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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0357200 |
Transcript ID | LotjaGi3g1v0357200.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phospholipase D; TAIR: AT3G15730.1 phospholipase D alpha 1; Swiss-Prot: sp|O04865|PLDA1_VIGUN Phospholipase D alpha 1; TrEMBL-Plants: tr|I1KVD8|I1KVD8_SOYBN Phospholipase D; Found in the gene: LotjaGi3g1v0357200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73906829..73909455) extracted from Lotus japonicus Gifu genome v1.2.
TGCAAGCATATGTTGTTTCTGTTGATTATTCATATGCATATTCACATACATATACATACATGCACATGGAAAAATTAGAA TATTCAATTGCTTTAGTTTAGTCTTACTCTTTTATTTTCCTTATTCACTATTATTGACGCATTTAATTCTTATTCTACTA CAGATCAAGCAAAACTTTGAGGAAACTGTTGGTTTTGGAAAGGGAGTTACTAAACTCTATGCTACTGTTGATCTGGAGAA GGCAAGAGTGGGAAGGACTAGAATTATAGAAAATGAAGAGAGTAATCCCAGATGGTATGAGTCTTTTCACATTTATTGTG CCCATCTGGCTTCAAATATTATTTTCACTGTGAAAGATGATAATCCCATTGGAGCAACTTTAATTGGAAGAGCATATGTT CCTGTTGAGGAGGTCTTGGATGGTGAGGAAATTGATAGATGGGTTGAAATCTTGGATGGGGATAAAAACCCAATACACGC GGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCACAAAAGACCGCAACTGGGCTCGAGGCATTAGAAGTCCTA AATATCCTGGAGTTCCTTATACTTTCTTCTCACAAAGGAATGGTTGTAAGGTATCTTTGTACCAAGATGCTCACGTGCCC GATAATTTCATCCCTAAAATACCACTTGCTGGAGGCAAGACTTATGAGCCTCATAGGTGCTGGGAGGATATTTTTGATGC AATCACTAATGCAAAACATTTGGTATACATTACTGGTTGGTCTGTTTATGCTGAAATTTCCCTGGTAAGGGATTCTAGGA GGCCAAAGCCAGGGGGTGACGTAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTTAAAGTTTTAATGCTT GTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACCGCGCAGTT CTTCGAAGGCACTGATGTGCACTGTGTTTTATGCCCCCGCAACCCTGATGATGGCGGTAGCATCGTTCAGGATTTACAAA TTTCCACTATGTTTACTCATCACCAGAAGATTGTAGTGGTGGACAGTGACTTCCCAAGTGGAGGGTTAGATAAGCGTAGA ATTGTGAGTTTTGTTGGGGGTATTGACCTTTGTGATGGAAGATATGATACTGCCTTCCACTCCGTTTTCAGAACCCTGGA CACAGCGCACCATGATGATTTTCATCAACCTAACTTTCCAGGGGCTGCAATCACAAAAGGTGGTCCTAGGGAACCTTGGC ATGACATCCACTCCCGGCTTGAAGGACCTATAGCTTGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAGCAAGGT GGGAAGGACTTACTTGTTTCCCTGAGAGAGCTTGAAGATGTCGTTATTCCCCCATCCCCAGTTATGTTTCCTGATGATCA CGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGGGCTGCTTTTGGATTCCCAGAGTCTCCTGAAGATGCTG CCAGAGCTGGGCTTATTAGTGGGAAAGATAATATCATTGATCGTAGCATTCAAGATGCTTATATTCATGCTATTCGACGC GCAAAGAATTTCATCTATATTGAAAACCAGTATTTCCTTGGAAGCTCTTTTGCCTGGAGTGCTGAAGATATTAAGCCTGA AGACATTGGTGCTTTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGCAAGATTGAAGCTGGGGAAAAATTCA CCGTGTATGTTGTGGTCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAGG AGAACACTGGAGATGATGTACAAGGACATCATTCAGGCCCTCAGAGCTAAGGGAATTGAGGAAGATCCTCGGAACTATTT GACATTCTTCTGCCTTGGTAACAGGGAGGTGAAGAAACAGGGAGAGTATGAGCCTTCGGAACAACCAGAACCTGATTCAG ACTATAGCAGAGCCCAAGAGGCCAGACGTTTCATGATTTATGTTCACACCAAGATGATGATAGGTAAGTTGAATTATTAA ACTTCCATAGTTGGTTAAAACAATCTTTCAAACTCAGCAATCTCATAAACTGGCACACTATTTTTATTTTGTCTTTATTG TCACAGTTACGTATATATATTTTTTCTTTGCAGTTGATGATGAATACATAATCGTTGGATCTGCCAACATCAACCAGAGA TCAATGGATGGTGCCAGGGACTCTGAGATTGCCATGGGTGCTTATCAACCCTATCATTTAGCTGCTAGGCAGCCGGCACG GGGTCAGATCCACGGTTTCCGCATGTCATTATGGTATGAGCACCTTGGCATGCTTGATGACTCCTTCAACAATCCAGAAA ATGAAGAATGTGTTAGGAAGGTGAACCAGATTGCTGACAAGTACTGGGATCTCTATTCCAGTGAGTCACTCGAGCATGAC CTTCCTGGACACCTGCTCCGCTATCCTATTGGGGTTTCCGGTGAAGGAGATGTCACTGAGCTACCCGGATTTGAGTTCTT CCCGGACACCAAGGCTCGTGTTCTTGGTGGCAAAGCTGACTACCTCCCCCCTATCCTTACAACTTAG
CDS sequence (LotjaGi3g1v0357200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACATGGAAAAATTAGAATATTCAATTATCAAGCAAAACTTTGAGGAAACTGTTGGTTTTGGAAAGGGAGTTACTAA ACTCTATGCTACTGTTGATCTGGAGAAGGCAAGAGTGGGAAGGACTAGAATTATAGAAAATGAAGAGAGTAATCCCAGAT GGTATGAGTCTTTTCACATTTATTGTGCCCATCTGGCTTCAAATATTATTTTCACTGTGAAAGATGATAATCCCATTGGA GCAACTTTAATTGGAAGAGCATATGTTCCTGTTGAGGAGGTCTTGGATGGTGAGGAAATTGATAGATGGGTTGAAATCTT GGATGGGGATAAAAACCCAATACACGCGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCACAAAAGACCGCA ACTGGGCTCGAGGCATTAGAAGTCCTAAATATCCTGGAGTTCCTTATACTTTCTTCTCACAAAGGAATGGTTGTAAGGTA TCTTTGTACCAAGATGCTCACGTGCCCGATAATTTCATCCCTAAAATACCACTTGCTGGAGGCAAGACTTATGAGCCTCA TAGGTGCTGGGAGGATATTTTTGATGCAATCACTAATGCAAAACATTTGGTATACATTACTGGTTGGTCTGTTTATGCTG AAATTTCCCTGGTAAGGGATTCTAGGAGGCCAAAGCCAGGGGGTGACGTAACACTTGGTGAGCTTCTCAAGAAAAAGGCA AGTGAAGGTGTTAAAGTTTTAATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGATTGATGGC TACTCATGATGAAGAAACCGCGCAGTTCTTCGAAGGCACTGATGTGCACTGTGTTTTATGCCCCCGCAACCCTGATGATG GCGGTAGCATCGTTCAGGATTTACAAATTTCCACTATGTTTACTCATCACCAGAAGATTGTAGTGGTGGACAGTGACTTC CCAAGTGGAGGGTTAGATAAGCGTAGAATTGTGAGTTTTGTTGGGGGTATTGACCTTTGTGATGGAAGATATGATACTGC CTTCCACTCCGTTTTCAGAACCCTGGACACAGCGCACCATGATGATTTTCATCAACCTAACTTTCCAGGGGCTGCAATCA CAAAAGGTGGTCCTAGGGAACCTTGGCATGACATCCACTCCCGGCTTGAAGGACCTATAGCTTGGGATGTTTTGTTTAAC TTTGAGCAGAGATGGAGGAAGCAAGGTGGGAAGGACTTACTTGTTTCCCTGAGAGAGCTTGAAGATGTCGTTATTCCCCC ATCCCCAGTTATGTTTCCTGATGATCACGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGGGCTGCTTTTG GATTCCCAGAGTCTCCTGAAGATGCTGCCAGAGCTGGGCTTATTAGTGGGAAAGATAATATCATTGATCGTAGCATTCAA GATGCTTATATTCATGCTATTCGACGCGCAAAGAATTTCATCTATATTGAAAACCAGTATTTCCTTGGAAGCTCTTTTGC CTGGAGTGCTGAAGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTTA GCAAGATTGAAGCTGGGGAAAAATTCACCGTGTATGTTGTGGTCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCA GTTCAGGCAATATTGGACTGGCAGAGGAGAACACTGGAGATGATGTACAAGGACATCATTCAGGCCCTCAGAGCTAAGGG AATTGAGGAAGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGTAACAGGGAGGTGAAGAAACAGGGAGAGTATGAGC CTTCGGAACAACCAGAACCTGATTCAGACTATAGCAGAGCCCAAGAGGCCAGACGTTTCATGATTTATGTTCACACCAAG ATGATGATAGTTGATGATGAATACATAATCGTTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAGGGACTC TGAGATTGCCATGGGTGCTTATCAACCCTATCATTTAGCTGCTAGGCAGCCGGCACGGGGTCAGATCCACGGTTTCCGCA TGTCATTATGGTATGAGCACCTTGGCATGCTTGATGACTCCTTCAACAATCCAGAAAATGAAGAATGTGTTAGGAAGGTG AACCAGATTGCTGACAAGTACTGGGATCTCTATTCCAGTGAGTCACTCGAGCATGACCTTCCTGGACACCTGCTCCGCTA TCCTATTGGGGTTTCCGGTGAAGGAGATGTCACTGAGCTACCCGGATTTGAGTTCTTCCCGGACACCAAGGCTCGTGTTC TTGGTGGCAAAGCTGACTACCTCCCCCCTATCCTTACAACTTAG
Protein sequence (LotjaGi3g1v0357200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHMEKLEYSIIKQNFEETVGFGKGVTKLYATVDLEKARVGRTRIIENEESNPRWYESFHIYCAHLASNIIFTVKDDNPIG ATLIGRAYVPVEEVLDGEEIDRWVEILDGDKNPIHAGSKIHVKLQYFDVTKDRNWARGIRSPKYPGVPYTFFSQRNGCKV SLYQDAHVPDNFIPKIPLAGGKTYEPHRCWEDIFDAITNAKHLVYITGWSVYAEISLVRDSRRPKPGGDVTLGELLKKKA SEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFEGTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSDF PSGGLDKRRIVSFVGGIDLCDGRYDTAFHSVFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFN FEQRWRKQGGKDLLVSLRELEDVVIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPESPEDAARAGLISGKDNIIDRSIQ DAYIHAIRRAKNFIYIENQYFLGSSFAWSAEDIKPEDIGALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGVPESAS VQAILDWQRRTLEMMYKDIIQALRAKGIEEDPRNYLTFFCLGNREVKKQGEYEPSEQPEPDSDYSRAQEARRFMIYVHTK MMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLAARQPARGQIHGFRMSLWYEHLGMLDDSFNNPENEECVRKV NQIADKYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGFEFFPDTKARVLGGKADYLPPILTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 1 | 787 | 787 | 0.0 | ||
SMART | 5 | 103 | 99 | 3.1E-10 | ||
PANTHER | 11 | 787 | 777 | 0.0 | – | |
PANTHER | 11 | 787 | 777 | 0.0 | ||
Gene3D | 12 | 137 | 126 | 9.5E-15 | ||
CDD | 19 | 127 | 109 | 1.02453E-56 | – | |
SUPERFAMILY | 20 | 129 | 110 | 7.32E-19 | – | |
Pfam | 23 | 106 | 84 | 4.6E-14 | ||
SUPERFAMILY | 130 | 425 | 296 | 5.65E-36 | – | |
Pfam | 305 | 343 | 39 | 1.3E-10 | ||
SMART | 305 | 343 | 39 | 0.0078 | ||
ProSiteProfiles | 305 | 343 | 39 | 11.058 | ||
SUPERFAMILY | 423 | 716 | 294 | 1.18E-29 | – | |
Gene3D | 460 | 681 | 222 | 4.9E-22 | – | |
CDD | 471 | 680 | 210 | 2.12541E-157 | – | |
SMART | 633 | 660 | 28 | 1.5E-8 | ||
ProSiteProfiles | 633 | 660 | 28 | 15.355 | ||
Pfam | 634 | 660 | 27 | 1.5E-7 | ||
Pfam | 705 | 776 | 72 | 1.2E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Phospholipase D activity | Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. | ||
Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Biological process | Phosphatidylcholine metabolic process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. |
Expression pattern of LotjaGi3g1v0357200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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