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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0358000 |
| Transcript ID | LotjaGi3g1v0358000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alba DNA/RNA-binding protein; TAIR: AT2G34160.1 Alba DNA/RNA-binding protein; Swiss-Prot: sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160; TrEMBL-Plants: tr|I3S5V4|I3S5V4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0358000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74013018..74016354) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAATGCACTTAACTTTGTTTTTTGGTGAAGCAAATAATACTATGCCCTTAGACCTTAGTTTTTTTATTTTATTTTTA AAATAGTACTGTACTAATTAAGGACCAGTATAAATAAGCCCTAATTCCCTTCGTTTATTTCCCGCAAAGAATTGGATTTT GGGAAACACTCTTCATTCATCCATTAGGGTTTGTTCGCACACACAGCGATGGAAGCAATCACGGAGGCAGTGAACAACAT CGACATCTCCGATTCTTACAAGAAGAATCGCATTCAGGTTTCCAACACCAAGAAGCCCCTCTTCTTCTACGTCAATCTCG CCAAGGTAATTTTCATACATGATTTTCATCTCGATTTTCAATTTCAATTTTCTTCTCGTCAGTGTCATGTTTAATTTGAT CACTGTTTGCATTTGCAGAGGTACATGCAACAGCACAATGATGTTGAGCTCTCAGCACTTGGAATGGGTATTCAATCTTA TTTTTGTCCGTTTTTTAATGTGAAATCTTCCTGTTAATGGGTTTGATTTGAACACTTTTAATACATGATATCACTATGAC TGTGTCAGATTAGGCTTGTAACAAGTGTAAATGTTACATTTCGGAGCATGTAATTGTATAGGCATTCTTAGGTTGAACAT GTGGTTAAAGTGCTGTTTTAGCCTCTAGGTTTGTTTCTTTAGTTGCGTTGCGTCGCGTCTGTGACTTTCATTATATTTGG ATGTGTGTTTGGCACATACACTCCAAAGCACGTTTGCGGAGAAGCTTCATAGTGTTGCTTCTGTGTTAACGTGATTTTGA GGAACATGCACTCTGTCTTTCTCTAATTGGGCAGAGTGAGAATAGGAATACTCTTGTTGTCTAAGCCTGCTAGTGTTAGG ATCTGATGTCATTCTCAAGGAGTTTTACTCTGCTAGTGCTAAACTGCTAATGGCATCATATGTAAAGAGAAGTTGAGATT TGAGGATGAGTTACATAGCTTATGCATTGAAAAAAACGGCTTTTTTTTGTTTGAAAAAGCAGTTCCAAAGGGCCCTTCTG TTTATATTTATCCCTTGAGATAGTAGAATGACATTCAAAACTAAAATGAGGAGACTCAGAACATTTCATGACAGACTTGT GAAGGAGACTTTAAAGTAACTTGTTGACTTGGCTGTATGCTATTTTTATGTTTGTATTGGAAATGAGACTGTAATTAGAC AAGAGAAAATGCAAAGAATGAGAGTTGGTTGTGAGCCTTGAGTCTTGACATTGTCAATTTGTCTGAAGCATTACCTATTT CTTTCTTCTTTAACTTGGAATATACAAACCCCAAATATTGGGTTTGGAGCAAAGAAGGGTTGTTTTAACTTTTAAGTATG CTGTAGCCCTATAACCTTTTATGCTCAGTTTCAAAGTTTGTGCTTATAATGCCGGATGTAGATGTGTCCTCCATGCCTGT TTCAAACCTGAAGGTTGCATAAATTTGCTGCCGCATAACATCTTTGAGCTAGCAACCAGTCAGCCACAACATATACTTGG AAAATCTGCTTTTAGAGTTAGGATGAATTGTGTTGGCTATTTGTTGAACCCCACGTATCCTGGAAACACTTTACTTAAGA GATACATGTCTCTGTCTACTGACTTGACTACATTGAAGTTCTGCTCCGAAAGTGCCCTTCTGTTTTAAACTCCTATTTAT AGTCTTAATCTAGGACTAGGATTTAAGAGCGTGTGTGTGTGTGTGTGTGTATTTTAAACTAAAATGAGGAACACTCAAGA CTAAGGGTTCTATCTTTTTTTACTTTTCTCTCATGAAAACTTAAAACTATTTTTTTACTTCATGATTTGTATATTGTGCC CCTTTCTAGTACTACTATCTTTTCCTTGGTTATATTTTTCCTATTTCTGATTTCTTGTGTTATTTTGTTGTCACAGCTAT TGCCACTGTGGTTACTGTTGCTGAAATTCTGAAAAACAATGGGCTTGCTGTTGAAAAGAGTGAGATACTATGTCCTCTTT TTGTTGGAAAATGTTTCCCTTTCTCCTCTCTCTTTCTGGTACTCAAATGATTATACAAATAATTTGATTCCTGGAATCTT TATACAGAAATCACAACTTCAACTGTTGAGATAAAGGATGATTCTAGAATTAGACCTGTCCAAAAGGCCAAGGTAAGAGT GGAAACACAATCCTTGCTGACTCTAGAATATGTTTTGTCTGAATCCTTCCAATCTATGACTATGGATTCTGCTTTATGAC TTTCTTTTTAAGTTCTACACATGATGAATTGTGTTTTAGATTGAAATATTGCTTGGGAAGACCGCAAACTTTGATGAGTT GATGGCTGCTGCTGCGGCTACAGCTGCTGCTGAAGATGGTGAAAATGGAGATGTTGAAGAGGACACTGCTTGAAGTTCAT GAGTATCACACATGGATCGGATGAAAATATGTACTCTTTAACGACTTTGCGGTTGCGCGTGTGTTATCTGTAGTTAGCAG ACAAGCATAGAATTCATTATAGACTGAGACTCGATGTTGAACTACTTATTTGCTTCATTTCTTCAACTTATAAATAGAGG CTTTTTGTGTCTTCACTGTTGTTGGGTTCTCTTCATCGTTATACTAAAGAGAAGATGCATTTTCAGTTTTCACATTTCAT TACAGATATCCATGGTTTTACAATTGCTGATTACTAACATTGCTAATTGGATAGGGTTGCCAGGTAAGTAACTTAATTGT AAGTGTTCGGTTCTGTGAAATTTCCTTTTCATTAGCACAATATGAATCTTACCTATAAGAATAAATGAGAAAGGGACTTT TTTTTTTCGAAAAGAGAAAGGGACTCTATTCATTCACATTTTACTTTCTCTTCCATTATATTCTCACTCATTTTTTATCT TGCTCTTTTTTCCTATGACTATCATATCTTCCATTCATCTCTTTCTATTTCTATATCTTGCTGGGTGTATGTGTAGCTCG GGTGTCAACCAATACCACAGGTGCCTAGGATTTTCACAGAGCCAACCATTACCATCTGAGGGTGGGAGCAGCCAGTACAA ATATCTCATATATTTATGAATTTTCATCCTTTAGGAAGGATAACAATCATTGGATTATAAAAAAAGGCATCAACAAAAGT ACAAAATCTACATATTTCTTGTAAAATTAATATTCAATGCTACGCAACAAGAATGGTCCGAAGTTTAACTCTCTTTTTTT CTTTCCTGAAACTACAAAATTATTACTGAACTAAAATGCAAAGGAACTCCTTGCCTGAAATGGTCATAAAATAAATCATT TGCCCATGGGGATTTAACTCACTTTAGATTTGCAAAAAAGTAAATTGCTCCGGCCTG
CDS sequence (LotjaGi3g1v0358000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAATCACGGAGGCAGTGAACAACATCGACATCTCCGATTCTTACAAGAAGAATCGCATTCAGGTTTCCAACAC CAAGAAGCCCCTCTTCTTCTACGTCAATCTCGCCAAGAGGTACATGCAACAGCACAATGATGTTGAGCTCTCAGCACTTG GAATGGCTATTGCCACTGTGGTTACTGTTGCTGAAATTCTGAAAAACAATGGGCTTGCTGTTGAAAAGAAAATCACAACT TCAACTGTTGAGATAAAGGATGATTCTAGAATTAGACCTGTCCAAAAGGCCAAGATTGAAATATTGCTTGGGAAGACCGC AAACTTTGATGAGTTGATGGCTGCTGCTGCGGCTACAGCTGCTGCTGAAGATGGTGAAAATGGAGATGTTGAAGAGGACA CTGCTTGA
Protein sequence (LotjaGi3g1v0358000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAITEAVNNIDISDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNDVELSALGMAIATVVTVAEILKNNGLAVEKKITT STVEIKDDSRIRPVQKAKIEILLGKTANFDELMAAAAATAAAEDGENGDVEEDTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 1.7E-76 | – | |
| PANTHER | 1 | 135 | 135 | 1.7E-76 | ||
| PIRSF | 1 | 134 | 134 | 4.2E-59 | ||
| Gene3D | 18 | 128 | 111 | 3.7E-49 | ||
| SUPERFAMILY | 19 | 114 | 96 | 1.83E-25 | ||
| Pfam | 20 | 82 | 63 | 1.2E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0358000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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