Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0343300 |
| Transcript ID | LotjaGi3g1v0343300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT3G21215.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1; TrEMBL-Plants: tr|I3T1I3|I3T1I3_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0343300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71997883..72005283) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAAAGGAGGAGTGAGATAGAAGTCGTGGTAGTGGAGTTTAGGACTTTGGTAGATTGGTAAATTGGGGTCGAGGCTTA GGGTTTCATCAGTACGAAACCAAGGGAAGGAGTGTGACTGTGTGAGTGACACAGAGAGATTGAATTCATCCATGGCTGGC AACGGCATCCACCCATACCACCAACAGTGGCCTCCCGCAGCGGCCGTTCCTCCTCCAACCCCACCGCCTGCCGCTCCTCC CACCCTCTCTCCCGACGAGGCACTTTTCTCTCCTTCCATTTTCTTTCTCTTCATAATCAATCATGAATTCTGATTCTGAA TTCTATGTTCATTCTTCGTTGTCCAGGTTCGAACGATATTCATCACTGGCCTCCCCGACGACGTGAAAGAGAGAGAGCTA CAGAACCTGCTTCGATGGTTGCCTGGCTTCGAAGCTTCTCAGCTCAATTTCAAAGCCGATAAACCCATGGGTTTTGCTCT CTTCTCCAGTCCTCACCAAGCAATCGCCGCCAAAGATATTCTTCAGGACATGCTCTTCGATCCTGAAGCCAAGTCCGTCC TCCACACTGAAATGGCCAAGAAAAATCTCTTCATCAAAAGAGGTCACCTTCTTTCACCTGTTTATCATAGTGGGTTATTG TTCAATTGTAGATAGATGTAGAACTTATCTTGATTTTTTTTGTGTGGTAGGAATAGGGGCTGATGCAGCTGCTTTTGATC AGAGTAAACGGTTAAGGACTGCTGGGGATTATACACACACTGGTTATGTAACCCCATCTCCTTATCATCCTCCCCCGCCT CCCGTTTGGGGACCACATGGGTAAGAAATCCACCTTTATCTTCGAAATTACGAAAACTATGGCTGCAATGTAAGGTTTTG AGTCTTAGCAATCACATCGTGACCTTAATTGTGGCCAATTTATTTGCAGTTTTCTACAATTTCAAGGGTTTCAGTGAAAA CCTTGATCACAACATAAGAATATCCTTTTGCGTGCCCCTCCGTATATTTTAATAAGTTCAGTAAATTTGGTTTTTGTTTG TGAAAGTTTATTTGCTTTCGTGGTCCAGATACATGGCTCCACCACCACCTCCGTATGATCCGTATGCAGGCTATCCTGTT GCACCTGTACCGATGCCTGCTCCTGCTCCCATAGCGGCGCCTAGCAGCTATGTTCCAGTTCAGGTGAGATTGGCTTAACA GAATAGATTAGACAGTGCTTCTATTTCAGTTGATTTCCCTTTCTATGATTATGTTATCACTACTTGTCTTGTAGTATTCA GCTCATATTAGTAAAATTTGGATAGGAACAAATTTAAGTATTCTTCTTTCTAAGCTCTATAGTGCTTGCTTATTTAACTT ATCTTTTGGTTAGAGAGAGCCTGATCTCTGCTCTTATTTGTATATTGTTATAATTATGACTTAGTTTTTTAAATTGATGA TGTTACTTATCTGAGACTATTACTGTGCCCATGACATGTCCTTTGGCTTTCACGGACATGAAAGATTTCTAAGATTGTAT TTTAAAGGGAATATTAGAGGAGACATATTTGCCTTTGATTTTGATGGATGTGTTGTTGACTTAATTGTTATATTCTGCTT ATGTTCTGAATTATATTTAGAGATTACTATCACTATTTCTATATGAATGTTAAATGCATTTTTTTATTTGCATTCTATTG GTAAATATACAAAATGAGGGTAAATACTTTGTAGATAAAAGTATTATTAGGTCCCAGCTTTTTATTCCTTAAAGTGATAT TGTGTGTTTTTGGCTTTTGCTAGACATGATTGCTGATATCAAAACTGTATTCTTTTCCTCCATAAAAAGCTTGCTCATAG ATTACCCATGTTAGCCTAAGAGAAGGAACCTTAGGGAACCTCTAAATCTAATCTAGAATTGATAGCCAACCTGTGAAACA AGATGAAGAAGGACTGTATTATTGAAAAATTGAACATGAAGATAGAGAACGAATTCTCTTTTCACCATAAAATTATCAAA AGTACAATGACCTCCCTAATCTGATTTCCCCTTATTTGTCTAACCAAAACCATCTAATTAACTCTTCCCTTCTGTTAGAA ATAATAATATAAAACCGTTCATGTGGCCCTTACCCGACAACTTAAGCTTCTGGGACATTTGGTTATTTGATATGGTATCA GAGCCTCTATGACTAAGCGGTTCAAAGTTCGATCCTTTCCGCCTCAAGTTCTTCTAATAAAAAGTTGAATATCAGCACAT GGTAGATGAGCATGTGCATTGTCCATGCTTCAAGCCCAAACGAGCTCTTGCGTGAGGGAACGTGTTAGAAATAATATTAT AAATCCATTCATGTGGCTTTTGGGATAATTGGTTATTTGATGCCTTCGATCAAACACCCTACGTAACTAATCGGCTAGCT ATTAACAACATAAGACATGTCCTTATGTTGTCGTATTGATACATCTTAACAATACCTTTCTCCTCAAAATCCACCTTACC CTTGAGGTGGGGATTCTTGTTTAAAAGTTATGCGCCATGCCTTTATGGCTTCTTGACCATACCCTTTTGCACACCCAAAC CCTCCTGGCTGCGCGCCCTTCGCTAGGATTGTCACCTTCAATATTTTCTGGACATCGATGAGCTAATGCATAGACCAAGC CACAATGAGAACATCCCTCTTCCCTACATGTCATAAATTCTTGGTAAGGCAATTGCTGCACACTCCCGTTCTGAAATCGA ACTGATGCATTGGCCCTAATTGAGTTTGAGCCTACTGGTTGAGACTAGTGATTTTTGTGTTCGTTCACGTGTTATCTCGC TCTGCAACAGAAAATGACTTGCTACCCTCGTCAGTCGTCACTGTGTTACCCCTAAGATCGATGTGATGCATTGGACCCTG AGACTTTGGTACATCCTTGTGGCTCTTAATTTTTCCTCTACGTCTCGGGCCAACTACATTGCTTTGTTAATATCTCTTGG GTTGTGGGTTTGAACCTGATACCTCACTACCTGTTTATCCTGCCTAATAAGAAACCAATAACTGCTTGTTCGATGCCTAC ATGCCTCCAGTATTTGTGCAAGTGTGCCAACAAGCCTTCATACGCTCTCAAATATCATTCCACCAAGCTTCATTGACACA TGGTGATGATGGTCAATCTTTTGTATACATTTCCCTGACTTTCTTCTCCAAAATGCTGTAACAAAGCTAGGAAGAAAGAA TTCCATGACAAACTCGGGCTTCTCTTGTGCTAGAAACAGAACCAAAGCACCACCACTCCTCCATGCTAATGAAGGTTAAC CTCATTTTCTTATCCTCCTTGACACAATGTACCTAAAGAATTTCTCTGCTTGGACTATCCACCCCAAAGGGTCATTCCTA TTGAAAATGGGTAGTTCGATCCGACCTTCATGGGATAATGGTTCTCTTTGTCACCCTTGTTCTCCATGCGTCTCTGTTTG CTGGCCTTAGTGGCTGTCCTATCACTTTTTTTCTGCATATTGCGTCACATGAGTCAAGGTTGCCTCAGAATAACCCATAC CGCCTTTGGCCATATCTGCAGCTTCTCTCCCCATAGTTTTGTCAATACAAGAAACCGAGTCTTCCAATTGTTAATGCGCG TCTTCACCGATCTGGCAGGTTGGACCAATTGTTAGAAGCCCAAAGAAAGAAGATGAAGAGCGGCAATGTTTTATTGAAAA GTTGAACAAGAATATGGTCTCCCAAAGGGTTTCCCCTTCTCCAAGGATTTCCATTTCACTCAAACTGTTAAAAAAGTACA GAATGCCCTCCCTGTCTGACTTCCCCTTTATCTAGCAAAACCATCTAATTAACTCTCCAGTCTAACAAACTTCTAACCTA ACTAATGGACTAGCATATTGACATAATAATACATGTCCTTATGTTGTCTTATTGATACATCCTAACAAGAATCATTATGT ATGTCTTACATGATGAAAATAAGTCCCTATCTTGCTGCTATGTTTGTGTTGCCTATTTATCTGATGTTTTTGTATTTAAT TTATCAATTCTGTTAGATTGATTTTACTTGTTTACTACAAACTTCCTATACATCCTTATAATTTGTTATAAATGACAAGT TATGTAGTTTGCTTATCTTCTATTATCATGCACAGAACACAAAAGACAACCCTCCCTGCAACACCTTGTTTATTGGAAAC TTGGGAGAGAACATTAACGAGGAAGAAGTGAAGGGCCTTTTCAGTGTGTAAGTACATCTTATCCGTAGACCCTGGTTCTT ATGTTCAGTTTATGTAGTATTTTCTTCGCAGTCTCAGGTATAGGAATAATATGTTAAACTTTGTGATGCAGACAACCTGG CTTTAAGCAAATGAAGATTTTAAGACAGGAGAGGCATACGGTTTGCTTCATTGAATTTGAAGTTAGTAACCTTTTATAAT ATATAAGGCTTTTATAGTCCAATAGATTTTTTTCTGATGTATTATGTTTTTGGTTAATACCTGTTTACATTGTTGTTAAT ATCACATAATTCATGCTTTTAATAGCAACGTTTGATGCGATCCTGCAAACTGGGGATTCTTATCATGCATGAATCACAAA TGATTTGGAATCATTCAATATATTCTTTAATTAGTGTTGTCCATATCATCAATGTGAATCACACAATTAAACGATTTATT AATTTTTTTTTCTTGCCTTTTTTTTACCATTTCTGGTCAACGAAATTAAGAAGTTCAGTAAGCTTAAATTGTTAATGAAA TGAAACTGATGGAGGCCATACTAAATGTACTCTATTTAATGGTTCCGTTCTGTTGTCAACTCTTCTGAAACATGGACATG ACACTGTCATTTGCTCATTTTGGCCCTTCACTCTGTTACTTGCTCACTCTTTGCATACCTGATTTGGACCTATTTTTGTT GGCTTATGACATGGCATATCTTTATTCTTCGCAAGGCTTGTAGAGTTTTAGTCAAGTTGTTTTCTCTATTCCTGATTTGG AGTTTATATTAAGCACTATTACATTATTTATATGATATATTTTAAGCATTAATACCTCATTTATAGGATATATATTAAGC ATTAATACCTCATTTATATGAAATATTTTAGGCCATTTTTCGCCATGCTTTACTATTTCCAAAATTAGTATTACAATTCA TTGTTTGAGTTGGAAAATGACAATCTTCTCTTATGTTTTCCTGTAAAGTTTCCTCAGTCTGATATTTTAATAAACTATTG CAGGATGTGAATAGTGCTGCCAATGTGCACCATACTCTGCAGGGTGCCGTTATTCCAAGTTCTGGTTCAGTTGGCATGCG GATACAATATCCTTTTTTGTATTTTAAGAAACTGGATGTTACTTTCCTGATTTAACCCCCTTACATGCCCTCACTCTAAA TTTGACTGAGCATTTGGTTGTAGCCTTGTAGGACTCTTCATGGGAATTTTTTGCTTTAAATTCTTTCTTTGGTGGCGAAT TACCATGCATGTTTTCTTTTGCCTTCACTGTACTGTGCATCAATGATACTAGAACCTTGGGTTTCTTTGAATTTTTTTCA ATGGGGTTTCCTGCCATTTTTAACTGTTTTTCACACATATCCAACTATGTAATCTGATATGTACAGAGCTGCTAAATGTG TTAGTACTTAGGTAAAAACTACTTTGTAAGTTCATGGCTCTTGCTTCATATTTCTGGACTTGGTTATTTATGCTACTCAC TCGTCTGTCTGCGCATTCAAAAAGACACATACTAATTCAATTTGGCATAAAACTGCTAGTGATTTGTCCATTTTGTTATG TGCTTGGAATTTTGTGTGCTTTTCTTGACTTCTTAGTAGATATTCGAAAAACCCATTTGGAAAAAGGAAAGATGGCAACA TCATGCTTGCTGTTCCAAATGCCAATGGAGCTCCACCAACAATGGCTTATCAGTAGCTTGAAGGGGATGTACTCTGTTCT TTATGCTCCGACAAGTATTACATGATAGGATGCATCTTGCAGCTGTTACATGCATCCATTGATTATGAAGTCATCGCCAT AAGCATCCGCCATTAGCATCCCTGCTCATGTGAATGATTGCACTGTGGCATCATATATACATAATACATTTGGCAATGTT ACACTAATTGGACATGCATTTCTTGGCAGCATATGTTGGTTCCTAGATTACTTCTGTAGTTGTTTAGATGATGTTATTAC CTTGTAGAACTGATGCATGGGTCTAAATTTTGTTTGAATTGTGTGCTTAATGGTCATTAACTCATTATACTCTGTGTACA TTGGCATTAGGAATGCTTATCCAAACAGGCATTATCTGTAGCCAATGCCCCAACTTTAGGCTCATTTATTGCTTACTTGA CATGACATCTTATGGTGACGCTTGCTTTGATTTCATGGCACTAACTTGACTAGGATCTGGAGAAATAAGGATATCACACC AATGGTCATGCTGCCAGCCTTACCACTATCATTAACATTGTCATTACACCACATTTTTAGCTCCATCCCTCATTTGAGTA CTTGGCTGCACTTTAGATGAAGTATGAAGTTATAATTGTTGATTAGAAAATTAATGGTTAAAATTATGTAACATAGATGC CGTGTATAACAAATTAAGAAGTTTTTACAATTCATTGTTATTTTCTAATCAAAGTTTATAACTCTATTTTTGTCTTCTAA AGTACACTCCCTTATTTTAGAGGCGGTCAAACTTTTAACAGACCCCTGCCATTCATGACTCCATTTGATCAGAGCATTGA TGTTGATGCTTTGAAATTGAAGCTATTCAAAGATATTTAAAGGGATCTCGGGAGTTATATGTTGTCTGATTTATACAGGA TTTCAATACGACAAAGCTTCTTTTCCTAATGGGAGGACCATTACTGCTGCTGCTATATTTTTGCAGGTAAGTTTGGTTGC TTGGGTAAACTACTATCAGATCGGGTTGGAAATATTGTTTATCAAGCAAAGCAACTTTGAATTATAGGCGCCCTATGAGT TTCTCAGTAAACCGCCGACTTTATGATTGACTTGTCAATTTTGTGCAAGAATCACAATTTACTATGAATGCAGAGGTTTT ATTTATGTAGCAGATGTGACTGGTATAAGTCAAGAATAATCCAGATAATTTTAAGAGTGATGGTGGGATGAACGAGTTTC AATATTTGAACATTTCGCTGTTAATCTTTAGCTCATACTCATGTTAAGAATGAGTTTTTCGTGCCGAGTAAAACTTCATA TCTAGATTCTGACACTTCAGGCATTAACTGTCTGGCTTGATTTGAGTAATAAATTCTGACATGTTATAGGCATAGCTGAG TGGATTGAATTCTTAGCTTTTTGCTCTACCTTTGAACTGTGTTTCCTGGTATAACTGATTATACCGAGATGCTATTAACA TTCGTCCCCTGTATGGTTGTTGTTGTGGTAATCTAATTTCG
CDS sequence (LotjaGi3g1v0343300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGCAACGGCATCCACCCATACCACCAACAGTGGCCTCCCGCAGCGGCCGTTCCTCCTCCAACCCCACCGCCTGC CGCTCCTCCCACCCTCTCTCCCGACGAGGTTCGAACGATATTCATCACTGGCCTCCCCGACGACGTGAAAGAGAGAGAGC TACAGAACCTGCTTCGATGGTTGCCTGGCTTCGAAGCTTCTCAGCTCAATTTCAAAGCCGATAAACCCATGGGTTTTGCT CTCTTCTCCAGTCCTCACCAAGCAATCGCCGCCAAAGATATTCTTCAGGACATGCTCTTCGATCCTGAAGCCAAGTCCGT CCTCCACACTGAAATGGCCAAGAAAAATCTCTTCATCAAAAGAGGAATAGGGGCTGATGCAGCTGCTTTTGATCAGAGTA AACGGTTAAGGACTGCTGGGGATTATACACACACTGGTTATGTAACCCCATCTCCTTATCATCCTCCCCCGCCTCCCGTT TGGGGACCACATGGATACATGGCTCCACCACCACCTCCGTATGATCCGTATGCAGGCTATCCTGTTGCACCTGTACCGAT GCCTGCTCCTGCTCCCATAGCGGCGCCTAGCAGCTATGTTCCAGTTCAGAACACAAAAGACAACCCTCCCTGCAACACCT TGTTTATTGGAAACTTGGGAGAGAACATTAACGAGGAAGAAGTGAAGGGCCTTTTCAGTGTACAACCTGGCTTTAAGCAA ATGAAGATTTTAAGACAGGAGAGGCATACGGTTTGCTTCATTGAATTTGAAGATGTGAATAGTGCTGCCAATGTGCACCA TACTCTGCAGGGTGCCGTTATTCCAAGTTCTGGTTCAGTTGGCATGCGGATACAATATTCGAAAAACCCATTTGGAAAAA GGAAAGATGGCAACATCATGCTTGCTGTTCCAAATGCCAATGGAGCTCCACCAACAATGGCTTATCAGTAG
Protein sequence (LotjaGi3g1v0343300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNGIHPYHQQWPPAAAVPPPTPPPAAPPTLSPDEVRTIFITGLPDDVKERELQNLLRWLPGFEASQLNFKADKPMGFA LFSSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFIKRGIGADAAAFDQSKRLRTAGDYTHTGYVTPSPYHPPPPPV WGPHGYMAPPPPPYDPYAGYPVAPVPMPAPAPIAAPSSYVPVQNTKDNPPCNTLFIGNLGENINEEEVKGLFSVQPGFKQ MKILRQERHTVCFIEFEDVNSAANVHHTLQGAVIPSSGSVGMRIQYSKNPFGKRKDGNIMLAVPNANGAPPTMAYQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 1 | 296 | 296 | 1.4E-166 | – | |
| PANTHER | 1 | 296 | 296 | 1.4E-166 | – | |
| MobiDBLite | 14 | 32 | 19 | - | – | |
| Gene3D | 32 | 118 | 87 | 2.6E-17 | ||
| SUPERFAMILY | 34 | 274 | 241 | 8.88E-19 | ||
| ProSiteProfiles | 38 | 115 | 78 | 8.603 | ||
| CDD | 38 | 111 | 74 | 4.32722E-34 | – | |
| SMART | 39 | 109 | 71 | 0.034 | ||
| Gene3D | 199 | 289 | 91 | 2.9E-21 | ||
| CDD | 210 | 288 | 79 | 3.00944E-43 | – | |
| ProSiteProfiles | 212 | 289 | 78 | 11.571 | ||
| SMART | 213 | 285 | 73 | 2.4E-7 | ||
| Pfam | 214 | 275 | 62 | 1.8E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0343300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…