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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0352200 |
| Transcript ID | LotjaGi3g1v0352200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|A0A151RJU6|A0A151RJU6_CAJCA F-box/LRR-repeat protein 4; Found in the gene: LotjaGi3g1v0352200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73186113..73188792) extracted from Lotus japonicus Gifu genome v1.2.
CATTGGATTCATGCAGTATACCCCTATAAGATGGTAACTTTATAAGTATTTGGGAGATGCGTTTGAGTTCCATGTAACAC ACATCAAAATTTGAGCACTTTTGGACTGGGGTACTTCTTGGCACCCCACAGCAATTAAAAAAAGTTAAATGAAAAGTAAA AGCATGAAAAGTGAAGGTTACAGATCACCATACCAGAAGCCAACCTAACAAGCAAAAGACTTTCTAGAGTTTCATCATTT GAAAGGGTCCCAGTCAAATACAAGCCTCATTCAGGAGTTTCATTTTGTCATGTTGATCCTCCCGGTAGCTAATCTGACCA TAGTCCAAGATCCTCTCTTTTTGACACACCCTGAACTTGTTAAATATCCATTGCATTGGGTTGATTTGTCACTTTTCTGT GTTGATAAATCATTAGCCATCAATTGAACTTTGGCTCCAAGTTCCAAACTTGTTCTGCCATTAGTCTTTTTTCTTACTAT TCTTGTTAGATCAAATACCAAGATGTCAGTGAAAGATTTCCCTGAAGAATGCTGGGAATTAGTCTTCAGATTCCTCAGCC ACACTCATGATTTGGAGTCTCTATCTCTTGTCTGCAAGCAATTCCTTTCCATCACAAACCACCTTCAATCCTCTCTCAAA ATCTATGACAAAACCATCCTCCTCCTTCCTAATCTATTCTCAAGATTCTCAAGGCTCAAAACCATAGACCTCAGCAACTT CAATGGTGACCTCAAGGTCTTACTCCATCAAATTTCTCAATCTGGATTGGACCTTGATTCGCTCAATCTTTCCAATCAGA GAACAATTCCCATTGATGGGTTGAGAGAGCTTGGTTCAAAGATGAAAAATTTTAAGGTTTTGACCTGCTCCAACATTGGT TCTCTGCAAGATGGCCACCTTGTGGTCATAGCTTATTGTTTCCCATTTCTTGAAGAGCTTGACATAAGCTTTCCATTGGA TTCTCAAGCATCTGATTTTGGGATACTAAGGCTTGCTTCATTGCTTGAGAATCTTCGCAAGATTAACCTCTCTGGTAATC ACTTAATCACTGATAAATCTCTTTTCTCTCTGTGCCAAAACTGTACTTCAATGGAGCAAATCTCATTCTTCACATGTTTC AAGATAACCCAAGTTGGCATTGCTTCTGCAATTCGCCTCAGACCAAGTTTGAGTTCAATCTCTTTCAATATTGAAAAGAA AATAATTCATGGACCTGGTTTGACACCTTTACCTATCAACCTTGATTTGATTGATTCATTCAAGAGTTTGAAAAGATTAA CTGCTGTTGATTTGTCAAACTCTTTTATCTCGGATGAGTTTCAAGTTTCAATTGCTGAGGGAAGTGGAGGTGGTAATCTG CTGAATAAGCTCATCCTCCAAGACTGTTGCAACTGCACATTTGAAGGAATCAATTGTTTGTTATCCAAATGTCAATCTGT TCAGTACTTGGATCTTAGTAAAGCTGATTTTCTAACAGACCAATGTATCAGTAAATTGTCTGTGTTTCTTCATAGTTTAA CCTCTATTAACCTTAGTGGTTGCTGCCAGCTGACAAATTCTACTTTTTTCACACTCACAAGAAACTGTCCTTTGATCAGT GAGATCAACATGGAGAGAACATATCTGGGGGTAGAAGGGGAAGAAGATTCCCATTCCATGCTGGATTTTGTTGTCAATGT ACAAGTGAGAAAAGTTTATCTGGGTGATAATGTTTTACTGAGAGATGCAAGTTTGATAAAATTTGCTTCAATTTGCCCCA ATTTGCAGCTTCTTGACTTAAATGCTTGTGAGGGTGTCTCTGGAGGGTGTATTGTGGAGGTTTTGAAGAAATGCTGTGAC ATGAGGCATTTAAACCTGGCCTATACAGGAATTAAAGAGTTAGAGATAGACTTTGTAGTTTCACAATTGGAGATTCTGAA CTTGTCAGGGTCAAGCATTGAGGATGAAGCACTTTCAATGATCTCAAGGAGGTTTCCTGGACTATTACTTCTGGACATTC AGAATTGCTGGTGTGTGACAGCCAAAGGGGTGAGGGAAGTAGTGGAAAACTGCAGAGCAATGAAAGAGTTGAATTTGAAA AATTGTGATTTGGTGGATGATGATTTTGTTGTTGGGGTGAAGAGTTCAAGCCCATCATTGAGAACAATAATCACACCTTC TGGTGTTGGTGTTTATTACTGATCAGAAGCAGGGGAAATTCAAATTGATATGGATCCTGTCTTGTTTGCTAGTGTTGGAC CTGCCAGTATCAAGAATCCTATGTGTGCTGATAGCATTCTTGACAGAAAAAGAAAGTTGCAAGCGGTGTGTTTATGCTAG TGCATATGTGTGTCTTTTTTTTCTAATGAGTGTATAGATATTGAATTTATTAAGTGAGGCAAAACCATTATGCTTTCTTT GGTTTTAGAGAGAGTGAGAACAGAAAAGATGAGTGAAGAGAAATTGGTGAGGAAAAAGAAGAGATTTTATAGGTTGTGTG TATAATAGAAAAATAGAAAAACGAGAAGAGAAAAAATGAAGTGTCTCTTCTCTCATTTTGTATTGTAGAATAGAGAAATG AAAGTGATAAGATTTCTTTTGTATGAAATAACACGTTAACCTTCAATATATCATCAATATCAATATCAATATCAATATCA TCAATATCAATATCATCAATATATATTAGAAAAGAAGAAC
CDS sequence (LotjaGi3g1v0352200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGTGAAAGATTTCCCTGAAGAATGCTGGGAATTAGTCTTCAGATTCCTCAGCCACACTCATGATTTGGAGTCTCT ATCTCTTGTCTGCAAGCAATTCCTTTCCATCACAAACCACCTTCAATCCTCTCTCAAAATCTATGACAAAACCATCCTCC TCCTTCCTAATCTATTCTCAAGATTCTCAAGGCTCAAAACCATAGACCTCAGCAACTTCAATGGTGACCTCAAGGTCTTA CTCCATCAAATTTCTCAATCTGGATTGGACCTTGATTCGCTCAATCTTTCCAATCAGAGAACAATTCCCATTGATGGGTT GAGAGAGCTTGGTTCAAAGATGAAAAATTTTAAGGTTTTGACCTGCTCCAACATTGGTTCTCTGCAAGATGGCCACCTTG TGGTCATAGCTTATTGTTTCCCATTTCTTGAAGAGCTTGACATAAGCTTTCCATTGGATTCTCAAGCATCTGATTTTGGG ATACTAAGGCTTGCTTCATTGCTTGAGAATCTTCGCAAGATTAACCTCTCTGGTAATCACTTAATCACTGATAAATCTCT TTTCTCTCTGTGCCAAAACTGTACTTCAATGGAGCAAATCTCATTCTTCACATGTTTCAAGATAACCCAAGTTGGCATTG CTTCTGCAATTCGCCTCAGACCAAGTTTGAGTTCAATCTCTTTCAATATTGAAAAGAAAATAATTCATGGACCTGGTTTG ACACCTTTACCTATCAACCTTGATTTGATTGATTCATTCAAGAGTTTGAAAAGATTAACTGCTGTTGATTTGTCAAACTC TTTTATCTCGGATGAGTTTCAAGTTTCAATTGCTGAGGGAAGTGGAGGTGGTAATCTGCTGAATAAGCTCATCCTCCAAG ACTGTTGCAACTGCACATTTGAAGGAATCAATTGTTTGTTATCCAAATGTCAATCTGTTCAGTACTTGGATCTTAGTAAA GCTGATTTTCTAACAGACCAATGTATCAGTAAATTGTCTGTGTTTCTTCATAGTTTAACCTCTATTAACCTTAGTGGTTG CTGCCAGCTGACAAATTCTACTTTTTTCACACTCACAAGAAACTGTCCTTTGATCAGTGAGATCAACATGGAGAGAACAT ATCTGGGGGTAGAAGGGGAAGAAGATTCCCATTCCATGCTGGATTTTGTTGTCAATGTACAAGTGAGAAAAGTTTATCTG GGTGATAATGTTTTACTGAGAGATGCAAGTTTGATAAAATTTGCTTCAATTTGCCCCAATTTGCAGCTTCTTGACTTAAA TGCTTGTGAGGGTGTCTCTGGAGGGTGTATTGTGGAGGTTTTGAAGAAATGCTGTGACATGAGGCATTTAAACCTGGCCT ATACAGGAATTAAAGAGTTAGAGATAGACTTTGTAGTTTCACAATTGGAGATTCTGAACTTGTCAGGGTCAAGCATTGAG GATGAAGCACTTTCAATGATCTCAAGGAGGTTTCCTGGACTATTACTTCTGGACATTCAGAATTGCTGGTGTGTGACAGC CAAAGGGGTGAGGGAAGTAGTGGAAAACTGCAGAGCAATGAAAGAGTTGAATTTGAAAAATTGTGATTTGGTGGATGATG ATTTTGTTGTTGGGGTGAAGAGTTCAAGCCCATCATTGAGAACAATAATCACACCTTCTGGTGTTGGTGTTTATTACTGA
Protein sequence (LotjaGi3g1v0352200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVKDFPEECWELVFRFLSHTHDLESLSLVCKQFLSITNHLQSSLKIYDKTILLLPNLFSRFSRLKTIDLSNFNGDLKVL LHQISQSGLDLDSLNLSNQRTIPIDGLRELGSKMKNFKVLTCSNIGSLQDGHLVVIAYCFPFLEELDISFPLDSQASDFG ILRLASLLENLRKINLSGNHLITDKSLFSLCQNCTSMEQISFFTCFKITQVGIASAIRLRPSLSSISFNIEKKIIHGPGL TPLPINLDLIDSFKSLKRLTAVDLSNSFISDEFQVSIAEGSGGGNLLNKLILQDCCNCTFEGINCLLSKCQSVQYLDLSK ADFLTDQCISKLSVFLHSLTSINLSGCCQLTNSTFFTLTRNCPLISEINMERTYLGVEGEEDSHSMLDFVVNVQVRKVYL GDNVLLRDASLIKFASICPNLQLLDLNACEGVSGGCIVEVLKKCCDMRHLNLAYTGIKELEIDFVVSQLEILNLSGSSIE DEALSMISRRFPGLLLLDIQNCWCVTAKGVREVVENCRAMKELNLKNCDLVDDDFVVGVKSSSPSLRTIITPSGVGVYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 237 | 237 | 4.0E-26 | ||
| ProSiteProfiles | 1 | 51 | 51 | 8.517 | ||
| PANTHER | 5 | 554 | 550 | 8.4E-169 | – | |
| Pfam | 5 | 46 | 42 | 1.7E-4 | ||
| PANTHER | 5 | 554 | 550 | 8.4E-169 | – | |
| SUPERFAMILY | 17 | 226 | 210 | 7.85E-14 | – | |
| SMART | 88 | 113 | 26 | 270.0 | ||
| SMART | 168 | 193 | 26 | 0.0079 | ||
| Gene3D | 244 | 385 | 142 | 1.6E-15 | ||
| SUPERFAMILY | 250 | 539 | 290 | 4.71E-31 | – | |
| SMART | 310 | 335 | 26 | 110.0 | ||
| SMART | 336 | 361 | 26 | 1.9 | ||
| Gene3D | 386 | 462 | 77 | 5.9E-9 | ||
| SMART | 418 | 443 | 26 | 33.0 | ||
| Gene3D | 463 | 551 | 89 | 3.2E-14 | ||
| SMART | 466 | 490 | 25 | 150.0 | ||
| SMART | 491 | 516 | 26 | 130.0 | ||
| SMART | 517 | 545 | 29 | 57.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0352200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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