATACTTTGTAGATAAAAGTATTATTAGGTCCCAGCTTTTTATTCCT TAAAGTGATATTGTGTGTTTTTGGCTTTTGCTAGACATGATTGCTGATATCAAAACTGTATTCTTTTCCTCCATAAAAAG CTTGCTCATAGATTACCCATGTTAGCCTAAGAGAAGGAACCTTAGGGAACCTCTAAATCTAATCTAGAATTGATAGCCAA CCTGTGAAACAAGATGAAGAAGGACTGTATTATTGAAAAATTGAACATGAAGATAGAGAACGAATTCTCTTTTCACCATA AAATTATCAAAAGTACAATGACCTCCCTAATCTGATTTCCCCTTATTTGTCTAACCAAAACCATCTAATTAACTCTTCCC TTCTGTTAGAAATAATAATATAAAACCGTTCATGTGGCCCTTACCCGACAACTTAAGCTTCTGGGACATTTGGTTATTTG ATATGGTATCAGAGCCTCTATGACTAAGCGGTTCAAAGTTCGATCCTTTCCGCCTCAAGTTCTTCTAATAAAAAGTTGAA TATCAGCACATGGTAGATGAGCATGTGCATTGTCCATGCTTCAAGCCCAAACGAGCTCTTGCGTGAGGGAACGTGTTAGA AATAATATTATAAATCCATTCATGTGGCTTTTGGGATAATTGGTTATTTGATGCCTTCGATCAAACACCCTACGTAACTA ATCGGCTAGCTATTAACAACATAAGACATGTCCTTATGTTGTCGTATTGATACATCTTAACAATACCTTTCTCCTCAAAA TCCACCTTACCCTTGAGGTGGGGATTCTTGTTTAAAAGTTATGCGCCATGCCTTTATGGCTTCTTGACCATACCCTTTTG CACACCCAAACCCTCCTGGCTGCGCGCCCTTCGCTAGGATTGTCACCTTCAATATTTTCTGGACATCGATGAGCTAATGC ATAGACCAAGCCACAATGAGAACATCCCTCTTCCCTACATGTCATAAATTCTTGGTAAGGCAATTGCTGCACACTCCCGT TCTGAAATCGAACTGATGCATTGGCCCTAATTGAGTTTGAGCCTACTGGTTGAGACTAGTGATTTTTGTGTTCGTTCACG TGTTATCTCGCTCTGCAACAGAAAATGACTTGCTACCCTCGTCAGTCGTCACTGTGTTACCCCTAAGATCGATGTGATGC ATTGGACCCTGAGACTTTGGTACATCCTTGTGGCTCTTAATTTTTCCTCTACGTCTCGGGCCAACTACATTGCTTTGTTA ATATCTCTTGGGTTGTGGGTTTGAACCTGATACCTCACTACCTGTTTATCCTGCCTAATAAGAAACCAATAACTGCTTGT TCGATGCCTACATGCCTCCAGTATTTGTGCAAGTGTGCCAACAAGCCTTCATACGCTCTCAAATATCATTCCACCAAGCT TCATTGACACATGGTGATGATGGTCAATCTTTTGTATACATTTCCCTGACTTTCTTCTCCAAAATGCTGTAACAAAGCTA GGAAGAAAGAATTCCATGACAAACTCGGGCTTCTCTTGTGCTAGAAACAGAACCAAAGCACCACCACTCCTCCATGCTAA TGAAGGTTAACCTCATTTTCTTATCCTCCTTGACACAATGTACCTAAAGAATTTCTCTGCTTGGACTATCCACCCCAAAG GGTCATTCCTATTGAAAATGGGTAGTTCGATCCGACCTTCATGGGATAATGGTTCTCTTTGTCACCCTTGTTCTCCATGC GTCTCTGTTTGCTGGCCTTAGTGGCTGTCCTATCACTTTTTTTCTGCATATTGCGTCACATGAGTCAAGGTTGCCTCAGA ATAACCCATACCGCCTTTGGCCATATCTGCAGCTTCTCTCCCCATAGTTTTGTCAATACAAGAAACCGAGTCTTCCAATT GTTAATGCGCGTCTTCACCGATCTGGCAGGTTGGACCAATTGTTAGAAGCCCAAAGAAAGAAGATGAAGAGCGGCAATGT TTTATTGAAAAGTTGAACAAGAATATGGTCTCCCAAAGGGTTTCCCCTTCTCCAAGGATTTCCATTTCACTCAAACTGTT AAAAAAGTACAGAATGCCCTCCCTGTCTGACTTCCCCTTTATCTAGCAAAACCATCTAATTAACTCTCCAGTCTAACAAA CTTCTAACCTAACTAATGGACTAGCATATTGACATAATAATACATGTCCTTATGTTGTCTTATTGATACATCCTAACAAG AATCATTATGTATGTCTTACATGATGAAAATAAGTCCCTATCTTGCTGCTATGTTTGTGTTGCCTATTTATCTGATGTTT TTGTATTTAATTTATCAATTCTGTTAGATTGATTTTACTTGTTTACTACAAACTTCCTATACATCCTTATAATTTGTTAT AAATGACAAGTTATGTAGTTTGCTTATCTTCTATTATCATGCACAGAACACAAAAGACAACCCTCCCTGCAACACCTTGT TTATTGGAAACTTGGGAGAGAACATTAACGAGGAAGAAGTGAAGGGCCTTTTCAGTGTGTAAGTACATCTTATCCGTAGA CCCTGGTTCTTATGTTCAGTTTATGTAGTATTTTCTTCGCAGTCTCAGGTATAGGAATAATATGTTAAACTTTGTGATGC AGACAACCTGGCTTTAAGCAAATGAAGATTTTAAGACAGGAGAGGCATACGGTTTGCTTCATTGAATTTGAAGTTAGTAA CCTTTTATAATATATAAGGCTTTTATAGTCCAATAGATTTTTTTCTGATGTATTATGTTTTTGGTTAATACCTGTTTACA TTGTTGTTAATATCACATAATTCATGCTTTTAATAGCAACGTTTGATGCGATCCTGCAAACTGGGGATTCTTATCATGCA TGAATCACAAATGATTTGGAATCATTCAATATATTCTTTAATTAGTGTTGTCCATATCATCAATGTGAATCACACAATTA AACGATTTATTAATTTTTTTTTCTTGCCTTTTTTTTACCATTTCTGGTCAACGAAATTAAGAAGTTCAGTAAGCTTAAAT TGTTAATGAAATGAAACTGATGGAGGCCATACTAAATGTACTCTATTTAATGGTTCCGTTCTGTTGTCAACTCTTCTGAA ACATGGACATGACACTGTCATTTGCTCATTTTGGCCCTTCACTCTGTTACTTGCTCACTCTTTGCATACCTGATTTGGAC CTATTTTTGTTGGCTTATGACATGGCATATCTTTATTCTTCGCAAGGCTTGTAGAGTTTTAGTCAAGTTGTTTTCTCTAT TCCTGATTTGGAGTTTATATTAAGCACTATTACATTATTTATATGATATATTTTAAGCATTAATACCTCATTTATAGGAT ATATATTAAGCATTAATACCTCATTTATATGAAATATTTTAGGCCATTTTTCGCCATGCTTTACTATTTCCAAAATTAGT ATTACAATTCATTGTTTGAGTTGGAAAATGACAATCTTCTCTTATGTTTTCCTGTAAAGTTTCCTCAGTCTGATATTTTA ATAAACTATTGCAGGATGTGAATAGTGCTGCCAATGTGCACCATACTCTGCAGGGTGCCGTTATTCCAAGTTCTGGTTCA GTTGGCATGCGGATACAATATCCTTTTTTGTATTTTAAGAAACTGGATGTTACTTTCCTGATTTAACCCCCTTACATGCC CTCACTCTAAATTTGACTGAGCATTTGGTTGTAGCCTTGTAGGACTCTTCATGGGAATTTTTTGCTTTAAATTCTTTCTT TGGTGGCGAATTACCATGCATGTTTTCTTTTGCCTTCACTGTACTGTGCATCAATGATACTAGAACCTTGGGTTTCTTTG AATTTTTTTCAATGGGGTTTCCTGCCATTTTTAACTGTTTTTCACACATATCCAACTATGTAATCTGATATGTACAGAGC TGCTAAATGTGTTAGTACTTAGGTAAAAACTACTTTGTAAGTTCATGGCTCTTGCTTCATATTTCTGGACTTGGTTATTT ATGCTACTCACTCGTCTGTCTGCGCATTCAAAAAGACACATACTAATTCAATTTGGCATAAAACTGCTAGTGATTTGTCC ATTTTGTTATGTGCTTGGAATTTTGTGTGCTTTTCTTGACTTCTTAGTAGATATTCGAAAAACCCATTTGGAAAAAGGAA AGATGGCAACATCATGCTTGCTGTTCCAAATGCCAATGGAGCTCCACCAACAATGGCTTATCAGTAGCTTGAAGGGGATG TACTCTGTTCTTTATGCTCCGACAAGTATTACATGATAGGATGCATCTTGCAGCTGTTACATGCATCCATTGATTATGAA GTCATCGCCATAAGCATCCGCCATTAGCATCCCTGCTCATGTGAATGATTGCACTGTGGCATCATATATACATAATACAT TTGGCAATGTTACACTAATTGGACATGCATTTCTTGGCAGCATATGTTGGTTCCTAGATTACTTCTGTAGTTGTTTAGAT GATGTTATTACCTTGTAGAACTGATGCATGGGTCTAAATTTTGTTTGAATTGTGTGCTTAATGGTCATTAACTCATTATA CTCTGTGTACATTGGCATTAGGAATGCTTATCCAAACAGGCATTATCTGTAGCCAATGCCCCAACTTTAGGCTCATTTAT TGCTTACTTGACATGACATCTTATGGTGACGCTTGCTTTGATTTCATGGCACTAACTTGACTAGGATCTGGAGAAATAAG GATATCACACCAATGGTCATGCTGCCAGCCTTACCACTATCATTAACATTGTCATTACACCACATTTTTAGCTCCATCCC TCATTTGAGTACTTGGCTGCACTTTAGATGAAGTATGAAGTTATAATTGTTGATTAGAAAATTAATGGTTAAAATTATGT AACATAGATGCCGTGTATAACAAATTAAGAAGTTTTTACAATTCATTGTTATTTTCTAATCAAAGTTTATAACTCTATTT TTGTCTTCTAAAGTACACTCCCTTATTTTAGAGGCGGTCAAACTTTTAACAGACCCCTGCCATTCATGACTCCATTTGAT CAGAGCATTGATGTTGATGCTTTGAAATTGAAGCTATTCAAAGATATTTAAAGGGATCTCGGGAGTTATATGTTGTCTGA TTTATACAGGATTTCAATACGACAAAGCTTCTTTTCCTAATGGGAGGACCATTACTGCTGCTGCTATATTTTTGCAGGTA AGTTTGGTTGCTTGGGTAAACTACTATCAGATCGGGTTGGAAATATTGTTTATCAAGCAAAGCAACTTTGAATTATAGGC GCCCTATGAGTTTCTCAGTAAACCGCCGACTTTATGATTGACTTGTCAATTTTGTGCAAGAATCACAATTTACTATGAAT GCAGAGGTTTTATTTATGTAGCAGATGTGACTGGTATAAGTCAAGAATAATCCAGATAATTTTAAGAGTGATGGTGGGAT GAACGAGTTTCAATATTTGAACA
CDS sequence (LotjaGi3g1v0343300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGCAACGGCATCCACCCATACCACCAACAGTGGCCTCCCGCAGCGGCCGTTCCTCCTCCAACCCCACCGCCTGC CGCTCCTCCCACCCTCTCTCCCGACGAGGTTCGAACGATATTCATCACTGGCCTCCCCGACGACGTGAAAGAGAGAGAGC TACAGAACCTGCTTCGATGGTTGCCTGGCTTCGAAGCTTCTCAGCTCAATTTCAAAGCCGATAAACCCATGGGTTTTGCT CTCTTCTCCAGTCCTCACCAAGCAATCGCCGCCAAAGATATTCTTCAGGACATGCTCTTCGATCCTGAAGCCAAGTCCGT CCTCCACACTGAAATGGCCAAGAAAAATCTCTTCATCAAAAGAGGAATAGGGGCTGATGCAGCTGCTTTTGATCAGAGTA AACGGTTAAGGACTGCTGGGGATTATACACACACTGGTTATGTAACCCCATCTCCTTATCATCCTCCCCCGCCTCCCGTT TGGGGACCACATGGATACATGGCTCCACCACCACCTCCGTATGATCCGTATGCAGGCTATCCTGTTGCACCTGTACCGAT GCCTGCTCCTGCTCCCATAGCGGCGCCTAGCAGCTATGTTCCAGTTCAGAACACAAAAGACAACCCTCCCTGCAACACCT TGTTTATTGGAAACTTGGGAGAGAACATTAACGAGGAAGAAGTGAAGGGCCTTTTCAGTGTACAACCTGGCTTTAAGCAA ATGAAGATTTTAAGACAGGAGAGGCATACGGTTTGCTTCATTGAATTTGAAGATGTGAATAGTGCTGCCAATGTGCACCA TACTCTGCAGGGTGCCGTTATTCCAAGTTCTGGTTCAGTTGGCATGCGGATACACCATTTGGAAAAAGGAAAGATGGCAA CATCATGCTTGCTGTTCCAAATGCCAATGGAGCTCCACCAACAATGGCTTATCAGTAGCTTGAAGGGGATGTACTCTGTT CTTTATGCTCCGACAAGTATTACATGA
Protein sequence (LotjaGi3g1v0343300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNGIHPYHQQWPPAAAVPPPTPPPAAPPTLSPDEVRTIFITGLPDDVKERELQNLLRWLPGFEASQLNFKADKPMGFA LFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKRGIGADAAAFDQSKRLRTAGDYTHTGYVTPSPYHPPPPPV WGPHGYMAPPPPPYDPYAGYPVAPVPMPAPAPIAAPSSYVPVQNTKDNPPCNTLFIGNLGENINEEEVKGLFSVQPGFKQ MKILRQERHTVCFIEFEDVNSAANVHHTLQGAVIPSSGSVGMRIHHLEKGKMATSCLLFQMPMELHQQWLISSLKGMYSV LYAPTSIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 291 | 291 | 1.6E-162 | – | |
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 1 | 291 | 291 | 1.6E-162 | – | |
| MobiDBLite | 14 | 32 | 19 | - | – | |
| Gene3D | 32 | 118 | 87 | 2.7E-17 | ||
| SUPERFAMILY | 34 | 274 | 241 | 8.97E-19 | ||
| CDD | 38 | 111 | 74 | 5.63065E-34 | – | |
| ProSiteProfiles | 38 | 115 | 78 | 8.603 | ||
| SMART | 39 | 109 | 71 | 0.034 | ||
| Gene3D | 199 | 286 | 88 | 1.3E-19 | ||
| CDD | 210 | 284 | 75 | 1.18046E-39 | – | |
| ProSiteProfiles | 212 | 289 | 78 | 10.616 | ||
| SMART | 213 | 285 | 73 | 4.2E-7 | ||
| Pfam | 214 | 275 | 62 | 1.9E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0343300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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