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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0344800 |
Transcript ID | LotjaGi3g1v0344800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | O-fucosyltransferase family protein; TAIR: AT3G21190.1 O-fucosyltransferase family protein; Swiss-Prot: sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910; TrEMBL-Plants: tr|A0A151RP93|A0A151RP93_CAJCA DUF246 domain-containing protein family; Found in the gene: LotjaGi3g1v0344800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72224170..72228533) extracted from Lotus japonicus Gifu genome v1.2.
AAAATAGTAGTAATTCATAAAAAGAATGATGAATGCAAAGTTAAAGTCTAAATCCAGGTTTATAGTATTATAGGAAGCAC ATCGTTGTCATCAGAAGTGTCGGTAGTAAACTGTTGAAATAAAACCCTGTTCCTGTTTGTCTCTCACAACACCAACTTGG GTTTTGCTATACTATAATACTGTACTGTGTTCCCCACCTCCATGTGCTCTTAAAAGATTCCATTTTTATGCTTGATTCAA TACCCCATTTTCATTTTGCTTCTAATCTCTACTTCTTCTCAGCTCCATCAACAAACAACATTGGTGACTGAGTGAGTGAG TGAAATCTTTGCCAAAACCAGAGATGGGTGTGGATTTGAGGCAAATTGTGGCCGGTATTCTCACTATCACTATGTTCGTA ATGCTTATCCATATGATCAAAAGGGACAATTTTGATGCAGTTGAAGTAAGTCTATCTCCCATCAAAAGATGCAATCTTTC ACTGTTTTTAATTTGAAGTTTTCATTTTTCACTCTCTGAATTTCTGAAAGTCTCAATTTTTATCTCTTTGTGCTTGTTTT GTTGAATTGATTAGGAGGTTGTATTGCAGAGGTAGCAATATCAATTTACTGTGAAATTTAACTGGGGATCTGAATTGGTG TAGAAATTAAATAAATTTCAAGGATTAAACTAAGCCCATTTTTGTAGATATGGTTGTAATGCTTGCAGAGATGATAGATC CGTTGTTCAAATACAAGGAGATGGTTTTTCAATGAAATAGTGATCAGAAAGCCCCCTTTTGGATTTTGGTAACTTTATGC TCAACAATTGTTGTGAAATCATTGATTGGTTTGTGGGAAGACATGAATTAAGCAAATTGAATCTTCAATTTCTGCACTAG GATGTCCTTCCAGGCTAGTTGATTAGGCACTACCTCAAAATCCATTTCTATATCTTCATGGCCAGGCCTACTTCCCCTGA GTTATTTTTAATGATAAAAATAGGGGGGGGGGGGGAGGGGGGCTCATTTCAGTGCATTTCCTAGTGCTTTTTCAATGCAG ATTTATTTTGACCATTACTCTTGTAATTTTTCAATATAGGTGTGATTTATGACTTATTTGTTTCAATTTTCTTTCTTTAC AAGGATAAACTTCAAGGAACAACAGAGGAAGTCATCTATGAAAATGTAAAGCTTGATACTACTCATGAGAGAAAGAATAT AGGGCTTTGGAAGGGAGATGCAGACGAATTAAAACCATGTTGGGCTAAGCCAGTTGGAGGTAAAATTTGATTTCTAAAGA CTAAACTGCCAAGGATACTTTGTCATGTACTAAACATATTTGCACGCACTCAATCTTTTTGTATTTATTAATTCATGTTT TGGTAATGGCTGACAGATGACGTGGAGCGGACTGAGGGGTTTGTTATATTTTCATTAACCAATGGCCCAGAGTATCATAT ATCTCAGGTAAATGAATCAACAATTTGGCTTGACATATTGAGAAGTTGCTTATATATCAGCTATGCATCAATACTTGCAG CTGTATCTCAAACATACCAATATTTTCCCTTCAATTATTTCCTCTCCTCCCCCTCCAAAACGAAACAGTACCATTATTGT GTATTTTTTCAGCAAGAAATGGAGAAAGATTTTTTGTCATTAATCACCATATGATACTGATTATACTTATGATAAGATTT ATAGTTTTTTCTACTCTTTTACTATATTTATGTGCTCCTTTAGCGAGTGTGTTGTTGTGAAATTTGAAGTTATTTCGTAT TTGCATTCTGTATTTAGTTTACTTTCCTTTCTGTTTCTATTTGCTTTGGAGGGTTTCATGTCCTCCTGTTCTGTTTTTCT CTGTCTAAATCTTCTTTCATCACCAATGTACTTCTTCTCCAGATAGCAGATGCGGTGATTGTTGCTAGAAGTCTTGGGGC AACACTTGTTATCCCTGATATCAGGGGAAGTCAACCTGGTGAAAAGAGGTTAGTGCTGACCATAAAAGATTCAGGGTATA AGATGTGTATAAAAACGGATAATGTTGATGTTAATATCTTCTCCTGTTATAACCTCTGTTGTAGCAGAAGAAAATTTTGT GGGATGTGAAGGAGAAATGTCGCTTCTCTGTTTTCAAAGAAGTAGCCATACCATTGATGTTAATAGCTTCTCATGTTATG ACCTCTGTTGATTTGTTATTTGAGGTCCCATTATTCATATTGCAAGCTTGTTTTGGAAGTAGCACAGTTTGAAAATGCTT TGTTCTGATTACAATTTACAGTTCACAGTTGAATTCAATTTGAAACCAGTGTAATTTACTTTTCTACATACACACTTGCG TGTGCCTAAGATAATTTATGTCTCAGGAACTTTGAAGACATTTATGATGTTGACGTGTTCATGAAAAGCATGGACGGAGT GGTCAGAGTGGCAAAGGAACTTCCTGCTCATGTGTCGTCACAGAAAATTGCGGCTGTGAAGGTCCCTAGTCGGGTTTCTG AAGACTACATTGCTAAACATGTTGAACCAATTTATAGATCAAAGGGAAATATAAGGCTTGCCACTTACTTCCCTTCAATA AACATGAGAAAGGCAGAGAAGAAAGGTGACACTGATTCAATAGCATGCTTAGCAATGTATGGAAGTTTAGAGTTGCAGCC AGACATGCGCGACCTTGTTGACTCCATGGTTGAAAGGCTTAGAACTTTAAGCCGCAAGTCAGAAGGCCAATTTATAGCCG TGGATTTGAGAGTTGAGATGTTGGATAAGAAGGGTTGCCAAGACAGCGGAGAGAAGAGCTGCTTCAATGCCCAAGAGGTT GCAATGTTTTTGAGGAAAGTTGGGTTTGAAAAGGACACTACAGTTTATGTGACACAATCAAGATGGGATAGCCGCCTCGA CTCTCTTAAGGATTTGTTCCCTAAAACATACACAAAGGTCAGATTTTTGTTCTTATTTATCACCCCTCTCTTACTCTCTT TTTCATAAATACAACCTTCTTTCACTTTTTTTAATCCTCGAAGTATAAAATCTCTCATTTCCTCTGATCAATGTTGCAGG AAGCCATTGTGCCTGCGGATAAGAAGAGCAAGTTCCTAGATTCTCAAGATTCTGAGTTGGAGAAAGTGATTGACTTTTAC ATTAGTTCTGAGAGCGATGTTTTCGTGCCAGCAATTTCAGGTCTGCTGTATGCAAATGTAGCGGGTAAGAGAATTGGTTC TGGTAAGACCCAGATATTGGTTCCGGCTGATATTCCAGATTCATCTGCTTCTGCCTCCAGTTTCTTGTCCTCCTATATCT CCAAAAAGAACCATTTTGCCTATTCTTGTTTTTGCTAGTTCTCAGTGAAGACAATACAAAGCATCTAGATCCTGTAGCAA ATGTTGTGTGGCCAAGGTCTTGTTGCTTATGAAGCACCCATTTGGGAGTCTCAGTGTTAAGGGCCTAAGGCTTTGTGTTT TTAAATTTATAGTATGAACGTTCAAGGAAAAATGAAGAGTGAGATGTTTACTGTCATTTAACATGTCTACAAGGCTTTCT CTTCACATATTTGATGCTGCATTCATTGGGTATTTAACTTTTTATAGCATATCTGTAGCATTGTTGCCTTCAAATTGTCC TATAATCCACAACCTACTTTTTATTAAGATTTATGTAATAATAAGTAGTTACCAGAAATTAAATTCCAGGAGGTCTTAAT AGCAACTCACTCTGATACTCTTTGCCTGCGCCCTGCTGCCTATCACCCTCCGCCGCCACCACCACTTTTCGGCACCCTCT ACCATGTCAATCTGTCATTTGTCACTCTCTATCTCCAACACCATATGATAGAAGCTTACTTATATCACATTCAATCCTTG TCAGTCACTAGTGTGCATAGATATGATAAGAGGTTATGTGCTCATCCTATTTATTGTTCTCTGACCCTCTTACCCGGCCC TATTTGTCATATCTCTTAACCAACAAACAAGACACGTTGATCTAAGTCATCCAACCAAACACAAAACACGCATGATTATG TAAACACAACCTATGTCTGTACTGTGTAAACACAAATAACGTGGCTTTGTTTTTTTTTTTTTTTTTTTACATCGAAAATA TAAATTACACTATTAGGGATCGATCCCTGAACTTTTCCCTCCCAACCCATATGTCTCATATCTCTTACCACACTTGGCTT TGTTATTTACCTCATTGTTTTCTTTATGTTAATGTATCAAGTATCAACTATTTTTTATTTTTTTTGGTACATCGGAAAGA TAAACTATAATCTCATTCATGGTTGATTGTTGGACCTCCCCCTCCCCATTCATGTTTATCCGCTCTTACCACTTGAACTA TCACATACTCTTATCTATTAATGAGTCATGACATTTGAACGTGG
CDS sequence (LotjaGi3g1v0344800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTGGATTTGAGGCAAATTGTGGCCGGTATTCTCACTATCACTATGTTCGTAATGCTTATCCATATGATCAAAAG GGACAATTTTGATGCAGTTGAAGATAAACTTCAAGGAACAACAGAGGAAGTCATCTATGAAAATGTAAAGCTTGATACTA CTCATGAGAGAAAGAATATAGGGCTTTGGAAGGGAGATGCAGACGAATTAAAACCATGTTGGGCTAAGCCAGTTGGAGAT GACGTGGAGCGGACTGAGGGGTTTGTTATATTTTCATTAACCAATGGCCCAGAGTATCATATATCTCAGATAGCAGATGC GGTGATTGTTGCTAGAAGTCTTGGGGCAACACTTGTTATCCCTGATATCAGGGGAAGTCAACCTGGTGAAAAGAGGAACT TTGAAGACATTTATGATGTTGACGTGTTCATGAAAAGCATGGACGGAGTGGTCAGAGTGGCAAAGGAACTTCCTGCTCAT GTGTCGTCACAGAAAATTGCGGCTGTGAAGGTCCCTAGTCGGGTTTCTGAAGACTACATTGCTAAACATGTTGAACCAAT TTATAGATCAAAGGGAAATATAAGGCTTGCCACTTACTTCCCTTCAATAAACATGAGAAAGGCAGAGAAGAAAGGTGACA CTGATTCAATAGCATGCTTAGCAATGTATGGAAGTTTAGAGTTGCAGCCAGACATGCGCGACCTTGTTGACTCCATGGTT GAAAGGCTTAGAACTTTAAGCCGCAAGTCAGAAGGCCAATTTATAGCCGTGGATTTGAGAGTTGAGATGTTGGATAAGAA GGGTTGCCAAGACAGCGGAGAGAAGAGCTGCTTCAATGCCCAAGAGGTTGCAATGTTTTTGAGGAAAGTTGGGTTTGAAA AGGACACTACAGTTTATGTGACACAATCAAGATGGGATAGCCGCCTCGACTCTCTTAAGGATTTGTTCCCTAAAACATAC ACAAAGGAAGCCATTGTGCCTGCGGATAAGAAGAGCAAGTTCCTAGATTCTCAAGATTCTGAGTTGGAGAAAGTGATTGA CTTTTACATTAGTTCTGAGAGCGATGTTTTCGTGCCAGCAATTTCAGGTCTGCTGTATGCAAATGTAGCGGGTAAGAGAA TTGGTTCTGGTAAGACCCAGATATTGGTTCCGGCTGATATTCCAGATTCATCTGCTTCTGCCTCCAGTTTCTTGTCCTCC TATATCTCCAAAAAGAACCATTTTGCCTATTCTTGTTTTTGCTAG
Protein sequence (LotjaGi3g1v0344800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVDLRQIVAGILTITMFVMLIHMIKRDNFDAVEDKLQGTTEEVIYENVKLDTTHERKNIGLWKGDADELKPCWAKPVGD DVERTEGFVIFSLTNGPEYHISQIADAVIVARSLGATLVIPDIRGSQPGEKRNFEDIYDVDVFMKSMDGVVRVAKELPAH VSSQKIAAVKVPSRVSEDYIAKHVEPIYRSKGNIRLATYFPSINMRKAEKKGDTDSIACLAMYGSLELQPDMRDLVDSMV ERLRTLSRKSEGQFIAVDLRVEMLDKKGCQDSGEKSCFNAQEVAMFLRKVGFEKDTTVYVTQSRWDSRLDSLKDLFPKTY TKEAIVPADKKSKFLDSQDSELEKVIDFYISSESDVFVPAISGLLYANVAGKRIGSGKTQILVPADIPDSSASASSFLSS YISKKNHFAYSCFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 6 | 6 | - | – | |
PANTHER | 1 | 414 | 414 | 4.7E-184 | – | |
PANTHER | 1 | 414 | 414 | 4.7E-184 | – | |
PIRSF | 2 | 278 | 277 | 1.4E-51 | ||
Phobius | 7 | 25 | 19 | - | – | |
TMHMM | 7 | 25 | 19 | - | – | |
Phobius | 26 | 414 | 389 | - | – | |
CDD | 88 | 381 | 294 | 1.12546E-113 | ||
Pfam | 102 | 373 | 272 | 4.2E-26 | ||
Gene3D | 225 | 379 | 155 | 3.7E-5 | – | |
PIRSF | 275 | 387 | 113 | 1.5E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0344800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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