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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0357200 |
| Transcript ID | LotjaGi3g1v0357200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase D; TAIR: AT3G15730.1 phospholipase D alpha 1; Swiss-Prot: sp|O04865|PLDA1_VIGUN Phospholipase D alpha 1; TrEMBL-Plants: tr|G7JI50|G7JI50_MEDTR Phospholipase D; Found in the gene: LotjaGi3g1v0357200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73906829..73910303) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGCAAATTCTGCTTCATGGTACTCTCCATGCCACGGTCTTTGAGGTCGATAAGCTCAAATCTGGCGGTGGAGGCAA TTTTCTCAGCAAGGTAAATTTTTGGGCTTGTTTGGATCCTTTAGAAATTGGTGATTCAATATTTTTTTTTGTTTTTTTTT TGTTTTGACATTTGGATTTGAACTTGATGTGTTTCCATTTGTGAAGAAAATTCTTAAATCGAAGAAATCTCTTGACTGTG ATGGTTCTGTGGATTTAAGCTCAAAGTGGACCTTGCTTCCTTTGAAGGATCCAGAATTTGTTTGATTTTTCTTGTTTGAC ACAAAAATAAAGCTCCTGATCTTGTTTCATGTGATGATCAAATGATTTTTCATAAGGAATAGGAAGTCATTGATGATGGA ATTATGAGATTTTCCATGAACCTCAGTCAAATGATTCATCTGTTTAGATTTCTCATGATTTCAACTTTTGTACCAATAAG TCATTTTTTTGGTACTTCCAATTTCTAGAAACCCCTGCTTGACTTATGTATGGAAACAGCTTGTGCAGGTATTTAAGAAT AATGTTACCCGGTAATTGTAGTCAATGCGTCCCGACTCCCGAACCATATCTTTATCACAAGTTGCAATATAACTGCTAGC TCAACATGAATCAGATCATTGGCCTTTAGTTAAATTGCCTTGTGTTAATTCCACCGCTTTTTTACCACGATCATCTTATG GATCCTTTATTACACACATTTTATTGAAAAAAATCAGTTTAGTTATTGGATTTTGATTTAGTGGCTTCATACTTACCCAA ATCAGATCAAATCTTTTTAAGCATGAGCTGAAATGTGTAGCCTATCTCTGCAAGCATATGTTGTTTCTGTTGATTATTCA TATGCATATTCACATACATATACATACATGCACATGGAAAAATTAGAATATTCAATTGCTTTAGTTTAGTCTTACTCTTT TATTTTCCTTATTCACTATTATTGACGCATTTAATTCTTATTCTACTACAGATCAAGCAAAACTTTGAGGAAACTGTTGG TTTTGGAAAGGGAGTTACTAAACTCTATGCTACTGTTGATCTGGAGAAGGCAAGAGTGGGAAGGACTAGAATTATAGAAA ATGAAGAGAGTAATCCCAGATGGTATGAGTCTTTTCACATTTATTGTGCCCATCTGGCTTCAAATATTATTTTCACTGTG AAAGATGATAATCCCATTGGAGCAACTTTAATTGGAAGAGCATATGTTCCTGTTGAGGAGGTCTTGGATGGTGAGGAAAT TGATAGATGGGTTGAAATCTTGGATGGGGATAAAAACCCAATACACGCGGGTTCAAAGATCCATGTGAAGCTGCAATATT TTGATGTCACAAAAGACCGCAACTGGGCTCGAGGCATTAGAAGTCCTAAATATCCTGGAGTTCCTTATACTTTCTTCTCA CAAAGGAATGGTTGTAAGGTATCTTTGTACCAAGATGCTCACGTGCCCGATAATTTCATCCCTAAAATACCACTTGCTGG AGGCAAGACTTATGAGCCTCATAGGTGCTGGGAGGATATTTTTGATGCAATCACTAATGCAAAACATTTGGTATACATTA CTGGTTGGTCTGTTTATGCTGAAATTTCCCTGGTAAGGGATTCTAGGAGGCCAAAGCCAGGGGGTGACGTAACACTTGGT GAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTTAAAGTTTTAATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTT GAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACCGCGCAGTTCTTCGAAGGCACTGATGTGCACTGTGTTTTAT GCCCCCGCAACCCTGATGATGGCGGTAGCATCGTTCAGGATTTACAAATTTCCACTATGTTTACTCATCACCAGAAGATT GTAGTGGTGGACAGTGACTTCCCAAGTGGAGGGTTAGATAAGCGTAGAATTGTGAGTTTTGTTGGGGGTATTGACCTTTG TGATGGAAGATATGATACTGCCTTCCACTCCGTTTTCAGAACCCTGGACACAGCGCACCATGATGATTTTCATCAACCTA ACTTTCCAGGGGCTGCAATCACAAAAGGTGGTCCTAGGGAACCTTGGCATGACATCCACTCCCGGCTTGAAGGACCTATA GCTTGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGGAAGGACTTACTTGTTTCCCTGAGAGAGCT TGAAGATGTCGTTATTCCCCCATCCCCAGTTATGTTTCCTGATGATCACGAGACATGGAATGTTCAGTTATTTAGATCTA TTGATGGTGGGGCTGCTTTTGGATTCCCAGAGTCTCCTGAAGATGCTGCCAGAGCTGGGCTTATTAGTGGGAAAGATAAT ATCATTGATCGTAGCATTCAAGATGCTTATATTCATGCTATTCGACGCGCAAAGAATTTCATCTATATTGAAAACCAGTA TTTCCTTGGAAGCTCTTTTGCCTGGAGTGCTGAAGATATTAAGCCTGAAGACATTGGTGCTTTGCATCTAATCCCAAAGG AACTTTCACTTAAGATTGTTAGCAAGATTGAAGCTGGGGAAAAATTCACCGTGTATGTTGTGGTCCCAATGTGGCCAGAG GGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAGGAGAACACTGGAGATGATGTACAAGGACATCAT TCAGGCCCTCAGAGCTAAGGGAATTGAGGAAGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGTAACAGGGAGGTGA AGAAACAGGGAGAGTATGAGCCTTCGGAACAACCAGAACCTGATTCAGACTATAGCAGAGCCCAAGAGGCCAGACGTTTC ATGATTTATGTTCACACCAAGATGATGATAGGTAAGTTGAATTATTAAACTTCCATAGTTGGTTAAAACAATCTTTCAAA CTCAGCAATCTCATAAACTGGCACACTATTTTTATTTTGTCTTTATTGTCACAGTTACGTATATATATTTTTTCTTTGCA GTTGATGATGAATACATAATCGTTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAGGGACTCTGAGATTGC CATGGGTGCTTATCAACCCTATCATTTAGCTGCTAGGCAGCCGGCACGGGGTCAGATCCACGGTTTCCGCATGTCATTAT GGTATGAGCACCTTGGCATGCTTGATGACTCCTTCAACAATCCAGAAAATGAAGAATGTGTTAGGAAGGTGAACCAGATT GCTGACAAGTACTGGGATCTCTATTCCAGTGAGTCACTCGAGCATGACCTTCCTGGACACCTGCTCCGCTATCCTATTGG GGTTTCCGGTGAAGGAGATGTCACTGAGCTACCCGGATTTGAGTTCTTCCCGGACACCAAGGCTCGTGTTCTTGGTGGCA AAGCTGACTACCTCCCCCCTATCCTTACAACTTAG
CDS sequence (LotjaGi3g1v0357200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCAAATTCTGCTTCATGGTACTCTCCATGCCACGGTCTTTGAGGTCGATAAGCTCAAATCTGGCGGTGGAGGCAA TTTTCTCAGCAAGATCAAGCAAAACTTTGAGGAAACTGTTGGTTTTGGAAAGGGAGTTACTAAACTCTATGCTACTGTTG ATCTGGAGAAGGCAAGAGTGGGAAGGACTAGAATTATAGAAAATGAAGAGAGTAATCCCAGATGGTATGAGTCTTTTCAC ATTTATTGTGCCCATCTGGCTTCAAATATTATTTTCACTGTGAAAGATGATAATCCCATTGGAGCAACTTTAATTGGAAG AGCATATGTTCCTGTTGAGGAGGTCTTGGATGGTGAGGAAATTGATAGATGGGTTGAAATCTTGGATGGGGATAAAAACC CAATACACGCGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCACAAAAGACCGCAACTGGGCTCGAGGCATT AGAAGTCCTAAATATCCTGGAGTTCCTTATACTTTCTTCTCACAAAGGAATGGTTGTAAGGTATCTTTGTACCAAGATGC TCACGTGCCCGATAATTTCATCCCTAAAATACCACTTGCTGGAGGCAAGACTTATGAGCCTCATAGGTGCTGGGAGGATA TTTTTGATGCAATCACTAATGCAAAACATTTGGTATACATTACTGGTTGGTCTGTTTATGCTGAAATTTCCCTGGTAAGG GATTCTAGGAGGCCAAAGCCAGGGGGTGACGTAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTTAAAGT TTTAATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAA CCGCGCAGTTCTTCGAAGGCACTGATGTGCACTGTGTTTTATGCCCCCGCAACCCTGATGATGGCGGTAGCATCGTTCAG GATTTACAAATTTCCACTATGTTTACTCATCACCAGAAGATTGTAGTGGTGGACAGTGACTTCCCAAGTGGAGGGTTAGA TAAGCGTAGAATTGTGAGTTTTGTTGGGGGTATTGACCTTTGTGATGGAAGATATGATACTGCCTTCCACTCCGTTTTCA GAACCCTGGACACAGCGCACCATGATGATTTTCATCAACCTAACTTTCCAGGGGCTGCAATCACAAAAGGTGGTCCTAGG GAACCTTGGCATGACATCCACTCCCGGCTTGAAGGACCTATAGCTTGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAG GAAGCAAGGTGGGAAGGACTTACTTGTTTCCCTGAGAGAGCTTGAAGATGTCGTTATTCCCCCATCCCCAGTTATGTTTC CTGATGATCACGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGGGCTGCTTTTGGATTCCCAGAGTCTCCT GAAGATGCTGCCAGAGCTGGGCTTATTAGTGGGAAAGATAATATCATTGATCGTAGCATTCAAGATGCTTATATTCATGC TATTCGACGCGCAAAGAATTTCATCTATATTGAAAACCAGTATTTCCTTGGAAGCTCTTTTGCCTGGAGTGCTGAAGATA TTAAGCCTGAAGACATTGGTGCTTTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGCAAGATTGAAGCTGGG GAAAAATTCACCGTGTATGTTGTGGTCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGA CTGGCAGAGGAGAACACTGGAGATGATGTACAAGGACATCATTCAGGCCCTCAGAGCTAAGGGAATTGAGGAAGATCCTC GGAACTATTTGACATTCTTCTGCCTTGGTAACAGGGAGGTGAAGAAACAGGGAGAGTATGAGCCTTCGGAACAACCAGAA CCTGATTCAGACTATAGCAGAGCCCAAGAGGCCAGACGTTTCATGATTTATGTTCACACCAAGATGATGATAGTTGATGA TGAATACATAATCGTTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAGGGACTCTGAGATTGCCATGGGTG CTTATCAACCCTATCATTTAGCTGCTAGGCAGCCGGCACGGGGTCAGATCCACGGTTTCCGCATGTCATTATGGTATGAG CACCTTGGCATGCTTGATGACTCCTTCAACAATCCAGAAAATGAAGAATGTGTTAGGAAGGTGAACCAGATTGCTGACAA GTACTGGGATCTCTATTCCAGTGAGTCACTCGAGCATGACCTTCCTGGACACCTGCTCCGCTATCCTATTGGGGTTTCCG GTGAAGGAGATGTCACTGAGCTACCCGGATTTGAGTTCTTCCCGGACACCAAGGCTCGTGTTCTTGGTGGCAAAGCTGAC TACCTCCCCCCTATCCTTACAACTTAG
Protein sequence (LotjaGi3g1v0357200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQILLHGTLHATVFEVDKLKSGGGGNFLSKIKQNFEETVGFGKGVTKLYATVDLEKARVGRTRIIENEESNPRWYESFH IYCAHLASNIIFTVKDDNPIGATLIGRAYVPVEEVLDGEEIDRWVEILDGDKNPIHAGSKIHVKLQYFDVTKDRNWARGI RSPKYPGVPYTFFSQRNGCKVSLYQDAHVPDNFIPKIPLAGGKTYEPHRCWEDIFDAITNAKHLVYITGWSVYAEISLVR DSRRPKPGGDVTLGELLKKKASEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFEGTDVHCVLCPRNPDDGGSIVQ DLQISTMFTHHQKIVVVDSDFPSGGLDKRRIVSFVGGIDLCDGRYDTAFHSVFRTLDTAHHDDFHQPNFPGAAITKGGPR EPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDVVIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPESP EDAARAGLISGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSAEDIKPEDIGALHLIPKELSLKIVSKIEAG EKFTVYVVVPMWPEGVPESASVQAILDWQRRTLEMMYKDIIQALRAKGIEEDPRNYLTFFCLGNREVKKQGEYEPSEQPE PDSDYSRAQEARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLAARQPARGQIHGFRMSLWYE HLGMLDDSFNNPENEECVRKVNQIADKYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGFEFFPDTKARVLGGKAD YLPPILTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 808 | 808 | 0.0 | ||
| PIRSF | 1 | 808 | 808 | 0.0 | ||
| PANTHER | 1 | 808 | 808 | 0.0 | – | |
| CDD | 2 | 148 | 147 | 1.28566E-68 | – | |
| SUPERFAMILY | 6 | 150 | 145 | 1.89E-20 | – | |
| Gene3D | 7 | 158 | 152 | 2.8E-15 | ||
| SMART | 9 | 124 | 116 | 2.2E-14 | ||
| Pfam | 9 | 127 | 119 | 1.4E-14 | ||
| SUPERFAMILY | 151 | 446 | 296 | 5.97E-36 | – | |
| SMART | 326 | 364 | 39 | 0.0078 | ||
| Pfam | 326 | 364 | 39 | 1.3E-10 | ||
| ProSiteProfiles | 326 | 364 | 39 | 11.058 | ||
| SUPERFAMILY | 442 | 737 | 296 | 1.06E-29 | – | |
| Gene3D | 481 | 702 | 222 | 5.1E-22 | – | |
| CDD | 492 | 701 | 210 | 3.51568E-158 | – | |
| SMART | 654 | 681 | 28 | 1.5E-8 | ||
| ProSiteProfiles | 654 | 681 | 28 | 15.355 | ||
| Pfam | 655 | 681 | 27 | 1.5E-7 | ||
| Pfam | 726 | 797 | 72 | 1.3E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Phospholipase D activity | Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Phosphatidylcholine metabolic process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. |
Expression pattern of LotjaGi3g1v0357200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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