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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0367000 |
| Transcript ID | LotjaGi3g1v0367000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein curvature thylakoid chloroplastic-like; TAIR: AT1G52220.1 CURVATURE THYLAKOID protein; Swiss-Prot: sp|Q9M812|CUT1C_ARATH Protein CURVATURE THYLAKOID 1C, chloroplastic; TrEMBL-Plants: tr|I3S8Y9|I3S8Y9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0367000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75314309..75317569) extracted from Lotus japonicus Gifu genome v1.2.
TGTTTTTAATTACAAAATATAAAAAATAATTAATTAAATAGTTTTTCCCTACCAATAATTATCTAAGTGCAAAAGAGGAA TTACATTTTCAAATAGGTATTTTTGGAAATGGGGGAGACATGAAAATACATTGGGGGCACCAAAATTAATCCATTTTTAA ATGGATATGAATTTGTCTTTATTTTATGTTGGAATTGAACGTCCCTGATTCTGTGGCTCATTTGCTAATCCACTCATCCT TTGCAGCGCTACATCAATCAAATACACGGTAAAGCTTTTTCTTTTTATTTATTATTTGTGTCCTCACTGAATTTTTAGTT CTTATCATCTCATGATCTTTCAATGAAGAAACCGTGAACTAAAATTTGCTATTATATTATAATTAATAATAATAATTATT ATTATTTCTGTCAGAACTTTGAAGGTGCAAATGGCTTCCATTGCTGCGAGCTTGCAGCCACCATTGCTGCTCCATGGTAG AAAATCACATACAGGAAACTTCCCAAGTTTCCCTGTTTCTCTTCTTCCAGGTATGGTAACTCTTTACTGGGTTTCAAAGT TGAAAATTTCAATCCCATAGATACTATGTGGAGCTTGTTTTATTCTATAATGGTTTAAGTTTATAAATTTTTCAATTTTG ATGTTCCAGTGTGAATAAATGAAAGTTTGGCATTTTTAAATATTTTATTAAGTAATGTTGCGAAGTGAAATTTTTTTGGC CTAACCTCTACAAAATTCTTGTGATCAAATGATATAATTACAAAGGTTGAACTATACAATCACCAGCATGGAATTTGGCA ATTGACTGTATTTAGAAATAAAGAATTAAAAGAAGATATTTGTATAAGATTTTTTATGGCTTTTTAGCATGATATGTGCA CTCTTGAGACTTGGTAAAACTGATGAGCATTTTGCACAAGGTGGATCCAATTTAAGAAGTCATTGTTGTATGTGATTTTG AAATAAAAGTTTTCATACAATAAAGCTCAATTTTGAACTTAAGTGGGTTGCTGTTATGTGAGCAATCTGTGATCCTAACT ATGTCCAGGTCCTGATAACACAATTGATTTGATCACTTGTCATTAAAAAAAAAACTTCTAACTTCTGCTGGCGTGTGCCG TATGTGTTTGTATCTCTTTTGATGTACCTGCTCCCTGATGTTTTATTTGGCCACTTCACAGGAAGACGGAATCTTATTGC TTTGGTTGTGAAGGCTTCCGGAGAAAGTTCTGAATCTTCGACTTCCCTAACTGTTTTACAGTCAGTTCAGAATGTTGTGA GTTTCTCCTCCAACTCCCATCCTTCTTTTCTCTCTTTCAAAATAACAAAAAGTACCATATTATCTTAATTTATGTTTTGG TCTGTTGATGTTCAAACAGTGGGATAAACCTGAGGACCGGCTGGGACTAATTGGTTTTGGCTTTGCTGGTATAGTAGCAC TTTGGGCATCAGCAAATTTGATCACGGTAATCTTCATCACGTGTAAAGTATTTTAGAAGTGCGATTGTAAAATTTTGAAG TTTAAACTGCATTACAATGACATTCCTTCTTAATATGGCTATTGAAGCTGTACATTTCTATACCATGAAAATTGAAAAAA AGTGTCTGTAAATTTTATCCCTCTGCCATTCTTATTTTGTTTCTGTCTTTGTGATTTTCATACATAGGCCGTCGACCAAT TGCCAGTTCTTCCAACTGTACTGGAATTGATTGGAATTCTATTCTCCGTAGTAAGTGCTGTGCTAAATAATTGATATGGC TGTGAAAACTCACAAGGAATAAAAAGCACCTATGTGAATCAGAATATTTATTGTAATTTCCATTCTCTCTTTACATTTGG CGATCAATCTAAACTTCTCTTTTTATTTCAGTGGTTTACTTATCGCTATCTCTTATTCAAGCCTGACCGGTGAGCATTTT GATCATCTTTTTTTTCTGATCGATTTCCATTGTTTTGATGTTGACTACATCATTATATCATATAAATACCCGTGATTTCA TAATTGATGTGAGGAAGGAAAAAGAAAATTAATATCAAGGGCCGGTGGATGTTCATACTTGTAGAAAAAGACCTATTTCT GTTATAAAGTCGTTATTGATTAACTACCTTATAAAGAATAATGCCTCTCTAGACTCTAATAGCTAATAAAACCCTATTAT AAATGATATCATTGAGACATTCAATGTTCTTTTCAAGAGAAATCATAGTAGATTGGATAGCTTCTATTGCAGTCAGTTTG CAAGCAACTTCACTTGAGTGTTTTCTTTGTACAGGGAAGAGCTTTTTCAAATCTTGAACAAGTCAGTGTCAGATATCTTG GGCCAGTAAGACGTGCTGCCTCTAGATTGTGATTTGAAGTACAAATTCTCAGCAGCTGAAGTTTTTTTTTTTTTTAATAT GGGATCATTGGTGAAAGATAAGGGATGTAAAAGGGGTTTTGTTTCAAGTCTCTGCTCCTATCTTAGATGACAGTGCAATG CTCATTTATCTGGTTTAAGACCACTAATTTGCATCCATGAATTAAAGTTCATGCCTATTGTGGTAGCTTCTCAATGTTGA ACATAATAAGATGGTGTCACAATTCTAATGAAGTTCCCTTAAGTATTTAGAGAACCTAACAAGAGTACAATCAGAATATA ACCTACTGAATGCCAAGGGAAGAATGAAGACCTTATGCACAGAAGGGTTAGACCCAACAATCACTAATCATTTATCCATT TTTGTTTCAAATATGCTCGAACTATTAATATTTTTCAATATGAATTTATGCATGCCAAACCATTTTACTACAGGCTTATA ATTATATGGACAGAATATATTAAACCCTAACCAGTCCATATATCCATCCAAACACTGAGAGGGAAAGAACCTGAAACATG TAGGAAATATTCTCAAGCAAAAGCAATGGGTCTGCTATTTTATCTTGATGCCATATTTGTGTTGTGAAGTACTTATTTAG CACTGGACTTTTTCTGTTGGTTTAAAATGAAGTAACAAAGTTTATAATTTCATGTAAACTACTTTCAAGTTACTTACCAC TAGGTCAATTCAAATGGTTTCAGGACTGGACGTTTAGGCATTGAATTGTAGGCAATAAACAGAGAGAGAGTTAGGAGAAA ATATTAACAGATAGTTGTTAAAGGATGAACAGAGATCCAAGATACATAGTGAAATGAAAAGTTATTACTTATTACACATT GTAGATAACAAATTAACAAGTTATTACTTATTAGTATTACACATTGTATCATGAACTTGGC
CDS sequence (LotjaGi3g1v0367000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAATTGAACGTCCCTGATTCTGTGGCTCATTTGCTAATCCACTCATCCTTTGCAGCGCTACATCAATCAAATAC ACGAACTTTGAAGGTGCAAATGGCTTCCATTGCTGCGAGCTTGCAGCCACCATTGCTGCTCCATGGTAGAAAATCACATA CAGGAAACTTCCCAAGTTTCCCTGTTTCTCTTCTTCCAGGAAGACGGAATCTTATTGCTTTGGTTGTGAAGGCTTCCGGA GAAAGTTCTGAATCTTCGACTTCCCTAACTGTTTTACAGTCAGTTCAGAATGTTTGGGATAAACCTGAGGACCGGCTGGG ACTAATTGGTTTTGGCTTTGCTGGTATAGTAGCACTTTGGGCATCAGCAAATTTGATCACGGCCGTCGACCAATTGCCAG TTCTTCCAACTGTACTGGAATTGATTGGAATTCTATTCTCCGTATGGTTTACTTATCGCTATCTCTTATTCAAGCCTGAC CGGGAAGAGCTTTTTCAAATCTTGAACAAGTCAGTGTCAGATATCTTGGGCCAGTAA
Protein sequence (LotjaGi3g1v0367000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLELNVPDSVAHLLIHSSFAALHQSNTRTLKVQMASIAASLQPPLLLHGRKSHTGNFPSFPVSLLPGRRNLIALVVKASG ESSESSTSLTVLQSVQNVWDKPEDRLGLIGFGFAGIVALWASANLITAVDQLPVLPTVLELIGILFSVWFTYRYLLFKPD REELFQILNKSVSDILGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 105 | 105 | - | – | |
| PANTHER | 34 | 178 | 145 | 5.4E-66 | – | |
| PANTHER | 34 | 178 | 145 | 5.4E-66 | ||
| Pfam | 93 | 177 | 85 | 4.7E-29 | ||
| Phobius | 106 | 126 | 21 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 127 | 131 | 5 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| TMHMM | 138 | 157 | 20 | - | – | |
| Phobius | 153 | 178 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Thylakoid | A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. |
Expression pattern of LotjaGi3g1v0367000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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