Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0351900 |
| Transcript ID | LotjaGi3g1v0351900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20; TrEMBL-Plants: tr|I1KGW4|I1KGW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0351900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73131303..73133395) extracted from Lotus japonicus Gifu genome v1.2.
CCTATATATAAAGAAAACGCTCAGCATTCAGCAACAAGAAGCAATTGCTTTGTGAATCCTAGTTTTGAGTTTCACAGCTT CAACGAAAACAATGTCTGCAGCTACATATTTACCAGATGAGTGTTGGGAATTTGTGTTGGGATTCCTGAACAACAAACAG GACCACCATTACTTGGAGTCTCTGTCCCTCGTCTCCAAGCAACTCCTCTCCATCACCAACCGCCTCCGATTCTCCCTCGC CATTCACGATCCAACTCTCCCCTTCCTCCCTCGCCTCTTCCACAGGTTCCCCAATCTCACCTCCCTCGACCTCACGCACT TCCACGGTGACCTCGACGCGCTTCTCCTCCAAATCTCGCGCTACCCCTTGCGCCGCCTCACATCCCTCGACGTCTCGCAC CATGAAACGTTTCCGGCAAATGGGTTGCGAGCTTTGGCCGAAAACACGAAAACATTGACCTCCCTCACCTGCTCCCACAT GGGTTCTCTCGCCAACGCCGACCTCCGCCTCATCACCGATTGTTTCCCTTTCCTCCAAGAACTCGACCTTAGCAGCAATG TCCTTAGTCGTACTCGTACGGTAGAGCCTTTGCCCAAGCTCCTCCGCAAGGTTAATCTCTTTGGTGACGAGAACTTCATT ACCGAAGAAGCGCTTGTCAGTGTGTGCAAGAACTGTGAGTTTCTCGAAGAAGTGACGATCTCTGATTGCACTTCCATAAC CGCATATGGCATTGCTTCCGCGATCCGCCAGAGACCCGGTTTGAGGTCTTTCTCTGTTGACAGCTTAAGGGGATCTGTCA CTGCTAGTTCTAGCTTCATTGATTCGTTGGTGAGTTTGAAGAGCTTGACTTGTCTTCATTTTAGGTATTTATCTATCTCG GATGAGTTGCTCTGCTCTGTTGCAGAGGAAGGTCTTCCTTTGAGGAAGCTTGTCCTCCATTGTTGCAGAAACTACACCTA TTCTGGAATCTTGTATTTGTTGTCAAGGTGTCAGTTTGTCCAGCATTTGAATCTTCAATATACTGAATTTCTGAATGATC AGCTTCTCACCGAGTTGTCAGTGTTTCTGGGTAATTTGATATCTATAGACATTAGTTTTTGTCAGGGGCTCACAGAGTCA GCCCTTTTTGCTCTTATCAGGAACTGTTCTTTGCTCAGTGAGATCAAAATGATGTTTACAGGGAATGGGAAAGAGAAGGT CCAGTATTCCAATTCTTTCATGAATGGTTGTGTGAACCCTCAGGTGAAGTTTCTCCATTTGCCTTTTAATTCATGGCTGG GAGGTGAAATCATCAAAATTTTGAGTTTGATCTGCCCCAATTTGGAGCTTCTTGACTTGCGATCTTGCGGTACTGAAGAT GTTGTTGAAGTTTTAAGGAGATGCTGTAAAATTAGGCATTTGAGGGTAGACCATTGTTCATCAGTGAAGCTGCATGGGAT GAACTTTAAAGTTCCCAATCTGGAGGTGTTGAGTTTGGCGTATTCAGGAATTGATGATGAAACACTCTCTGTGGTCTCAA AGAGTTTCCGTGGGCTTCTGTACCTGAATTTGGAAGATTGTCCAAATGTCACAGACAAGGGTGTGAGGCAAGTAGTAGAA AACTGCAAACAACTAAGAGAGATAAATTTGAGTTACTGTAAACAAGTGGTTGGTAGTGATGTTGCTTGGATGGTATCTTT AAGGCCAACATTGAGAAAGATAATGGCTCCGCGTTATTTCCATCCTACCCGTATCCGGAATGAACTCTTCTTCTTGCGTC ATGGATGCCTTGTCTTGGCATGAGGTTCTTGTTGGAGATTGATGAAATGTTATAGAAGCTTATAGAAAGTGATAAAATAA TAGCAGCCGTATCTATGATGATGAATTTAGAATTCTTGAGAAAGCTTTAGTTCTTATGTATGCTAGAATTAACTAAGTTA TAATGTCTAGATAGTTCATGAGAACATATGTAGTAGAATTAACCGACATACTCAAGCCTATTAATTGGCCAAATGTATTA GCCCTTGGAGGTGTGGAGAAATCACTAATTCATTTCCACCATCATGTGTACATGCCCTGCACCATGAATAAAAGGCACAC GGCTAAATTCACA
CDS sequence (LotjaGi3g1v0351900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCAGCTACATATTTACCAGATGAGTGTTGGGAATTTGTGTTGGGATTCCTGAACAACAAACAGGACCACCATTA CTTGGAGTCTCTGTCCCTCGTCTCCAAGCAACTCCTCTCCATCACCAACCGCCTCCGATTCTCCCTCGCCATTCACGATC CAACTCTCCCCTTCCTCCCTCGCCTCTTCCACAGGTTCCCCAATCTCACCTCCCTCGACCTCACGCACTTCCACGGTGAC CTCGACGCGCTTCTCCTCCAAATCTCGCGCTACCCCTTGCGCCGCCTCACATCCCTCGACGTCTCGCACCATGAAACGTT TCCGGCAAATGGGTTGCGAGCTTTGGCCGAAAACACGAAAACATTGACCTCCCTCACCTGCTCCCACATGGGTTCTCTCG CCAACGCCGACCTCCGCCTCATCACCGATTGTTTCCCTTTCCTCCAAGAACTCGACCTTAGCAGCAATGTCCTTAGTCGT ACTCGTACGGTAGAGCCTTTGCCCAAGCTCCTCCGCAAGGTTAATCTCTTTGGTGACGAGAACTTCATTACCGAAGAAGC GCTTGTCAGTGTGTGCAAGAACTGTGAGTTTCTCGAAGAAGTGACGATCTCTGATTGCACTTCCATAACCGCATATGGCA TTGCTTCCGCGATCCGCCAGAGACCCGGTTTGAGGTCTTTCTCTGTTGACAGCTTAAGGGGATCTGTCACTGCTAGTTCT AGCTTCATTGATTCGTTGGTGAGTTTGAAGAGCTTGACTTGTCTTCATTTTAGGTATTTATCTATCTCGGATGAGTTGCT CTGCTCTGTTGCAGAGGAAGGTCTTCCTTTGAGGAAGCTTGTCCTCCATTGTTGCAGAAACTACACCTATTCTGGAATCT TGTATTTGTTGTCAAGGTGTCAGTTTGTCCAGCATTTGAATCTTCAATATACTGAATTTCTGAATGATCAGCTTCTCACC GAGTTGTCAGTGTTTCTGGGTAATTTGATATCTATAGACATTAGTTTTTGTCAGGGGCTCACAGAGTCAGCCCTTTTTGC TCTTATCAGGAACTGTTCTTTGCTCAGTGAGATCAAAATGATGTTTACAGGGAATGGGAAAGAGAAGGTCCAGTATTCCA ATTCTTTCATGAATGGTTGTGTGAACCCTCAGGTGAAGTTTCTCCATTTGCCTTTTAATTCATGGCTGGGAGGTGAAATC ATCAAAATTTTGAGTTTGATCTGCCCCAATTTGGAGCTTCTTGACTTGCGATCTTGCGGTACTGAAGATGTTGTTGAAGT TTTAAGGAGATGCTGTAAAATTAGGCATTTGAGGGTAGACCATTGTTCATCAGTGAAGCTGCATGGGATGAACTTTAAAG TTCCCAATCTGGAGGTGTTGAGTTTGGCGTATTCAGGAATTGATGATGAAACACTCTCTGTGGTCTCAAAGAGTTTCCGT GGGCTTCTGTACCTGAATTTGGAAGATTGTCCAAATGTCACAGACAAGGGTGTGAGGCAAGTAGTAGAAAACTGCAAACA ACTAAGAGAGATAAATTTGAGTTACTGTAAACAAGTGGTTGGTAGTGATGTTGCTTGGATGGTATCTTTAAGGCCAACAT TGAGAAAGATAATGGCTCCGCGTTATTTCCATCCTACCCGTATCCGGAATGAACTCTTCTTCTTGCGTCATGGATGCCTT GTCTTGGCATGA
Protein sequence (LotjaGi3g1v0351900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAATYLPDECWEFVLGFLNNKQDHHYLESLSLVSKQLLSITNRLRFSLAIHDPTLPFLPRLFHRFPNLTSLDLTHFHGD LDALLLQISRYPLRRLTSLDVSHHETFPANGLRALAENTKTLTSLTCSHMGSLANADLRLITDCFPFLQELDLSSNVLSR TRTVEPLPKLLRKVNLFGDENFITEEALVSVCKNCEFLEEVTISDCTSITAYGIASAIRQRPGLRSFSVDSLRGSVTASS SFIDSLVSLKSLTCLHFRYLSISDELLCSVAEEGLPLRKLVLHCCRNYTYSGILYLLSRCQFVQHLNLQYTEFLNDQLLT ELSVFLGNLISIDISFCQGLTESALFALIRNCSLLSEIKMMFTGNGKEKVQYSNSFMNGCVNPQVKFLHLPFNSWLGGEI IKILSLICPNLELLDLRSCGTEDVVEVLRRCCKIRHLRVDHCSSVKLHGMNFKVPNLEVLSLAYSGIDDETLSVVSKSFR GLLYLNLEDCPNVTDKGVRQVVENCKQLREINLSYCKQVVGSDVAWMVSLRPTLRKIMAPRYFHPTRIRNELFFLRHGCL VLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 232 | 229 | 2.5E-23 | ||
| PANTHER | 6 | 560 | 555 | 1.9E-202 | – | |
| PANTHER | 6 | 560 | 555 | 1.9E-202 | – | |
| SUPERFAMILY | 55 | 252 | 198 | 1.26E-15 | – | |
| SMART | 66 | 91 | 26 | 580.0 | ||
| SMART | 93 | 118 | 26 | 44.0 | ||
| SMART | 168 | 194 | 27 | 680.0 | ||
| SUPERFAMILY | 184 | 443 | 260 | 1.88E-25 | – | |
| SMART | 195 | 220 | 26 | 55.0 | ||
| Gene3D | 233 | 368 | 136 | 1.4E-13 | ||
| SMART | 274 | 299 | 26 | 80.0 | ||
| SMART | 326 | 351 | 26 | 5.0 | ||
| Gene3D | 370 | 448 | 79 | 1.2E-5 | ||
| SUPERFAMILY | 407 | 528 | 122 | 1.45E-8 | – | |
| SMART | 408 | 430 | 23 | 45.0 | ||
| Gene3D | 449 | 540 | 92 | 7.8E-17 | ||
| SMART | 479 | 504 | 26 | 0.045 | ||
| SMART | 505 | 530 | 26 | 29.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0351900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…