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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0345200 |
| Transcript ID | LotjaGi3g1v0345200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal tolerance protein C4; TAIR: AT1G51610.1 Cation efflux family protein; Swiss-Prot: sp|Q8H1G3|MTPC4_ARATH Metal tolerance protein C4; TrEMBL-Plants: tr|C6TAH5|C6TAH5_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0345200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72282331..72287329) extracted from Lotus japonicus Gifu genome v1.2.
ATCTGGACCTAAATAATACTAGAAGATTCAGTCTTCTTGTATATATGTTAGCAGCTGTGGGTTGGAGAGAGGCACTGAAA CCCTGCAATTGCAATTGGTTGAATATTCCATCAATATTTAATTTCCTTCTTTCCACTTCACTCTACTCCACTCCTTTCAG CTCCTCACCATGCTTCTTCAATCCATCAACAATGGAATTCGGAAATAGCTGAAAGCCCTAATTTTGACTCTTACCCATCA ACCGATTCATCATCACCTCAACTGGGTTCCCATCATTTCATCTTAAATGCGAATATCCTACAACCTTCTTCGCTCTCGCT TTCGCCGCACTCACCAACACTGGTCTTGTTCAATCTCCATTATCGCTCTCAAACCAGACCACCACCCACGACCAACCACC ACCACCACCACCACCTCCCATTCACTCCCCTCCAGACGTTCAATCTGCCTCTCCTTCGATGCTCGTCGCCACCTCCTTCA CCATCACCATTACTCCTCCAATCGCGGTACCTCTCTTTTTTTCATTTCTTCTGCTACCCATTATTTTTCCTTATCTTATC TCATTCATTCACCTTTTTCTCTTCACTCTTGTAGGTTTCTTTACAAGGACTAAGCAGACAAAGATCATTGAATTCAACGA TCGCCACAGGTTGTTTATTTTTTTGGTTTATTTTTTATGTTTTTGCTAGCATTATCTTTGTTATATATGAAAACAATTTA CATTGACATGGATATGTTTCTTTTTCTTGTTTACCATCTTTGTTGTTTGTTTTTTATTCAATTGAGTGAGAGGATAAGAT AACAATGCTTACATGCCTTGTTTTTGCTTTTTGGGTTGTCTATTATTGTAGTCAGCGAGCTGTCACGACCGCATTGTGGT GTAACTTTCTTGTATTTTCTCTCAAATTTGGAGTGTGGTTATCTACCTCTAGCCATGTTATGCTAGCTGAAGTTGTGCAT TCAGTTGCCGACTTTGCAAACCAGGTATGGTTTAGTTGGCATTGTATGATGGGTTGCTTAATTTGAACTAGGAACTAATG TGTGCTCCGTAACTTATTTTGTAGGCGTTGCTTGCTTATGGTCTAAGTAGCTCGAGGCGCGCACCTGATGCTATTCATCC GTGAGTTGCACAGTCTTGATTAATTTTGTCAAACATGTACCGATTTTTTTGTTACTTATTCAGTTTCAAGCTGTTTTCTG ATATTAGATATGCATTCACATGCTGGATGAACTAATGGTGAATGCATAGATAGCTATTGGATCTGAGTTCGGTGAATTGT GCTTCCATTACTAATTGTGCGAAATTTAACGAGACTTGATGTATGAATATTAGTTATAGCGTTCATTACTGTTTTATGGG TTGAAATGAGATAGCCTCTGTCTTCGCATGAATTTAGAACTTAATCACTGCACTGAAATGGTAATATCTTCTATTTCTGT AGTTATGGCTATTCCAAGGAAAGATTTGTTTGGTCTTTGATATCTGCTGTTGGGATATTTTGTCTTGGTTCTGGCGCTAC AGTTGTTCATGGGGTTCAAAACTTGTGGATTGCTCAGGTATTTAACTAGGTAGAATGAAAACATTTAGTTTCTTTATCGT TATTTTCATTTTCCATATTTTAATATTTGTCTGTGAATTTTCTCTCAATGAATTGAATTTCGAGGGTTTCCTTTTCAGCC CCCTGAGAATATGAAATATGCAGCTTTGGTCCTATGCGGTTCATTCATCATTGAAGGTACTGCTTTCTGCATGTCAATCT GGTGCAGTCTATTCTCCTTCAGCTATTTCAGTTCTTTCCATTTTTCATTGGGCATTTTTTGTTAGGTGCCTCTCTTATTG TTGCCATACAAGCTGTCAAGAAAGGTGCAGCCGCAGAGGGAATGACAATACGAGACTATGTTTGGCGTGGCCATGATCCT ACATCAGTTGCGGTGATGACAGAGGTGGAACTTATTGCACTCAATCATCTTTACTTACTGGAACATGTTACTGTTACTTT GGTTTTAACAAGAATTGCTGATATATCATAGAGGAAGGAAGCTCACAGCTCAGAAATAAGATTTTAGATAAAATAAATTA TAAATTATTATTCATCACTTATTTACATATTTGGCCATATTTTTCCTTAGAAACAGTTATTAAAGCTAGGTACACTTTTT CTATTATACAACTAACTCGAACTTTAATTTTTATGTTTCTCATAGGCCATGGTAAAGAAAATGTGTTATTTATTCATTTT GCATCATAGAAAGGAATGAGGAAGAGCGACTTTAAAGTTTAAACATGTATTGCTGAGAGTTGTTTATTCATCTCTCTGCT GGGCTACGCAACAGGAACTTAGTTGTCTATTTAGATTTCAAAACCCTTTAGAAACAAATTAAGATTCTGTCCTGTCGTTT GTTCTTATAAATAATTGAAAAATATGCAGGATGGGGCTGCAGTAACTGGCCTTCTTATCGCTGGGGCATCATTGGTTGCA GTGAACGCTACTGGGAATGCCATTTATGATCCCATAGGATCAATCATAGTTGGCAATTTACTTGGAATGGTAAAGAGGAT TCAGAAGACAGCAAAATTTTCCAGCCATTTGAAGTTGGAGAGCATAGAGCTGGTATCTAATTTTGTTTAATTTCATGGTC AATTAACTTTGCAGGTCGCAATATTTCTTATCCAGAGAAACCGACATGCTTTGATTGGTAGAGCTATGGATGATCATGAT ATGGATAAAGTACTTCAGTTTTTGAAAAATGACCCGGTACAAGCATTCTAGTTTCTATAAAATTGCATAATAGCTTTTGT CTTATTCATTTTACTAAGGTGGCTTTTATGCTACAGGTTGTTGATTCCCTCTATGATTGCAAAAGCGAAGTTATTGGGCC TGGATTCTTCAGATTTAAGGCAGAAATAGGTTATCCTTCACATCATTGTTCCTGTTTAAATTTTTTGATAGTTGTCTAAT GTTTTTCAAAAAAACATTATCATGAATATAGTCTTGGAAGTTATGAACATGAAAGGTCTCATTTTATTTTAATTTCAATA TATTTCTGATCCTGTTGTAATAGAATCATTCAACCAGTATGGTCTGTCTAGTTTTCAATTTCAATACCTTTATTTTGGTT ATTTGCATCAATCATGCTATCCTTTCAAGTTCAAACTTAAATAGTGGTGCTATCTGGACCCTTACAGTTTGTTTTTACCA TTCTCACTTTCTGTTAGAATTTCAGGATGGTAGAGTAAGGCTAGTTTGGGTTAACCGTAAAGAAAGGTGTGATCTATCTT TTTTAGGTTCTTTTAAAAGAAGTTACTAGTTGGGGGAAATCACTGAAACTGTTTTATGGAATTTTGCTTTTTTTTCCATA AACACTTGTCAATTTTTCAAAACTTATTTAATTTAAAATTGCTCTTTTTGAAAAAAGAAAAAAACACATATATATGGAGT TTTTCATTTCATAAATTCAAATTTTGACGTCTAAATGCACGAAGCATTTTAAATTCAAGTAATGGTAACAATTAAGCATA TGATGGTTTTAATCTGCTCATTCATAATGAAACAGATTTTAATGGAGTGATGGTGGTGCAAAATTATCTTAAAAGGACTG GACGTGAAGAGTGGGCCAAACAGGTTGATACTCTTCTACTACATGTTATAAAACCTTTGGAAATATGCTCTCTATGTTCT GTTGTTATTATTGCTTTTAACTCTCACTCACTGCAGTTTCTTATTACATTATAGCTAAACAGTTATGCAATGGTACCAGT TGAAAATATGTGCTTTGGCAGTTAACCTCATGAAAACTATCCTAGGGCATTAGTTTACATTTAAAAGAATAATATAATCC TGTTCTTGAAGCATGGCTAATTTAACTTAACCCCCTCCTTTCATAATCATTCAACACAATAATTCCATTGCCCTGATTAC CAATTTGTGGTTAGAATCTTTAGATATGTAACTGTCATAACTACCTCTGAACTTTTATTGTTTACAGTTTCGTGAAGCTT CAAAGGAGGGTGATGATACTGCCTTGATGAGGATTATGTCAAATTATGGTATGCAGTAGAAACTTGATCCTTATAATCTT GCTTATTGAGAAATGATTACTTGCTGACAGTTCTGAGTTATGGCAGGTGAGGAAGTAGTTACAGCGTTAGGAAGTGAAGT GGATAGGTTAGAGACAGAGATTCAGAATCTTGTTCCTGGCATTCGGCATGTTGATATTGAGGCCCATAATCCAACGGAAG TAACATTATCAACTGAAAAATTTCAATGAATTCAATACCCTATTCTTTTTAATTCATATTATCTAAGCATTTGTGATTAT TGATTTGGCTACATCATGTATCACGAGGCCTTTTGCTTCTTAAGGAAATATGAAGTTTCGAGTTACTTGCCTCAGTGCAC AAATTCATGTTTTCTTCTCCACCTAAACATGCATGGGTTTCTGGAATGATGTCAGTCCAACCTCGAGTGTGAAAACAAAC CATCTATACGAGAGAAATGGTGTTTAAATGCTAAGCTCGATTATATGCTCGGAGATCGTGTCATCTGCAGCAAGTACCTT TTTTCATGGTTAAGTGAATTAACTCAATTAAGTCATTAAATTTCATCACCACTGCTGAATGTTAGCCTAGCCTTTGCTTC AGATAGATTCCATGGATCTGTTTGTAAAGTTAAATTTGTTTCTCCACCAGCAAAATCTATTTTTGGGTGTTTGAATGCTT CCTTTCATAACTGATTCTAAGTTTCAAAATCAGTTATGCTATGAAGTTGCAAAGTTTAGCTTTTGTGGTGGATATATATA AGATTTCACAATTGAAATTCATAATCTTACAACCTACCTTGCTCGAAAAATGTATTTAAATATTAATCACTATTTTTAAC TCACTATCATACTAAATTTTACCAAAATAAACTGAGAACATAAACACAAGTGTGCACTAACAACACGGCTATGAATGAAT ACCGATAGTAGGGAAATATTAAAATTATTTTGTTTGGAC
CDS sequence (LotjaGi3g1v0345200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAATATCCTACAACCTTCTTCGCTCTCGCTTTCGCCGCACTCACCAACACTGGTCTTGTTCAATCTCCATTATCGC TCTCAAACCAGACCACCACCCACGACCAACCACCACCACCACCACCACCTCCCATTCACTCCCCTCCAGACGTTCAATCT GCCTCTCCTTCGATGCTCGTCGCCACCTCCTTCACCATCACCATTACTCCTCCAATCGCGGTTTCTTTACAAGGACTAAG CAGACAAAGATCATTGAATTCAACGATCGCCACAGTCAGCGAGCTGTCACGACCGCATTGTGGTGTAACTTTCTTGTATT TTCTCTCAAATTTGGAGTGTGGTTATCTACCTCTAGCCATGTTATGCTAGCTGAAGTTGTGCATTCAGTTGCCGACTTTG CAAACCAGGCGTTGCTTGCTTATGGTCTAAGTAGCTCGAGGCGCGCACCTGATGCTATTCATCCTTATGGCTATTCCAAG GAAAGATTTGTTTGGTCTTTGATATCTGCTGTTGGGATATTTTGTCTTGGTTCTGGCGCTACAGTTGTTCATGGGGTTCA AAACTTGTGGATTGCTCAGCCCCCTGAGAATATGAAATATGCAGCTTTGGTCCTATGCGGTTCATTCATCATTGAAGGTG CCTCTCTTATTGTTGCCATACAAGCTGTCAAGAAAGGTGCAGCCGCAGAGGGAATGACAATACGAGACTATGTTTGGCGT GGCCATGATCCTACATCAGTTGCGGTGATGACAGAGGATGGGGCTGCAGTAACTGGCCTTCTTATCGCTGGGGCATCATT GGTTGCAGTGAACGCTACTGGGAATGCCATTTATGATCCCATAGGATCAATCATAGTTGGCAATTTACTTGGAATGGTCG CAATATTTCTTATCCAGAGAAACCGACATGCTTTGATTGGTAGAGCTATGGATGATCATGATATGGATAAAGTACTTCAG TTTTTGAAAAATGACCCGGTTGTTGATTCCCTCTATGATTGCAAAAGCGAAGTTATTGGGCCTGGATTCTTCAGATTTAA GGCAGAAATAGATTTTAATGGAGTGATGGTGGTGCAAAATTATCTTAAAAGGACTGGACGTGAAGAGTGGGCCAAACAGT TTCGTGAAGCTTCAAAGGAGGGTGATGATACTGCCTTGATGAGGATTATGTCAAATTATGGTGAGGAAGTAGTTACAGCG TTAGGAAGTGAAGTGGATAGGTTAGAGACAGAGATTCAGAATCTTGTTCCTGGCATTCGGCATGTTGATATTGAGGCCCA TAATCCAACGGAAGTAACATTATCAACTGAAAAATTTCAATGA
Protein sequence (LotjaGi3g1v0345200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRISYNLLRSRFRRTHQHWSCSISIIALKPDHHPRPTTTTTTTSHSLPSRRSICLSFDARRHLLHHHHYSSNRGFFTRTK QTKIIEFNDRHSQRAVTTALWCNFLVFSLKFGVWLSTSSHVMLAEVVHSVADFANQALLAYGLSSSRRAPDAIHPYGYSK ERFVWSLISAVGIFCLGSGATVVHGVQNLWIAQPPENMKYAALVLCGSFIIEGASLIVAIQAVKKGAAAEGMTIRDYVWR GHDPTSVAVMTEDGAAVTGLLIAGASLVAVNATGNAIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDHDMDKVLQ FLKNDPVVDSLYDCKSEVIGPGFFRFKAEIDFNGVMVVQNYLKRTGREEWAKQFREASKEGDDTALMRIMSNYGEEVVTA LGSEVDRLETEIQNLVPGIRHVDIEAHNPTEVTLSTEKFQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 94 | 94 | - | – | |
| PANTHER | 73 | 430 | 358 | 4.6E-175 | ||
| SUPERFAMILY | 89 | 307 | 219 | 1.57E-31 | ||
| Gene3D | 92 | 306 | 215 | 1.8E-22 | ||
| TIGRFAM | 93 | 358 | 266 | 3.3E-29 | ||
| Phobius | 95 | 115 | 21 | - | – | |
| Pfam | 98 | 299 | 202 | 2.5E-24 | ||
| Phobius | 116 | 120 | 5 | - | – | |
| Phobius | 121 | 143 | 23 | - | – | |
| Phobius | 144 | 162 | 19 | - | – | |
| Phobius | 163 | 180 | 18 | - | – | |
| TMHMM | 164 | 186 | 23 | - | – | |
| Phobius | 181 | 199 | 19 | - | – | |
| Phobius | 200 | 223 | 24 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 224 | 254 | 31 | - | – | |
| TMHMM | 244 | 266 | 23 | - | – | |
| Phobius | 255 | 274 | 20 | - | – | |
| Phobius | 275 | 279 | 5 | - | – | |
| TMHMM | 276 | 298 | 23 | - | – | |
| Phobius | 280 | 298 | 19 | - | – | |
| Phobius | 299 | 440 | 142 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0345200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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