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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0365000 |
Transcript ID | LotjaGi3g1v0365000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | exonuclease V-like protein; TAIR: AT5G60370.1 exonuclease V-like protein; Swiss-Prot: sp|Q9FKK6|EXO5_ARATH Exonuclease V, chloroplastic; TrEMBL-Plants: tr|V7AF84|V7AF84_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0365000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75072812..75077923) extracted from Lotus japonicus Gifu genome v1.2.
TTAGTAACTTGTACGATTTGTTGCCTCTTAACTCATATGAATGATTCCTCCATATTTTGTCAACAATATTTATAGAAGAT TAAAACCATTAACAATGAATAGATTATACACCTTGAGTGTGCTTGATGGTCATCAAGAAATTCATTCTCTACTTCCACAA GTCATCATATTGGGTTTCTCACGAATGTAAACTCATTCATAAACCTGTTGCAGTCTCTCACAACAAATGTTATTTTGGAA ATTCTAACTTGTGTCTTCACCCTTACGATTATGAGTGTACAGGACCCGACCCTATCCATTGACCCGTCCTGGCTCACGTC CCTTAGACGCGCATCTTGTCAGGTTTTTACGGGCTAGGAACGAGCTCGGGTTTAAAAACTGAACCAATCAATACAATACT CAGCACCGGACAAAAGTCAAATCAAACCCATTACAACCTGTCCCCTGAACACCTCTACTTAGAGCATCAGCAACAAATAA ACTTTGTGAGTTTCTTTATGACATGTCATATGAAGTAAAGTTTCTTAACTGTTGCAGAAAATTAAGTTTCTCCACGTGGC AAGCAACTTTGCTCCAAAGTCTAATTTAATGATTAAAAAATAAATAAAAAAGCAAATAAATAGGTAACTGGATTTACAAG AAAGTAGTGAGGTATATTGTGGGATCCATTTAAGAAACTTTTTAGAATTTCTGGATTGGAGTAAAAAGTGAGTAAAGTTT ATTAAAGTGGTTTAAATGACGTGGCATTAAAAAAAAAAAAAAAAAAAAAACTCATTAGAGTTTCTTGGATAATGCTCTTA CGACTATCCTAAAGTTGATTTATTGAAGCTTAATCAATTCTTCAACGGAATATTAGAATCAAATCGTGGCGTTTTCAACG GCCACATTCTCCACCACGCAACAACGAAGAAGACGAGGCCAACACCACCACGATCACCATTCACCACGAACATGGCCGAA ACTTCCTCAGACCACACTCCTCATATACCCATCGAAATCATCACTGACGACGAAATGGCTCTCATTGAAGCTGCTTTCGC TTTCGCTTCCGCTTCCGCTCGTTCTGCTTTTCGTTCATCAACACCGCCACCACCACCACCACCCCTTTCTCCTCCTTCTT CTTCTTCCCCTCTCTTTCGCTCCAATGCACTCTCCATCAAATCCATCACAGTTCTATCCAAGCGAAGCTTCTCACACGCC ACTGGCAGTGGAACGAGTACCCACCACCCTGACATTGAGGATTCTTCGCCCAAATTGAAAACCCTTCTTCCTGATTCCTT TCTCCACCGTTTCAGGAAGAATCGTGGCTTGTCTGTCACTGATATCACATCTACGGTATCAAAATTGTTTCTTTACCTTT ATCTTTTAATGGGTTGTGAGCATGTTTTTATTCATGGTTTTTACATTGTAGCCCAAGTTGAAATGGATAAACTTTTTGAT TGAAATTACTATGAATGTTCTTAATGATAAGTTCTTGTGTGAATTGAAATCAGCTTCTGCAGTTAACTTCCTCATAAGCA CTTTCATAAGTACTAAGCTCTTGTAAGTTGCAAATTTGTCCAAACTAGGCCTGTGTTTGAAGTAAAATAGGAGGAATAAG ATGTAAAGAGTTTTGTATTACATTGTATCCAAATCCAATGCAGGTATGGAATAGTGTCAACTATGAACTCATTGTTCACT GGTTTTCTTACCATTTTGTCCATTTAAGCAAATGAGTGAAAGCCCGAATTCCATTCTGTTTCTGGAATGATATGTTTATT CTATATGAAGGGAAGGCCAAATTCCTTCTTAATTTGAACTACTTGTATGATTGTTGATTCACCAGAGATATAAAATCATT CTTATGACCTTCTGTAAGCTTTTGAATTTTGATGTAATTGGTGAATAAGGACTGCATGTTCTTAGGTTAGCGGAAGTACA TGTGTCAGAGTAGATTTGATTTCTTCTTAATGGAAGAGACTAATAGGTGCTATCCCACCCTTGATCAGTTTGTTAGTAGA TTTGTAGCTTAGTTAGTTGGAGAGTTAAAGGTGAAATGTTATAGAGAGCGACTTGATCTTTGGGGTCATCGTAGGGAAAT TTGGGGAGATTCCTGGATCTCTCAAATAACGAGGAGTTCAGTATACTTTTCATCAGTTAACATAATTATCCGCCCGCTCC TATCATAGACCTACAATTACCTGTCTTTTGTGTATAATGTTATATTCTTTTTTGTTAGATATGTGGAGTCTCACTTGGTG TGGTGTTAATTTTTTCATTTCGGCTGAATACTTTTAGATTTTTATTGATGCCATGCAAAACTTTGTCTGTTTTGAGTAAA AGGGTCGTGGTCAAGTATTTAACTCTATTGAATTTTGTGATAGGAATGGTGTTCAAAGCAAATGGAATTTGCTCTCACTC TTGGAGGGAGGAAGACCAATCAAGTTATGAGAGCTGGCATTGCCCGGCATGCGAAACTTGAAGAAGAGGTACTATCTTGA TTCCTCACAACTCGAATTTCTTACTTCGGGTAACATACATGGTCCTCTTACGCATGGTCCTCTTACACTTATAGTAGTTG AAATCTGTTACTATTTTCATGATTTCTCTATCATCCAATGGTATACCCGTGTCTTATGAGCAGTTCTTACATGCGCACAC TCAAACACTGATGTTGTTGGGTGCAGGTTATAAAACGGGTGGAAGTAAATATCAAATCAAAAGAAGATCAGTGGGCCCTG AAGTTTCTTAATTTTATTAATGGTGTGAATCAACTATTCTTTGAAGGATTAACTCGTGAACTACCAATGTAAGTTACTGA CATTTTATGAGTAAATACTCAGGTTTTCATAGGTTAATAGATTGTGATAACACTAGAAATCAGGTTGTTAACGTGAACTT GACAGTCGAAAAATTGGTTTAGGTTCCGTTATGTTCTTATTGAGTTATGCCTTCTATTATGCTTCAAGTTTTATATGTTC CAACCCATTAAGTTACAAATCTACTATCATACGGTGAACTAAGCTTTTGGAAATTGATAGAATTAACTGGAGTAGTTTTG GTCTTGATGGACTATTCTTACTTCTGATATCAGAATGGGCTTTGCAGAAGATACATGGATAGTAGGAGTGATTGATGAGA TTCGGATGCCATCAACAGAAAATGATCATAATCCGATACTAATTGACACAAAGACACGTGCTCGTGATACTCTACCTTCT GAACCACAGCGAAGAAATGGAAGGTATGTTTATTCTTTGACATTTATTTCATTCTGTTTGATGTGGAATTACTTGCTAAT GCACTTGATTAAATCATTGAATTGCTCTTATTTTGGCAGGCTTCAATTAATGTGTTACAAGTATTTGTGGGACAGTTTAG TCGCTGATGATTTCCCTTCTGAAAAGTTTTTTACTAAATTTGGCTTATACCCTGAACAAACTCTGTGTGAAGATCTGAAA GTGAAAAGTTCTGACCCCAAATATTCTGCATTGGTAAGTAGCTTTTTTATAATGTTCTCTTTGTAATAGTCATCTATTTT TTTTTGGTTTATGAATTATTATAAACTAGGTGGTTAAGCGATGCTGTACTGCTCAAGTGACTGAATTAAGGGTATATTTA TTCATTCATAAACCAAGTATTAAATAAGTGACTGAATTCTCCTGCTCAGGACGACTAAGCACTGCTTCTTTCAGTTGTGT TTGGGTTAAGACGGGGTTTCCTCTTAGGAAAAATGGATCTAAGTTTACATAAAGGGTTTAATTTTATGGCACTCACAATA TATTCTGCTGAAAAGGTTTCAGTTGATTAATAGTGAAGCAGGCCTTTTAAAGATTTTTCTTTCCTATTATTGACAAATGC AGACCCTTGATGATGTGGTGAGATATTACAAAAATACATGTAGCATGCTGCTCCCTGCTCACGATCAGCTTTTATTGAGG TAAGCTCAGAATTTTCAGTGCAGAATTGTAATTTTTTCCCCTAATGTCAAAGACAAGGAATGGTGGTATGTCATGTTGAT ATAGATACAAGTCACAATGTGAATGAGTAGCACTTGGATTGCATTACACGGGTTCTTCTTTAGACACTTTTTTTTTACAC TATATTTAAAGTTTGATTTTGTAAGGAGGAAATGGTTTTCTTTGTTTCATGTCAGATATGAATATCAGAAGGATCATTCG CTGATCGGTGAAGATAAATTTGCATATGATTCCGAGTGGCTAAAAAGTCAAATGCATCGTTGTATTGAGGTTTGGCTTGG AAAGCGAGAAACCACTTATGTTCCTGAGGAGGAGAACTGGAAATGTAGATTCTGTCAATTTGCCACTGTGTGTGATGCAT CGACTGATAGTAAAGGAACTATGGCAAATACAAGCAATGATTCAAATGCCAAACAAGGCTAGTTATCTCAATGCTGGCTC TCTATTGCTATCGTTAGCTGCCTCAATAACGGTGGAAAATGAGAATGCCTGGTCCATTTACTATGCATTGTTTTATTCGT TAATCAAAATGCATTGTAGTTGTAGTTGTTGTTGTTGCAGCTGCATGTCAATTATCTTCGAAACTATTTATATTCCATTC TCATCTTGTATAAATATAATTGTTATTGGAACTTTGTACATATTTTTTTCATACATTTAAAGGCTGGTTACCAATGAAGT CATCATGAATGCACTGGCGATGTTACCATTATACAAAATGAAAAGAGAAAACTTACGATGTTCATATATTTTTTGGTACA AGAGATAAAAGAAAAGAAAAGAATCAGGCTTAGCGCTTAGCAAAGGAAACCCCAAAATAAGAGGTTCAATCTCTTTGGGG GAGATGTTATATATAAGTGGCACTATGAAAGTGAATCAATCTTCAAAACTAGAAGAGCTTAGTGTTGAAAAAATCTAACT TGCAAGAGTGCCACAAGAGACAAAAAGAATGATGGAAAAGGTACAACATGCCGTGACTTGACTCCACCACAATGCTCTAA CTTGTTTTGGTAGAACTCATTTTAATATGTGATATGAAAAGCCTTAAATTTATTTCCTCATAACAATTTCAGCGTCAAAT TTGCACGGGGTATCAATGATTGCTTCATTAACATGATTAGCGTACATATCCAAGAAGAAAAAAACTGTTTAT
CDS sequence (LotjaGi3g1v0365000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGAAACTTCCTCAGACCACACTCCTCATATACCCATCGAAATCATCACTGACGACGAAATGGCTCTCATTGAAGC TGCTTTCGCTTTCGCTTCCGCTTCCGCTCGTTCTGCTTTTCGTTCATCAACACCGCCACCACCACCACCACCCCTTTCTC CTCCTTCTTCTTCTTCCCCTCTCTTTCGCTCCAATGCACTCTCCATCAAATCCATCACAGTTCTATCCAAGCGAAGCTTC TCACACGCCACTGGCAGTGGAACGAGTACCCACCACCCTGACATTGAGGATTCTTCGCCCAAATTGAAAACCCTTCTTCC TGATTCCTTTCTCCACCGTTTCAGGAAGAATCGTGGCTTGTCTGTCACTGATATCACATCTACGGAATGGTGTTCAAAGC AAATGGAATTTGCTCTCACTCTTGGAGGGAGGAAGACCAATCAAGTTATGAGAGCTGGCATTGCCCGGCATGCGAAACTT GAAGAAGAGGTTATAAAACGGGTGGAAGTAAATATCAAATCAAAAGAAGATCAGTGGGCCCTGAAGTTTCTTAATTTTAT TAATGGTGTGAATCAACTATTCTTTGAAGGATTAACTCGTGAACTACCAATAATGGGCTTTGCAGAAGATACATGGATAG TAGGAGTGATTGATGAGATTCGGATGCCATCAACAGAAAATGATCATAATCCGATACTAATTGACACAAAGACACGTGCT CGTGATACTCTACCTTCTGAACCACAGCGAAGAAATGGAAGGCTTCAATTAATGTGTTACAAGTATTTGTGGGACAGTTT AGTCGCTGATGATTTCCCTTCTGAAAAGTTTTTTACTAAATTTGGCTTATACCCTGAACAAACTCTGTGTGAAGATCTGA AAGTGAAAAGTTCTGACCCCAAATATTCTGCATTGACCCTTGATGATGTGGTGAGATATTACAAAAATACATGTAGCATG CTGCTCCCTGCTCACGATCAGCTTTTATTGAGATATGAATATCAGAAGGATCATTCGCTGATCGGTGAAGATAAATTTGC ATATGATTCCGAGTGGCTAAAAAGTCAAATGCATCGTTGTATTGAGGTTTGGCTTGGAAAGCGAGAAACCACTTATGTTC CTGAGGAGGAGAACTGGAAATGTAGATTCTGTCAATTTGCCACTGTGTGTGATGCATCGACTGATAGTAAAGGAACTATG GCAAATACAAGCAATGATTCAAATGCCAAACAAGGCTAG
Protein sequence (LotjaGi3g1v0365000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETSSDHTPHIPIEIITDDEMALIEAAFAFASASARSAFRSSTPPPPPPPLSPPSSSSPLFRSNALSIKSITVLSKRSF SHATGSGTSTHHPDIEDSSPKLKTLLPDSFLHRFRKNRGLSVTDITSTEWCSKQMEFALTLGGRKTNQVMRAGIARHAKL EEEVIKRVEVNIKSKEDQWALKFLNFINGVNQLFFEGLTRELPIMGFAEDTWIVGVIDEIRMPSTENDHNPILIDTKTRA RDTLPSEPQRRNGRLQLMCYKYLWDSLVADDFPSEKFFTKFGLYPEQTLCEDLKVKSSDPKYSALTLDDVVRYYKNTCSM LLPAHDQLLLRYEYQKDHSLIGEDKFAYDSEWLKSQMHRCIEVWLGKRETTYVPEEENWKCRFCQFATVCDASTDSKGTM ANTSNDSNAKQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 5 | 406 | 402 | 1.6E-137 | ||
MobiDBLite | 39 | 61 | 23 | - | – | |
MobiDBLite | 42 | 57 | 16 | - | – | |
MobiDBLite | 81 | 100 | 20 | - | – | |
Pfam | 110 | 227 | 118 | 1.8E-34 | ||
Coils | 158 | 178 | 21 | - | – | |
Pfam | 324 | 390 | 67 | 2.5E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Single-stranded DNA 5'-3' exodeoxyribonuclease activity | Catalysis of the sequential cleavage of nucleotides (such as mononucleotides or dinucleotides) from a free 5' terminus of a single-stranded DNA molecule. |
Expression pattern of LotjaGi3g1v0365000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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