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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0361600 |
| Transcript ID | LotjaGi3g1v0361600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT3G15540.1 indole-3-acetic acid inducible 19; Swiss-Prot: sp|P13088|AUX22_SOYBN Auxin-induced protein AUX22; TrEMBL-Plants: tr|I3SHP3|I3SHP3_LOTJA Auxin-induced protein; Found in the gene: LotjaGi3g1v0361600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74484874..74489938) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTCCCCACAATTGTTTCTCATTTGTCCGACCACTTGACCTGTCATTGTTCCCACTACCTTCTTTTCCATTCACTTTG CATATATATATAACTAAACCCTTTAATTTCTTCCATACTCAAAACCATTGATCTTTCAGCAAGCAAGAGAAAAAAGAAGT TATTATTTGTGAAGTAATTTGTTGAGAAAATGGCGAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTTTG CCTGGTGGGGAACGTATGAGTGACAAGAATGAGAAGAAGAGGGTGTTCTCAGAGATTGAAGGTGGCGGCGGGGATGAGAA TAGCCGCTCCGGTGAGCGGAGAGTGGAGAAGAAGAGTGAAGTGGTGGTGGGGTGGCCTCCGGTGTGCTCATACCGGAAGA AGAACAGCGTGAATGAAGCTTCAAAAATGTATGTGAAGGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTGACCTC AGCATGCATAAGGGGTATTCTGATTTGGCTTTTGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGGTGAGTTACATTC AATTATTTTTCTGTTTTTCTTTTCTTTTTTCTTTCCATTAATCTTTTTAAAAATCTTCAATCTTTCTAGCTTATAAATAT TTGTGGCATGGTCGATTTGCTCATGTGTAGCTAGGGTCATGCAAAATATACATGTGCAAAATTCATATAATATGTGCAAA GTAACATGAAAATATAGTCCTCATATATAGACTCTAATTCAGATGATATAATTTCAATGTAAAATAGAAATTTGAGTAGT AAATTTTTTAATAGTACCCATTTTTGTGCCCATTGTTGCTGGATCAACATACTAGTACATGGATCTAGGAGTATATATAG TTGATAAATTGTAACTGTCTATAACGGTTTTTATGTTGCTGGGTTTGTACTTCAACATTCAGGCATCTCTTTGTGCACAA ACCATGATTGCATCTTCTTGGGTACAACTTGTTCAATTCTCTAGTTTCTTTTAATGAATTCATTTTATTTATAAAGAAAA CTTTTTGATAGTTCCAATATGGGGTACTTTTCCTATGTTTTATGCAAGATAAACATATATATATTAATTGGGCACTAGAT TTGTATATAGTAGTACAGCATAACTGCATAAGGATCATGAAAAATAAGTTATATAATTAATAGTTATAGCCTTATAGGAA TTTCGAAGAGAGAGATTGAATTGATTTGTAAAGTGAGAGACCAGGTAGCATATAATAATTAGACATTCTCCTTATTGCGT GATGGGGCGTGCAGCTAATGTATGCATAAAGTTGAACTGGTGTCTTCATGACAAAAAATTTAGCATAATAGAATATTGGC TTAATTGCACTTTTACTCCCTGATCTTTCACCTTTGTGCGATTTACCTCCCTCATCTTTAAAATGAGCGAATTCCCTCCC TCTTCTATTAATATGTGCGATTTAGGCCCTTCCGTTAGTTAGCCGTCCAATTACTAACGGCGATTGCTATTTTCACCCTC CCTTTTACTAACCACACCCCCATATCAGAAATAAAAATAAAAATAAAAATAAAAAAAGGAGGTAAATTGCACAAAGGTGA AAGATCAGGGGGCAAAAGTGCAATTAAGCTAAAAAATAAAAAAATAAATGAAATAAATGAAATAAATTAAATACAATTAA TAGAAAATAAAAAAAAAACTGAAAAAAAATATTTTTATAAAAATCAAAGAAAAAATAATAAAATAAATGAAATAAGTTAA ATACAAATAATAGAAAATGAAAAAACATTTTTATAAAATAAAAAAAAAAGCTGAAAAAAATATTTTTATAAAAATCAAAG AAAAAATGTTTTTATAAATTCAAAGAAAATAAAATATTTTTTTTAATTGAAGGTAGAAATTTAAAAATAAAATAAAAGAA TAATTATTTTTAATTTAGTGTAGGTGGTGCAAATAGAAACAAATTCTTCTTTTATTTTATTTTTAAATTTCTATCTTCAA TTAAAAAAAATATGTTATTTTCTTTGACTTTATAAAAACATTTTTTTCTTTGATTTTTATAAAAAAAAATTCAGTTTTTT CTTTGATTTTATAAAAATATTTTTTCATTTTCTATTAATTGTATTTAACTTATTTCATTTATTTTATTATTTTTTCTTTG ATTTTTATAAAAATATTTTTTCAGTTTTTTTTAATTTATAGTTTTTTTTTATTTTCTATTAATTTTATTTAATTTATTTA TTTTATTTTTTATTTTTTTATTTTTATTTCTGATAAGTGGGTGTGGTTAGTAAAAGGGGGGTGAAAATAGCAACCACCGT TAGCAATTGGACGGCTAACTAACGGAAGGGCCTAAATCACACATATTAATAGAAGAGGGAGGGAATTCGCTCATTTTAAA GATGAGGGAGGTAAATCGCACAAAGGTGAAAGATCAGGGAGCAAAAGTGCAATTAAGCCTAGAATATTTGATAGATGCTG TGTCTAAATTATTCATGAACACTCGATTACAATTGGTTGAAAAATAACAAAATTATTAATTAAGTACCCCACAAAAGGCA ATATGAGTGATGAAAATTAATATTTGTTTGTTGGCAGTGGAAGCGTTGAAGGATGCGGACAAGTGTGAACACGTTCCCAT TTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGTAAGTCCTTCAGGCCCCTCCTTCTATTT TATTTGTACATTAAAATATATTTATATTCTTTTCAGAAAAATAGGTTATATATTGTTAAGATCCAATTATGTCAAAAGGT TGAACTGTTGGGTAAATGACGCATTTCTAACTCTCCCTCTGGCACAGAAGTTATTTGGGGTTGAAACATGAATAATACAT AAAATCATAAATTATATGCTAAAACTTAACTTTTTATTAGAAGAATTCTACTTCTTATTTAAAGAATTGGGGGCAGCAAT AATCGAACTCTGGACTACGTACTTAATGATAGAAGCTTTCTTGTACCATGTCATGAAGCTTGTTGAGTAAAAAAACACTT ATATTTCTAACATTTATATTATAACTATTAATTATTTTTTGTTGAATTTATTTGAAGATGGTAACATCAGTTCTTAGTTG AATATATTCACCTAAACTAAATATATATTCTTACACAAAAACTCCAGCTTAAGTTAAAATAATACAATTATATCAACCCT TTTTTCTTCTCTTAGGTGAAGAATTTATTTCTATTTTTCGAGACAATTGTGGTACTCATGTAGAGCACCACTGACATTTA CAACACACTCAAAAAAAAATAACGTCATTGGAATTTGTGATAACATAGATAGAAATGAAGTTGCATAAAGTGCTAAAGCA CTCTTAAAATGAGGGTGGAAAACTGGAAATCGATCACGTCTGTGGATAGTGTTAGATACGATCATACGAGTCAAGTAAAC CAGGAATACTTTTGTCTACTGTTATAAAGTCAGCTTCCCGTGTCTCCTGATCATCCACTACCACTGCCAACTAGTATATA TGATTCCATCTTTGAAAACTATGTGCTACGGAAATTTCGTTTACAATCTACTATATCATTATTATTGTATCTATATAAGG TTCTTACGTGCTAATTACTTAACTACCAAAAATATATGCATGCGTGCTTTACAATCTAAATCAACTCAACTAGCTAGACT AGTTGTCCCACAGATTTAAACTAGCATATAATTGTTTCCAAATTGTTATAATTGAAAATGAAAACAGAAACTTTTTTCTG TTAATAGAACCATATTCAAAAGAAGTTTCTTTCAATCCTTGGAGTTGGTATAATAGAGCATAAACGAGTCTCGTATGTGA CAAGTCTCATATTTGAACTAAAAGGTTTAAATTTGAAAGTTTTCTTTATCTTAAACTAAACTGGGACACCCATCTCTCAT CCTAAATTTCTATTACCAAGAAAAAAAATTCTTTCCTTTTTCAGAGACCCGAATTCTATAAAATTAAGCTTAATGTGGAA ACCTTTTAGCTTTATGTGATCCCCACTAACCCCATAAAACCGACATGCATGCGTGAATCCCTCCTTATAATGTTCAGCAC GTCAAATTGAAAAGGAGGAAACAATGATCCATGATGGCATGTCCGGAAAAGGGAAAGTCATCAAAATGATCAATCCAATA TTAACTTAATTTTTTTCTAAAGTAAATAATGAATTATGATGATTTTAGTCATATATATTTTCATAATCTTCCTTTTTGTG ATGTAAATTATTTATAGCTATAGTTGAAATACTCAATGTTTAATCATGAACTGTTGGTACTTTTCATTACAGAATGTTTA CCGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAAGGCTTCAGTCTTCAACAGAAGGGATCTTTAAAG GGATTCATAGAAGGCGCGGCAAAGTGAAAAGACATGTTGTTAGGCTTAAAGTAATTGATGTCGTGCACGTTTTAATGATC ATCAATACAAATTTATGTTGCCATTTTGTTTAATTTGAAGAAGCATTCCTTTATATAGTTTGATGAAAGAGTCAGAGTTC TGTTTCATGTTAATTATTATAATTATAGTGAAGGAGACATATAGGACCCTATCTAATTAATAGGGGAAACTCATATTAAT GTTTTGCCATATTTGGTAATTTTCAGTTCGCTACATTGCAACTCAATGTTTTGCCATATTTAGTAACAGAGTTTACGGTT GAACCACTAAATATGACTTGCTATAGCAGGTTACAATTTTGTGTCAATTTTTTTTGCTGGATGCAGTCGCATGGAGGAAG TCTCAAAACCACCGGAAGAAGGAGGAAGAAGCCAATGGCGGATTCCCCTTGTTGACAAGTTTATCCTTTCCTCATGTGCC TTCTTCATCCTTCCGCAAACAAAACCCCATGTCTGCCAATAACCCAACACGGTAGTGTTAGAATATAATATAAAATCATT GATGTGACTCTTACCCAACAGCTTAAGTTTTTGACATAAATGATTATTTGACATGGTATCAGAGCACTTATAAACGGTAG TGTAAACCTCACCTCTTGAACTAGC
CDS sequence (LotjaGi3g1v0361600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTTTGCCTGGTGGGGAACGTATGAGTGACAAGAA TGAGAAGAAGAGGGTGTTCTCAGAGATTGAAGGTGGCGGCGGGGATGAGAATAGCCGCTCCGGTGAGCGGAGAGTGGAGA AGAAGAGTGAAGTGGTGGTGGGGTGGCCTCCGGTGTGCTCATACCGGAAGAAGAACAGCGTGAATGAAGCTTCAAAAATG TATGTGAAGGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTGACCTCAGCATGCATAAGGGGTATTCTGATTTGGC TTTTGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGTGGAAGCGTTGAAGGATGCGGACAAGTGTGAACACGTTCCCA TTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAAATGTTTACCGAGTCATGCAAGAGGTTG AGGATTATGAAGAGATCAGATGCAAAAGGCTTCAGTCTTCAACAGAAGGGATCTTTAAAGGGATTCATAGAAGGCGCGGC AAAGTGA
Protein sequence (LotjaGi3g1v0361600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKEGLGLEITELRLGLPGGERMSDKNEKKRVFSEIEGGGGDENSRSGERRVEKKSEVVVGWPPVCSYRKKNSVNEASKM YVKVSMDGAPFLRKIDLSMHKGYSDLAFALEKLFGCYGMVEALKDADKCEHVPIYEDKDGDWMLVGDVPWEMFTESCKRL RIMKRSDAKGFSLQQKGSLKGFIEGAAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 176 | 176 | 3.0E-86 | – | |
| PANTHER | 1 | 176 | 176 | 3.0E-86 | ||
| MobiDBLite | 18 | 53 | 36 | - | – | |
| MobiDBLite | 19 | 53 | 35 | - | – | |
| Pfam | 47 | 171 | 125 | 6.5E-43 | ||
| SUPERFAMILY | 72 | 164 | 93 | 8.14E-22 | – | |
| Gene3D | 73 | 177 | 105 | 1.7E-39 | – | |
| ProSiteProfiles | 79 | 167 | 89 | 26.074 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0361600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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