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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0356800 |
| Transcript ID | LotjaGi3g1v0356800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT3G15780.1 transmembrane protein; Swiss-Prot: sp|Q3SWY4|LRN4L_BOVIN LRRN4 C-terminal-like protein; TrEMBL-Plants: tr|I1KVE8|I1KVE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0356800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73861412..73865912) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAGCCCAAAATAGTAGCACCCACTCTTTTTCCAGAAAACCGATATAAACTGAAACAGAACCAGAGTCATTCGTTTT GGTTCTTGTTCTTTGAAATGAAATGCCACCAAATGGCTCTTCTCTCAGTCACCACCACGAACCTCTCTCTTTGTTTTAGC CCTCTCTCACGTTCTTCCTTCTCCCTCTCAATCCCTTCTCAAATTCCATTTCAACCAATCTCTCGTTCCTCCCCTGCCCA CCGTCTTCCCAGGTGCCGCGCCGCCGCCCCCGACCCTCCGCCGCCACCCCGCGATGACCCACCTCCTGGTAACGATTCTA CCCACCTTATAGTTTTCATCTTTAATCCCATACTTTAGTTTCCCTTGATGTTTTTGTTAAAAATTATTTATTTAATTTTT TGTATGTGAAGTGCTTGACCGTGCTTCTATCAAGCAATTTGTTATTTCCTTCCATGTGAGACTATTAGAATAGTATCTGA CTTAGTTGTGTAGTTTTAGTTTCATTGGTAAGAATTAAGATGAAGGTTAAGGGGGTTACTTTTGGTCAATGATATAAATT TTAATTATCTTTTTCATCTAGGGAAAGGGAAAACAGTTTTAGGATCTCTTTGATATGTGAAATTTTATTATTTTCTGTTT TTGTGATAAAATTTGCTAAATGGCAGTATGATTATATGCTTGTTTTATTTTTCAAAGATTTGTGAAAAGGAAACAAGCTG AAATGAGATGAGTTTTTGAAATTATTACTATTAACAAGAAATGGAAAGAAAAAACCATTCTCAAAGGAAACAAACCTAGT TTTTTAAGGGAAGATGGATGATATTCAATCACATAATTGTCATCAGCCATCAGTATTTACAACGCCACGACCTTTTGCAC CTTCTGCTCCTATGTTGTTGAACTATTTCTGTAGCCGCTGTGTTATTTCGGACGGTGCTACCCCATCATGCTTGGAGGTT GGTCTTTGATGATCAAATTTTATTTGACGAAATGTTATTAGGTTTTCAATCTTTGATGGTCAAGGGATTTGTTTGTTTTC CTGAGCATAAGTATAGCTGATATGATGTTTGTTCTCATAAAGAGATGCTCAAATTCAACCTGGAAAATAATTTTCAGTTT TGAAAGTGATTAGCTAACTCTAGATATTGAGATTCAAGTACCTAAACTAGCTCAGAGTCTCAGATGGGGTCACTTCATGA GACAAAATTATTTGAAATGGTCTGTCGTCTGGTGTAGCATTGAGTAATGTTAGATAAGAACTAGTTTTGCATTGCTTTAT TGTTGAATCAACTTTATGTTTTTTCAGCTATACTTTTATTGTATGGAATGTTGATTTTATTCTGTTGCATATAGTATGCT GGGTGCTTTGGGTTATAAAGGCTTATTAATTTACATAGCTCTTGCATGTATACTCATTGTCATAATGTCCTTAGAGTATT ATTGTGTAGAATGATGCTCATAGTCATACATTGTTGTATAAAATTTATCATGTGCTCGATTTCTTTCATTTGTTTTAATT CGGCATTTATGCTTCTATAGCAAGTCTTAGCTTTTGGTCTAGATAAGAATCATTTTTTTTCTTATGTACCAGATCTTGCT GCATCTTTATCCAAACTTCAGGATAGAGTACAGATCTTCTTTGCTGTGCTGTTCTGGATGTCTCTGTTCTTTTGGGCTTC TGCCTGGGATGGGAGAAATAGACCAAACAAGGGATCAAGATTTAGAAGATAAAATAGTAAGCATTTAATTTGTATATATC ATATTATAACTTAGGGTGACAGAATTATACTGTAAAAGAAAAAGTAGTTGAATGTGTTCATTGTGCTGAATGAATGTTCT GATTCTCCATAAATATTCTGCTCCAAATATTCTGCATTCTAAAATTTATCCAGTCAGATGTAATTTATGAATAACCATCC CGGTTTTCATTTCCTTCTTTGTACTGCATTGGATGACAAGATGTGTAAAACTGAAGCTATATCCAAATTTGAAATGTCTA TCCTTGTTGTAATGGTTGGAGGTTTTACCGTGTGACACTGTGACTAAGAGCGTCACAGGTTCAAGCTGTGGAAACAATCT CTTGCAAATGCAAGATAAGTCTGTCTATAATAGACCTACAATAGTTGCACCCTTCCCTAGATCTTGGCATGGTGGGAGCT TTATAGCACCGTGTTGTCCTTATAGGATTCATACTGAAGAATGGAGTTACTTGTAGACAGAGGTAGCATCGTAGCAGTGA AACTTGTAATATTTTACTCGATGTCCTTACAATGAAGTTTCTCAACTTGTTTTATTAATTAAAATCACATAGAACCATAA AGCTTAATAAACTTTTATTTCTCGAAAGGGAGAATTTAAACATATATTTGTGGAAGCATTTTACCATTATTGAAGTTGTC AAGGCAAGCTAATGTTCTGTTTGTCCGTGTGTAGTAATGATGGGGGTTAGATTGTAAGCTAACGATAGTTGACAGCATGG GAGTAAAATTGAAGTTACAACTCCATATACCGTTGTGATAGTGTTATGGAAACCTGACAATTTAGAGAAAATTCCCTCTT TTATGCTGAGACTGTTTTTGTAGTCTCCAAGTTCTGACTTCAAGTGCAATGTAAGTCTGTCTTCCAGTGATTGTTCTTGC TATCAATTTTAGCCGTGCCTAGTTTTGATAGCTTCAAGCTTCAAAAGCTTAAATTTAAAAAATGTTTCTCCCCTCTTTTT GAGTGGACAAATGTTTCCTTTAATAGTGATTGATGGCTTCCCGTTTAGACGAAACTGTGAAATCCTGAATGAAATTTTGA ATGGTCAATTGATATAAGGTTCAGGGTATAGGGTCAAGGTTACGGTTTTAGGGTATAGGTTAAGGTTTCAGGGAATAAGG TTAGAGTTTAAAGTTTGGGTTTGGGGTTATGGGTTTGAGTTTGAGGTTCGTAGTTTAGGGTTATGATTTAGGGTATAGAG TTTAAGCCTAGGGTCGTGTGTTTAGGGTTATGGTTATGGTAAGGGTTACGGTGTATAGTTTAGGGTCATGGTGTAATATA TTGATTTTAAGGTTTGAGTTCTGGGTCAGGGTTATGGTATAGAGTTTAGGGTTAGGAAATAGGATCAGGGTGAGGGTGTT AGGGTACAGTTTCAAGTTTAGGGTATATGGTTAAAGTCTAGATTTTTATAGGTTAGGATTTATGATTTAAATTTACGGTT TAGTGTTTAGGCTTGGGTTAGGGTAATAACTAATAGGGTTTGGGTACAGGGTTAGGGTACAAGGTATAAGTTTAAGGTTA GGGGTATAGTTTTAAGATTTAGATTATGGAGTTTTGAGTATAAAGTTTGAGGTTTATGGTATTTGGTTTAGGGGTTATGG TTTGGGTATTGTGTTTAGGGTAGAAGGTTTTGGGTATAGGGCATAAGGGTTAGGGTATAGAGTTTAGGTTTATGGTTAAG GTTATAGTGTTTAGGGTAGTGTTTACGGTATGGGGTCACAAACATATGCCTTAGGAAATAAGAAATTTGTGTTTGAAATT GAAGTATAATTGAAAAAAAAATATAAAAATGAATTATTTAGCAGAAAGTAAAGGCAGTTGCTTCTGCATGGATATGATAA AATGAAGTCTTTGTACTCCGTGTGGGTGGTGGATGAACTCTGAGTCACTGAGTGTCTTCTTTTGCATTTGCTCTGAAATT GTTCTTTTTCTTCATTCATTCATTATAAAATGATATGCGAGGAGATGGGCTAGGACCAAATTAAGCACCTCTTTTTCGCT GTCAGAACTTCATATCAATAGTGGCTTGTTTATCGAACACATCTTGACAAGCTCGGGCATGGAGGATGTTGCAAGCCCCA TGGCAAGGGACTTCTCAAATAAAGCTTCCATTAAGAAACCACCCTCTTGATGAAATGGTGAAGCTTCAGGAGGCAATATT GGCACATAAGTCATTTCTGTTTGAGGAGGCCTCAAGTTTTTTTTTTTTTTTTAAGCCAAAGAATTGTATTTAAAAATAGC ACAAGGGATGCTAAACCCAAATACAAGAAAAGAAAGAAAGAAAAATAAAGAAAGAAAGAAAAAAATAAACAAAGTTTAAA GAACCCATCTACACAATCCAAACCAGATTAAGTTCCCTTACAAACTTAAACTATTACTCCAAATAAACCAAGAATGCCCC AACTTATAGCAGCAACATACAAACCCAAAAAGCAACCACGGCAACAGACGTCCAACGCCAAGAATGCACAGCAGAAGAGA AAAAATACAACCCAACCTCCACTCCAAACGTACCACGAACAATAGCCAAAAACCCATGTCCCTGGCAAAATTCAAAGAGA AGAGAGGCATATGATCGGATTTGACTTCCATTCATATAATGAATAATGAAACTCCCTCACTTTCTCTTTTAACCAATGCC AAGTTCGAACCTGGATTAATTCCACAACCAAACCACCGTCCCAAACACCATCCTTGAAAATAACACTGTTACGAGTTATC CACAAGGACCAGCAAGACGCC
CDS sequence (LotjaGi3g1v0356800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATGCCACCAAATGGCTCTTCTCTCAGTCACCACCACGAACCTCTCTCTTTGTTTTAGCCCTCTCTCACGTTCTTC CTTCTCCCTCTCAATCCCTTCTCAAATTCCATTTCAACCAATCTCTCGTTCCTCCCCTGCCCACCGTCTTCCCAGGTGCC GCGCCGCCGCCCCCGACCCTCCGCCGCCACCCCGCGATGACCCACCTCCTGATCTTGCTGCATCTTTATCCAAACTTCAG GATAGAGTACAGATCTTCTTTGCTGTGCTGTTCTGGATGTCTCTGTTCTTTTGGGCTTCTGCCTGGGATGGGAGAAATAG ACCAAACAAGGGATCAAGATTTAGAAGATAA
Protein sequence (LotjaGi3g1v0356800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKCHQMALLSVTTTNLSLCFSPLSRSSFSLSIPSQIPFQPISRSSPAHRLPRCRAAAPDPPPPPRDDPPPDLAASLSKLQ DRVQIFFAVLFWMSLFFWASAWDGRNRPNKGSRFRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 7 | 14 | 8 | - | – | |
| PANTHER | 11 | 116 | 106 | 1.7E-39 | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 82 | 63 | - | – | |
| MobiDBLite | 41 | 74 | 34 | - | – | |
| MobiDBLite | 55 | 70 | 16 | - | – | |
| TMHMM | 83 | 102 | 20 | - | – | |
| Phobius | 83 | 102 | 20 | - | – | |
| Phobius | 103 | 116 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0356800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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