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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0357800 |
| Transcript ID | LotjaGi3g1v0357800.10 |
| Related isoforms 12 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G11170.2 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A072UHT1|A0A072UHT1_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi3g1v0357800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73999567..74004064) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATCATAATATGATAATGGTATAAAAACTCTTATTTTTAACAATTATAATTTGTGAATTATTAGATGAAGCCATAG GATTGCAATGTTTAATTTAAAATAGTTGTTTTATTTCTTCATTAGTCTTAACTCGTAAGGTTTTCTTGATATGCTATATG TATATTAATTTTTGGCTATAAAACATACAACACAATCTCTTGGAAATGAATTAATAATTTTGATGTCAAGTTTTTAAGCA ATGTTTTGAATTGTTAAACCCAAAACCCTAAATAGTATTTTTACTTTTGTGGTGCAGGGGTTATGTTGGTATACATAGTT CGGGATTTCGCGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCTATTGTAGATTCTGGATTTGAGCATCCTTCAGAAGGC AAGTTTCAGAATATCCTGTCATTATGTAACTTGGCATTGGCAGAGCATCATGTTTTGGCATTGATTTTTTTTCTCGTATA CTATATCTGCCTGCTTATATGTGATCAGTCCTGATATTCTGTTGCCAATGCTATCAGTCCTGATATCTTGTACTTTCTGT TTGTATTTTCAATTCATTGTACTATATGTTTTGAATTCATTTGAGCAATTGTTCAATGGATTCTTGGTGCTTTCTCCCTC TCTCTCTCTCTCTCACACACACACACACACAAAAGGGGTGAGTGGCTTGTTGATTGTTGTATGATTGAGTCTTATTATCA CATTTGATCCACTAAAGAATTGATTAAGTGAAGATAAATTTTACCAATGAACATGTGTTCTCTTGCTCTTTTATCTCCTT CCTTGCCTTTATTATGATTCTCTTCTAATCTTTATTTTATTTTTCTGCATTGACCAGGTAATCACTACTAGCATATTATG AATACGTCACGAAAATTGGTTGGTAAACCTTTACATTAAAAGGATCTGGCAGATCATATATACTTACTGAGGATTCGTCC ACTACAATTTTGTTTGCTTCTTCATCAGTGCAACATGAATGCATCCCTCAAGCAATTTTAGGAATGGATGTTATCTGCCA AGCAAAATCTGGGATGGGAAAGACTGCTGTGTTTGTTCTGTCATCACTTCAGCAAATTGATCCTGTTCCTGGTCAAGTTG CGGCCCTTGTTCTTTGCCACACGAGGGAACTAGCTTATCAGGTATGTCTACAATAATTTAAATGCAATATATCTGAACTG TTTTGCTAGAGTGATTTGTCTGATAAAAGTTTCCTAATTTGTACAGATTTGCCATGAATTTGAGAGGTTCAGCACATATC TTCCTGATATAAAAGTTGCTGTTTTCTATGGAGGTGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCC CATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGCATTT TATACTTGATGAGTGCGACAAGATGCTTGAATCACTTGGTCTCTTTCTTCCTCCTACTCGTTGTAGTTATTTTTTTTTGT GTGTGTGTCTTGTTTTGAACTTGCGAATTGCGATATATTTGATATTTTTTTCTGCTCTCCTTATTTATCACCACATCTGC TATTTTGCTTTTGCAGATATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAAGTGATGATGTT TTCAGCTACACTCAGCAAAGAGATACGACCTGTTTGCAAGAAGTTTATGCAAGATGTAATATTTTATTTATGTGGTGATT TTTTGACGGCATATGGTGGATGGATTTCATTGTTTCTCGTACTGCTCATATTGTTATTATTGTTGCATCACTTTGTTTCC CCTTTTTGTTAAATGCAAACAAAAGTATTACTTTTTTAAGCACTTTTGCTCGTTTTTTGTGCTTATATTTGTGAAACGTT TTGAATTTTTGGTATTTTCTATAGAAGTTATTACAAATATTATCTTGAAAATTATATTTGTTTCTTCAACGATATTATCT TCATCATTTTATTGAAGATCTTTTTTCTTTCAGCCCATGGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGG TCTTGTTCAGGTGTGTTTTGTTGACTTCGTTTTTCCTTCTCTAATTGATAATTTTTTTTTAATCTGTATATTAACTAATT TCTACTCATTTGCCCCCTTTTTCAGCACTATATCAAATTGCAAGATTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTG ATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAGAGTGTAAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTGGAG TGTAATTTCCCGTCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGGTACAAGCTCTTCTGCTAACTATCACTTTC AGGCTTTAAGAATTTTGTGCAGACATTTTGTCTTGTTCTTATTTTATATTTTGTATCTTTCTTTGCTGGATATTACTCTG GTTAAAGGCAGGGGGTTGCTTATCATTTATTTTTAACATGAGTAACATGATGTTACAGCCAAAATCTTCACTATTCTTGG ATCCTTTGATGTGAGTCTTTTGGGTACTTTTGATAGCTTGATCTAAGTATAAGGTTGCATACTTGTGATGGGTGAGATGA ACTTGCAGCATCAATTGAAGGGAGGGGAAGGAATTAGGAAAAAGATGACTGAAGATTTCAATTATGACTTCATGTTCTTT GGTTTTTAAATCTCTTGTGATATTTTACCAGCAAAGATCTGTCAAAATGTGCCTGTCCTTTGCTGAGTGAAATATTGGTC TAGGATCACAAAGTTCCTAAACAGAGTGAGATGGGCCAATTTCGTATTACTTTCTGGCTGTAATCAGGCCAGAAAAGGGC TGAACTTGCATTTAATTTGGATCATTGTATTCATATATAGCTGCATGGCTTTTTCCTGCAGGGATATAAACTTAATCTAG TAATTGCAACCTTGTAATCATAGTTATCAATAGCGGCGCGATGTCGCGTCGCAGCCCTTCCCCGCGACTCTGAATCACTC TGAATCAATCGCGTCATAGAACGCTGTCGCGCTGCGAATCGCGGCAAATTGCGGTGCTCCAGGTTGAAGATGGGTCGGAT CCAAGGAAAATCCCCAAATTGCCCTTAAATTTTAAATTTAGGTTAAAATTTGAGGGTACTTTTGGGATTTCACTCTTTGT AAGTGAAACGGCGCGTTTCACTCGTCTTCTTCAACGCGTTTCTTCTCTTCACGCGTTTCCTCTGCAATCTCCAGTGCGAC TTCCTTCAGCTCAGCCACCTTCGACCAGAAGTCCAGAACCCATGGCCACAACGCAATCTGACAAGCACCGTCCAGGCTCC GGCGACCACCACCCCTGTTTCCCTTGGGCTTCTGTTCTGTTCTGAGTTGCTCTGTTTTTTATCTTCTTTTCCTTTCTTTT CCTTTTTATTTATTATTCTGTTCTCAAAACATACTTCTCCAGTTCTTCTCCTCCAGTAGTCCTCTCTTCTCTATCATTTC ATCATGTTATGAATTTGAAGTTATATTTATCACTTCTTAGTAATTATATGTATATATTAATTATATAATATTATATGTGA AAAATCAAAATAGCGGTCATCCCGCTATCCCACTTTTGGGGTTGGCCGCTACGCGTCGCGATCCGGGATTGACTACTATG CTTGTAATATCATATCATAATAAAATTGATTTTGCCCGTTTCAGGTTGAAACGATACAAAGGTTTCAAAGAGGGGAAGCA AAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGATATAGAACGTGTTAATATAGTCATAAACTATGACATGC CTGATTCTGCTGATACTTATCTACACAGGGTAATTGCTTGATCCATATCATAAGATTTATTAATATTTTTTATTTCAAAA AGTAGTTTCTGGCATGCTGTTTTGGTATGCTCGAATGCTTGTAAATCACCTCTGCCCCTCATATCTTTAAATGCTTTATT GACATGTGAATTGGTAGGTTGGAAGAGCTGGCAGATTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGT GATTCTGAAGTTCTTAATCAGGTGAGGCCCAGTTTCATGGATGTTTAGGAAGAGCTTTTCTTTTGTTATGTCAGTTGAGA AAATGGAGGAATACAATGTCCTTTTCTGCATACGATGCATTCCTTAAAATGAAGTCTTATTTCAGGTGCAATCTCGGTTT GAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATAGTAAGAACTTTCTCCGTGCCTACTTGTTTAT GATTCATTCCATTTCATTCTGCTTTATTTTGGTATGCCTCATTCAGTTTGATTCCACTTTCCACTCATTCAGTTTGATTC CACTTTCCATTAGATGTTAAAACTTAGTCAAACGACCTCCGAGGTTTTTCCAGGTCATAAATGTAACATCTTTGTCATGT TCTGCAGTGCCAAACTGA
CDS sequence (LotjaGi3g1v0357800.10) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTCATTGTTTCTCGTACTGCTCATATTGTTATTATTGTTGCATCACTTTGTTTCCCCTTTTTGTTAAATCCCAT GGAAATATATGTTGATGATGAGGCCAAGTTGACCCTCCATGGTCTTGTTCAGCACTATATCAAATTGCAAGATTCAGAGA AGAATCGTAAGTTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAGAGTGTAAGCAGAGCA GCAGAATTGAACAAGTTGCTTGTGGAGTGTAATTTCCCGTCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGGTT GAAACGATACAAAGGTTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGGATTGATATAG AACGTGTTAATATAGTCATAAACTATGACATGCCTGATTCTGCTGATACTTATCTACACAGGGTTGGAAGAGCTGGCAGA TTTGGGACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTTCCGGTGATTCTGAAGTTCTTAATCAGGTGCAATCTCGGTT TGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACATATATGCCAAACTGA
Protein sequence (LotjaGi3g1v0357800.10) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFIVSRTAHIVIIVASLCFPFLLNPMEIYVDDEAKLTLHGLVQHYIKLQDSEKNRKLNDLLDALDFNQVVIFVKSVSRA AELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR FGTKGLAITFVSSSGDSEVLNQVQSRFEVDIKELPEQIDTATYMPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 191 | 175 | 1.9E-109 | – | |
| PANTHER | 17 | 191 | 175 | 1.9E-109 | – | |
| SUPERFAMILY | 38 | 198 | 161 | 1.56E-43 | ||
| CDD | 42 | 171 | 130 | 2.00978E-59 | – | |
| Gene3D | 43 | 206 | 164 | 3.0E-54 | – | |
| Pfam | 55 | 162 | 108 | 8.7E-29 | ||
| ProSiteProfiles | 57 | 202 | 146 | 22.664 | ||
| SMART | 81 | 162 | 82 | 3.8E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0357800.10, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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