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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0354400 |
| Transcript ID | LotjaGi3g1v0354400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Shikimate kinase; TAIR: AT2G35500.1 shikimate kinase like 2; Swiss-Prot: sp|O82290|SKL2_ARATH Probable inactive shikimate kinase like 2, chloroplastic; TrEMBL-Plants: tr|I3RZR1|I3RZR1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0354400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73604350..73608762) extracted from Lotus japonicus Gifu genome v1.2.
AAAACAAATATAGAACAAAAATAAAAGTCATGGACAAAAAAAACAAAGAAAATGGTGACTAGCTGCAACAGCATATCAGT TATCTCTCTATCTACTGAAATGTCAGCTACTCTTACAGGTTCAAGCTTCCTCTTCCGACACCCCACCACCACAAGCTTCC ACTTCTCAGTTTCAAAACCTAATGTGGTTTCACAGTCACTACCTTCATTCTCTTCTTCTTCCTCTTCTTTTCTATCTCAC AAATTCAATCCTGTTCTGCGTCCCTGCAAGTGTTCCTACACTGCCCCTGTTCCGACCACAACCTACGAGGTACCCCTCTT CCCTTTTCAACCAATCTCCTCTTTCTCTTTGCAAAGTTCTTATCTTTCTCCAACTGGGTTAACAATAAAATGCAGTTTTC TGATGGGTCTTCAGAGATGGAGCTAAGATTAAACATAGGAGGCTTGGATATACAAAGCACCAGAGACATATCGGTTGATG CAAACGATTCCTCTTTAGCTATCAAAGTTTTGCGTTCAGGGTCTCCCCTCACATTGATTGAAACTAATCCTCTTTTTGAC AGGATTAAACCCTCTGAGACAATATGGTTTGTTTGTGCAATTGGAAGTGCTTAATTTTGATTTTGGTTTTCAGAATTAGA TTTTTTTTTAGCACTTTCTTTCTTTGCTGAATGAATGGTCTGATTTTGGATAGGTATATAGATGAAGATCAGCTGGTGGT GAATTTCAAGAAGCAGGACCCTGATTTGAAATGGCCTGACATTATGGAGTCATGGGAATCACTTGCTGCAGGATCTACAC AGCTTTTGCAAGGAACATCGATATATCTCGTTGGCGATTCCACCGAAATCAACCAGAAAGTGGCTCAAGAGCTCGCTATT GGTCTCGGGTACTTTAAGTTCATTTGTGATTCTAATTATCAATGTTCCTACTGCCCAATAACATGTGAAATTGTGAACCA TATTGTGAATTTCACATATCAAGCTATAGCTATATTCACAATGCTAGTAACTCCTATAAGCTTTTATGGATACATGATTA TATCAATCGATGCACTTTTTTTTGTGTTAGATGGTTATGATTGATGTGTAACTCCTGTCAATGGCTCATAAATCTTAGTG CTTTATATTCTTTTCAGGTACACACCGCTTAATACAAAGGAGCTGCTGGAAGCATATACCAAGCAAACCGTGGATTCATG TGAGTATTATGTAGATGTCTTGTTTTTCTTTGTCATAGCTTTCTCTTTTCCCTCCCATGCTGTAACTTCACTCGATGCAC TCCTGTGATTGATCCTCATTGTATTAGGGTATTCCTTCTGAACATACAAGAAAGACATCAAGTTACTCTATACTAAGACC ATTCATCAACTTTAGCATCTTTGATACTACTAATAAATCTCTAGGATCAATCATAAGAGTACCTACAATGGTGTCTGACA ATAGTATAGTTCATTACAGTTTTTTAGCTGCTATCGTAACAGTGAAAAAACTGAAGCAATGTGCCAATTCTGACTTGTTT TTTAGCATATGCATAATCAGCATCTTATGGTAACTGCTGATTTCTGGTGCTACCAGTTTGTAGCGTTCTGTATGTTTCCT CTATGGACAACAATATGTTAAAAGTGGACAAAAGAGTTTGTTTGTTACAATCACTGACAATGCTGTTTGCTTGAACTGCT GTCCATCAAGCACATATTGTACATATATATATATAAAGTCATATATCCTTGAGCACTATTTGTTCTCTGTTGTCCTTGCT GCAATTTATGTGTTGTATTTTCAACAATCAATTTTCTTTACTCAAACCCCCTCCCAAAACTCCAAAGTGGTTGGTCATGG TAGAAGTTGTTGTGACCACGGGTGAACTTTACCTAGTTTGTCAAGGGTTTAAATCCTGGAATCACTACTCTTCAAAGAGT TCAACCTTAGTTCTAGGGGTAATTTTACAAGTCTACTTGTGAGGAATCTTGGTCAAAAACCAAAACAAAACCCCTCCAAT CCATTAAAGATATTTCTGTGGTGATGCATCTTATTTTAATACAAGAGGATATGGCTGCAACACGTGTATGCATTTCAGTA ACTGAAAGGACTTTAATAGTATATCTTGCAGTGCATTAACAAGTCTAATCAATTCCAGGGCTGCTTGCTGAAGGCCCTGA CTCAGTAGCAGAAGCTGAAAGCTCCGTACTTGAAAGCATAAGTAGGTAAGTCAATGGAGTCGCTTCATTAATAGTTTTGT TACTGGGAACTAACACATTTATTTCCATTTCTGCTTGGTCTGCCAGTTATGCAAGGGCAGTGGTTGCAACGTTAGGAGGG AAACAGGGTGCCAGTCGAAGATCTGATAAATGGCAACATCTTCATGCAGGATTTACGGTCTGGTTGTCACAGACTGAAGC AACAGGTGATTTTTTGTTGATCAATTCTTGGTTACTTTTTGCAAGATGTGTCTGGTCCAACTTTGTTTTGAGCCTTCATG ACTTGGAACTGAAAAGAGATGAGCCACCTGAGCCCCGACTTAAATCTTGAAGAAACTTTTACCGCTAATAAGAGTATATT TGGATGGGGGATTTTGGAGGGGCTATATGAGCGGAAGAGTGTTGAAGCCAAGACTGAATGAACCTCTTCTAGATAACATT TTCAAATAAACGTCATCTTTGTTTGAGAATGTTTTAAAATGAGGGGGATATGAAATTACGTGTAACTCCTAAGTACCTTC CCTTATTAATTTTTATAAACATGTTATTCCACCCATCTGGAGAACTTTGGAGGATTTTAAACATCCAAACAAGGGGAAGG ACACTTATTAATTCACCTTTCATAGACTTCCCTCCCTCCCTATTCATTTTCTTTTGATTCCTTCCCCTCCCGGCTCCCAT ATATACCCACCCTTGTCTAACTAGACATATCACTAATATGATTACATCGGCTTATTGTTTCCATAAAAATATTATCTTCA TTGCATGAAATACAGATGAAGATTCTGCAAGGGAGGAGGCCCACAAAAGCGTCAAAGATAGCACAATTGCATACACAAAT GCGGATGTGGTTGTCAAGTTTCAGGGCTGGGATCCTGCGTATGTCAAGAGTGTAGCACAAGCATGTTTGAGAGCCCTAAA ACAGTTAATCCTGTCAGACAAGAAACTTCCAGGTACTTCCACTGATTTATTAGTGAATTCCATGCTCTCAGATAGGTCCA AGAACTGCCATGTGCCATTTCATTTGACTAGTCAAAACTGTTTAACTAAAAAGCCATCTTAACACATGTGATTTTTAGAT GAGATAACTTGGATAGCTGCTTTTCATTGAGATTAAGGTTTAATTTTATGGGATGAAAATGAAATAGGAAGGTTTAAAAT GAGGAGTGTAGCAAGTCATTGAGAAGGAGTAAGAATGGATTGAGCATTTTATAAATGGTTGAAGAAGGAGGGGGGAGTTT TAGAATTAAGGTAGGAAGCATAAACATTTTATTAGCCCATATGATTGACTTCATCTGTCACCTTGCAGGTAAAAAAAGCC TCTACATAAGATTGGGATGTCGTGGCGATTGGCCAAACATCGAACCCCCGGGTTGGGATCCATCAAGTGAAAGTGATGTC ACTCTTGGCACGCAATAGTGATTCTTGTAATTGGTAACATGAAACTTGTTTATGCAAGTTTGTCTATCAATGGAGACAGA AAAAATGAAGTTTATCTATCAAAAAGGTAATGTAAGTGGTAGCTTCATTGATTCAAGTGTTATTCTAGGCGGAGATATTA AATGTTCATATCATAAAATTATATAATAACAAAATAAATCTACATGGACATAATGATGACAAAATTCAACGTCTACTGAT GAAGCTTAAAGAAGCAAACATTCAGATATAATAGCATTAATGTAGAGATAAAAAAAGATGTAATAGAAAGAAAGTCCTTT ACGCTTTACTTGGAATCCCAATCCAGAGCGGTATTTCTATACCCGAACAATGGATATTTGGCTTTAGAAGTGCAAAGATT AAAATAAATTTTTTAATCTTATTTGCTTGCTTGGAAATCTCCCAAACCAATTCTCAGAATCTCAGTCCTTATCCTGCATT CCGATGATAATCACTTTTGGCTAGAGAAACCAATTCTCAGAATCTCAGTCCTTGTTGCTTTTTTCAACCATTTAAAACAA AATAAAAATAAAAATTGGCCTGCATTTGGTTAGGCAAAAACTAGGAACAGGGCAACTAACAAGGTAGCACCAAATTTTGA TATCAGGAAATGAAATTCTCTTGTTTTTCAAAAAACAGAAGATTGTTAATACTAAATCTTAGTACTTTTCTCACATTAGG CAGTAGACAATTCTCAATTTACTGGAGCTGTGGAATTGAACTCCATAAAGCTCTACCAGTGACCAAAAGATTCACCAATT AACTTTCTAGAAA
CDS sequence (LotjaGi3g1v0354400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGACTAGCTGCAACAGCATATCAGTTATCTCTCTATCTACTGAAATGTCAGCTACTCTTACAGGTTCAAGCTTCCT CTTCCGACACCCCACCACCACAAGCTTCCACTTCTCAGTTTCAAAACCTAATGTGGTTTCACAGTCACTACCTTCATTCT CTTCTTCTTCCTCTTCTTTTCTATCTCACAAATTCAATCCTGTTCTGCGTCCCTGCAAGTGTTCCTACACTGCCCCTGTT CCGACCACAACCTACGAGTTTTCTGATGGGTCTTCAGAGATGGAGCTAAGATTAAACATAGGAGGCTTGGATATACAAAG CACCAGAGACATATCGGTTGATGCAAACGATTCCTCTTTAGCTATCAAAGTTTTGCGTTCAGGGTCTCCCCTCACATTGA TTGAAACTAATCCTCTTTTTGACAGGATTAAACCCTCTGAGACAATATGGTATATAGATGAAGATCAGCTGGTGGTGAAT TTCAAGAAGCAGGACCCTGATTTGAAATGGCCTGACATTATGGAGTCATGGGAATCACTTGCTGCAGGATCTACACAGCT TTTGCAAGGAACATCGATATATCTCGTTGGCGATTCCACCGAAATCAACCAGAAAGTGGCTCAAGAGCTCGCTATTGGTC TCGGGTACACACCGCTTAATACAAAGGAGCTGCTGGAAGCATATACCAAGCAAACCGTGGATTCATGGCTGCTTGCTGAA GGCCCTGACTCAGTAGCAGAAGCTGAAAGCTCCGTACTTGAAAGCATAAGTAGTTATGCAAGGGCAGTGGTTGCAACGTT AGGAGGGAAACAGGGTGCCAGTCGAAGATCTGATAAATGGCAACATCTTCATGCAGGATTTACGGTCTGGTTGTCACAGA CTGAAGCAACAGATGAAGATTCTGCAAGGGAGGAGGCCCACAAAAGCGTCAAAGATAGCACAATTGCATACACAAATGCG GATGTGGTTGTCAAGTTTCAGGGCTGGGATCCTGCGTATGTCAAGAGTGTAGCACAAGCATGTTTGAGAGCCCTAAAACA GTTAATCCTGTCAGACAAGAAACTTCCAGGTAAAAAAAGCCTCTACATAAGATTGGGATGTCGTGGCGATTGGCCAAACA TCGAACCCCCGGGTTGGGATCCATCAAGTGAAAGTGATGTCACTCTTGGCACGCAATAG
Protein sequence (LotjaGi3g1v0354400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTSCNSISVISLSTEMSATLTGSSFLFRHPTTTSFHFSVSKPNVVSQSLPSFSSSSSSFLSHKFNPVLRPCKCSYTAPV PTTTYEFSDGSSEMELRLNIGGLDIQSTRDISVDANDSSLAIKVLRSGSPLTLIETNPLFDRIKPSETIWYIDEDQLVVN FKKQDPDLKWPDIMESWESLAAGSTQLLQGTSIYLVGDSTEINQKVAQELAIGLGYTPLNTKELLEAYTKQTVDSWLLAE GPDSVAEAESSVLESISSYARAVVATLGGKQGASRRSDKWQHLHAGFTVWLSQTEATDEDSAREEAHKSVKDSTIAYTNA DVVVKFQGWDPAYVKSVAQACLRALKQLILSDKKLPGKKSLYIRLGCRGDWPNIEPPGWDPSSESDVTLGTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 64 | 387 | 324 | 1.3E-145 | – | |
| PANTHER | 64 | 387 | 324 | 1.3E-145 | – | |
| SUPERFAMILY | 74 | 178 | 105 | 1.2E-12 | ||
| Gene3D | 75 | 181 | 107 | 1.6E-10 | ||
| ProSiteProfiles | 80 | 174 | 95 | 10.81 | ||
| Pfam | 84 | 163 | 80 | 6.7E-4 | ||
| CDD | 109 | 173 | 65 | 9.87493E-9 | – | |
| Gene3D | 182 | 359 | 178 | 9.6E-13 | – | |
| Pfam | 206 | 292 | 87 | 4.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0354400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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