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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0368300 |
| Transcript ID | LotjaGi3g1v0368300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | VHS domain-containing protein; TAIR: AT3G16270.1 ENTH/VHS family protein; Swiss-Prot: sp|Q9C5H4|Y3627_ARATH VHS domain-containing protein At3g16270; TrEMBL-Plants: tr|I1KGL0|I1KGL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0368300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75466499..75471456) extracted from Lotus japonicus Gifu genome v1.2.
TTGCTGCCACAAATCGTTCTTACACCTCATTGCTCTCTCTCTCTCTCTCTGCACGCACACACCTTCAATTCTCACCAAAT CTCACAATTCCCTGTTTAGATTCCTAATCCATCACCAAATTTTGCATCTTTTTCAAATTCCCAACTCGTTTCCCCATCTG GGTATCGCAATTTCATTGCTTTTCATCACCACCCTCCACATCCCCCCAATCGATCCGCGACTTTTCTGATCGTGTTTCAA TTCCCTGCTGATTCTGATAACACCATCCAAATCGATACAGCATTAATCTCAGTGGGTAGGTGTCTGCGGTGTGAATTTTG TCCGATCGATTAAAAATGGAGACGAGTCGAAGAGCGGTGGAATCGTATTGGAGGTCGCGGTTGATTGATTCAGCTACTGC GGATGAAGATAAAGTCACGCCGGTGTACAAGTTGGAAGAAATTTGTGAGCTTTTGCGCTCTTCGCATGCTAGTATTGTGA AGGAGGTGTCAGAGTTTGTCTTGAAACGTTTGGAGCATAAGAGCCCAATTGTTAAACAGAAGGTATAATTAGTGTTTGTG TGTTTGGTTCATGTTTGGTTTGTGAAATTGGATCTGGGGTGGTTCAAAGATTTGATCTTTATGTATTGGGTGTGGAGAAT TATTGAAATAGCTGATAGCATAGATAGGCCATGGAAGTGGGAATCTGCTTGATCAAGAATGTGTTAGAGTTTATTGCTCA TTGAGTAATGTGATTGTGAAAATGCATGATTTTGCATAGATAGGTTCATGTTTACTTTTCTTTCTTGCAATCCAAGGGTG CATAGGTTGTGTGACTAGTGAGAGTTATCCATCTCTTTTTATTTCCAACAATGGAAGGGAGTTATGCTCTAGGAACACTT CCTTCAAATTGAATTGTTGTACTTGTTCTTGAATTTGCATAATGCATTGTAGTGGTTCTAATTCTAGATAGCCCCACTTC ATTTGTAATTATACGGTAGAAGTTTGGTGGTGGGGATATGAAACAAGGATCATAATGATTTTGTTGTCAGAAATTGTATT ATAAATTTGTATGTCATAAGTCTAAGCTCGTTGTGCTTCGTTACTTTGTTGGCAGGCATTAAGATTGATAAAATATGTGG TTGGAAAGTCTGGTGTGGAATTCAGAAGGGAAATGCAGAGACATTCGGTGGCAGTTCGTCAATTATTTCACTACAAAGGA CAATTGGATCCTTTAAAAGGGGATGCACTAAATAAGGCTGTGCGAGACACTGCTCAGGAGGCTATATCTGCCATCTTTTC AGAAGAGAATAAGGCTGTGCCAGCACCTTCTGAAGATGTAAACAGGAGGATACAAGGATTTGGCAATACAAACTATGAAA TGCCATCGGAAGATAAGAAATCTTTTATCAGTGAGGTAGTTGGGATGGGAAGTGCGTCAATTAAGCAAGGACTTAGTAAC TTAACTCAGGGACATTCACTAATGAAGAATGAAACTGGAAGCTACCGGAGTCCAAATCTTCAAAGGTCTTTAACAAATGA AAGAGAACATGGCGACAGATATGAACCAGTTGCATATCGTAATGAAACTCAGAGTAGTTTTGGACTTTCAAGGAATCAAT CTAGTGGTCCTTGGAATCAAGATTCAAGAGTAAATAAGGTGGAAATTTCAAATGGGGAATCCAGTGCAAATCATTCAGAG AGTAAGACAAGAGAGGAAAGGTTGGTGGAGTCAATTGTAACTTCTGGAGGTGTTCGTCTACAACCCACTCGAGATGCCAT TCAAGTTTTTCTAACAGAGGCTGCAAAGTTGGATGCCCTGGCTTTAAGTCATGCCCTTGAACTAAAGCTCCAATCTCCAA TTTGGCAGGCATGTCTGTTATGTTATTTTTCCTACAAAGAATATAAATTCATACATGAAAGAACCATATGAACTATACAA GTGTTCGCTTGTTTATTTAAATGAGTAGGTAAACTGGCAGACAAAATTCTTTTTCAAGTATTTTGGAATCATAATATGGT GGAATTTTACATTAACTTTTTCTGGTGGAAAAAAGTTTTAATGTAAAATGGGTTTTGTATGCATTTTAGCATCTATGTTC TTTTTTCCTCGTATTATTAGACCTTGTAATCTTGCTGCATCAATGCACAGACAAGTGAAGGCCATGGGTAATGAATCGTT AGTTATAATTTTCATTAAATATTGACATTTTGCATGTACTGTATGAAACTATATAATAGCTTAAAGTTCTTTCTGCATTT CTTTTATTTTACGCTTCTTGTAAATATTTTCAGGTTCGCATGAAAGCTGTTTGTGTCCTTGAGTCCATCCTTAGAAAGAA AGATGATGATCATTTTTCACTTGTGGAATCTTACTTTACTGAAAATAAAGACGTGGTGCTGAGATGTTCTGAATCCCCCC AAGCCTCTTTGAGGGAAAAGGCTGTGAAGGTACCCTTATATAATCAACCTGGAATTAATAATTATGACATGATAATTTTA CATTCTCATTCATTCATATTTTACAATTTTGTCAATTTTACCTTAGGTTTCCGTGATTAATAGACTGGTGACCTAGGAAG AGTAAATTTTGGTCATTTAGAATGGCAATATAGATCGCTAGTTTGTATTGAACTTCAGATTGTGATGAGGTTGAAAATAG TGATGGGGTCATCAATTTTGTAATATTAATATAAAATATTAGTTGTTGACAGACTATTTGCTGACCGTAAAGAAAAGGAT GGGTAGTTTGGATAGCCAAAAAAAGATTTTAATTAAGTGATGATATAGATAGAAGTGTTTACATGACTTTAGTGATTATG TGGAGGGCATTAAGGTTTGAGAACTTTGGTTTATAAGGTTTAGCCCTGGAGATGGGAGAATTATGTGTTTACAGGTTATG GATGGATATGGATGGGTTTGTCAGAAACAACTTTGAGAATGGGTTGGTAGGATGCTAATTATACAAATGAAATATAAATT GCAAAACACCGTTAATATAGATGCCGCGTAATGAATTTCTTCTGCATCCCAAACCTTTGAAAGTGTGAAGTTCTTTCTTG TTCTTGATCAAGTATTCAAGAAATGAATTATCCTACTCCGGATATCTGTGTCATTTGTATATTTTTTAAGGGTTTTATAT GCTTTTCATCCCCGTAAATTTGTAATGTTTGATTTTGGCCGCTATTAAAATGTGTCAATTTTATAAAGACGACAAATATA TTTAGCCCATTTTAATATTTTAACGCTGCTTTGTAAAGTCCACTAATAACTATTAAGTTTGATAGCAACAATTGTCATTT AATTTAGCACTTGTCCCCTTGATGGACAGGTTCTCGGTCTTCTAGGTGGAATTCAGCCAAATAGCTTTGCTATTAATTCA GAGAAGGCTGTAAAGACAGAGAGTGCTATTGTTGCTGAGTTGCCTGACTTGATAGACACTGGCGATTCAAGTGATTATCT CCGAACTGATGACCCAACAAAGAGTACAAACAACCCAAATATAACAAATTCGACATCATCCACACCCCTAGTTGATGATT TATTTGGAGATTTTAGTGGCTCCAATGGAGCTAGTCATGAACTGAAAAATGATGATGACCCGTTTGCTGATGTATCATTT CATGCAAGTGAGAAAAAAGGACATGCAGATGATCTCTTTTCGGGGATGACAGTTGGTGGTGATAAACAGGGTGATAATGC GAATCACGTGTTGGGGAATAAAAGCGATCCTGAACTTTTTGACATTTTTGCTTCCAATTCCGAGCAAGGAAACAAAGAGT TCGTTGGAGACTTAATGGCTGGTTTGTCAATTGATGAAAATACCTCAAGTACGAAGCAGAAGGGAACATCTCCCACCTTG GAATCTGAATCTTTATTTACAGGTTTAAATAATCATATCCCTGACAATACTTCAGGTGGCATGTTGGGCTCTCAGCCACT TGGATTTAATGTAAATCCCATGTTTCCTGCCGGTAGTCTTCCTTATAATATACAACCTGGTGTTATGTTGAACCATCCGT ATACCTCTCAGCCTCTTAATTATGGTGCTATGGGAACTCTCTTGGCTCAGCAACAATTCCTGGCAACAATGGCTAATTTC CAACACCTTAGTAATGTGAACATGCGAGATGATGGTGTTGCTCAAATTGCTGGACCCAATGGAAGAACACCGATACCAGA CATATTTCAACCAGGTTTTTCACCTCAAACTCCCAGCTCAATGATCAACAGTTCAAAGAAAGAAGACACTAAAGCATTTG ATTTTATCTCGGTAAGTATGGGTGTATATGCTTTTGTGTGTCCTTCCGTTGGTTTAATTTGTGTTGTTAATCTTCTGGTT TGAATATACAGCTTTGTGAAATACAAAATCTGTTTAGGGTTAATATTAGCAACTTGAATGAAATCAAATAATTTTGAACA TGATATATCTTCAGAAACATGTCACACTTAGCTTTTGGCTTTTGGCTTGCTTCATTATATACATTACTCGGCGTAATACT TTGTCTAGCATTTGGTGGATTGACATGATCACATTGTTTCATGCTTGTAGGACCATCTTGCCTCTTCTCGTGATTCAAGG AGAGTGATTTGAAATTTCGGTTTGTGCTTTGTGGACAATATTTTCATGGTGTTGTAGTGTTTTATTGACATTATTAGATC AAATTGTAGTTTATAGTTTCCTTTCTTGTACGCTTTTCCATGTTACCAACACAATAAATGATGAACATTGCCAGTTCTCA ATGTTTTGGATAGAATATAGCAAGATAGTGCTGTTTGTTTATATTTTCATGAGTATGTTGTGTACGTAGTTAATGCTTGA GATTTTGCTACTGTAATTCAAGCACTATGAAAAAATACTACTCTCTCCTCTCACATTATTTATTGATTGTGTTGAAAGAG TATGTCTTCATTCCTATTTGTATTCATTGTATGGTTTTATCGGCACACATGAAACAAAGATTTGATACCAAGATAATC
CDS sequence (LotjaGi3g1v0368300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACGAGTCGAAGAGCGGTGGAATCGTATTGGAGGTCGCGGTTGATTGATTCAGCTACTGCGGATGAAGATAAAGT CACGCCGGTGTACAAGTTGGAAGAAATTTGTGAGCTTTTGCGCTCTTCGCATGCTAGTATTGTGAAGGAGGTGTCAGAGT TTGTCTTGAAACGTTTGGAGCATAAGAGCCCAATTGTTAAACAGAAGGCATTAAGATTGATAAAATATGTGGTTGGAAAG TCTGGTGTGGAATTCAGAAGGGAAATGCAGAGACATTCGGTGGCAGTTCGTCAATTATTTCACTACAAAGGACAATTGGA TCCTTTAAAAGGGGATGCACTAAATAAGGCTGTGCGAGACACTGCTCAGGAGGCTATATCTGCCATCTTTTCAGAAGAGA ATAAGGCTGTGCCAGCACCTTCTGAAGATGTAAACAGGAGGATACAAGGATTTGGCAATACAAACTATGAAATGCCATCG GAAGATAAGAAATCTTTTATCAGTGAGGTAGTTGGGATGGGAAGTGCGTCAATTAAGCAAGGACTTAGTAACTTAACTCA GGGACATTCACTAATGAAGAATGAAACTGGAAGCTACCGGAGTCCAAATCTTCAAAGGTCTTTAACAAATGAAAGAGAAC ATGGCGACAGATATGAACCAGTTGCATATCGTAATGAAACTCAGAGTAGTTTTGGACTTTCAAGGAATCAATCTAGTGGT CCTTGGAATCAAGATTCAAGAGTAAATAAGGTGGAAATTTCAAATGGGGAATCCAGTGCAAATCATTCAGAGAGTAAGAC AAGAGAGGAAAGGTTGGTGGAGTCAATTGTAACTTCTGGAGGTGTTCGTCTACAACCCACTCGAGATGCCATTCAAGTTT TTCTAACAGAGGCTGCAAAGTTGGATGCCCTGGCTTTAAGTCATGCCCTTGAACTAAAGCTCCAATCTCCAATTTGGCAG GTTCGCATGAAAGCTGTTTGTGTCCTTGAGTCCATCCTTAGAAAGAAAGATGATGATCATTTTTCACTTGTGGAATCTTA CTTTACTGAAAATAAAGACGTGGTGCTGAGATGTTCTGAATCCCCCCAAGCCTCTTTGAGGGAAAAGGCTGTGAAGGTTC TCGGTCTTCTAGGTGGAATTCAGCCAAATAGCTTTGCTATTAATTCAGAGAAGGCTGTAAAGACAGAGAGTGCTATTGTT GCTGAGTTGCCTGACTTGATAGACACTGGCGATTCAAGTGATTATCTCCGAACTGATGACCCAACAAAGAGTACAAACAA CCCAAATATAACAAATTCGACATCATCCACACCCCTAGTTGATGATTTATTTGGAGATTTTAGTGGCTCCAATGGAGCTA GTCATGAACTGAAAAATGATGATGACCCGTTTGCTGATGTATCATTTCATGCAAGTGAGAAAAAAGGACATGCAGATGAT CTCTTTTCGGGGATGACAGTTGGTGGTGATAAACAGGGTGATAATGCGAATCACGTGTTGGGGAATAAAAGCGATCCTGA ACTTTTTGACATTTTTGCTTCCAATTCCGAGCAAGGAAACAAAGAGTTCGTTGGAGACTTAATGGCTGGTTTGTCAATTG ATGAAAATACCTCAAGTACGAAGCAGAAGGGAACATCTCCCACCTTGGAATCTGAATCTTTATTTACAGGTTTAAATAAT CATATCCCTGACAATACTTCAGGTGGCATGTTGGGCTCTCAGCCACTTGGATTTAATGTAAATCCCATGTTTCCTGCCGG TAGTCTTCCTTATAATATACAACCTGGTGTTATGTTGAACCATCCGTATACCTCTCAGCCTCTTAATTATGGTGCTATGG GAACTCTCTTGGCTCAGCAACAATTCCTGGCAACAATGGCTAATTTCCAACACCTTAGTAATGTGAACATGCGAGATGAT GGTGTTGCTCAAATTGCTGGACCCAATGGAAGAACACCGATACCAGACATATTTCAACCAGGTTTTTCACCTCAAACTCC CAGCTCAATGATCAACAGTTCAAAGAAAGAAGACACTAAAGCATTTGATTTTATCTCGGACCATCTTGCCTCTTCTCGTG ATTCAAGGAGAGTGATTTGA
Protein sequence (LotjaGi3g1v0368300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METSRRAVESYWRSRLIDSATADEDKVTPVYKLEEICELLRSSHASIVKEVSEFVLKRLEHKSPIVKQKALRLIKYVVGK SGVEFRREMQRHSVAVRQLFHYKGQLDPLKGDALNKAVRDTAQEAISAIFSEENKAVPAPSEDVNRRIQGFGNTNYEMPS EDKKSFISEVVGMGSASIKQGLSNLTQGHSLMKNETGSYRSPNLQRSLTNEREHGDRYEPVAYRNETQSSFGLSRNQSSG PWNQDSRVNKVEISNGESSANHSESKTREERLVESIVTSGGVRLQPTRDAIQVFLTEAAKLDALALSHALELKLQSPIWQ VRMKAVCVLESILRKKDDDHFSLVESYFTENKDVVLRCSESPQASLREKAVKVLGLLGGIQPNSFAINSEKAVKTESAIV AELPDLIDTGDSSDYLRTDDPTKSTNNPNITNSTSSTPLVDDLFGDFSGSNGASHELKNDDDPFADVSFHASEKKGHADD LFSGMTVGGDKQGDNANHVLGNKSDPELFDIFASNSEQGNKEFVGDLMAGLSIDENTSSTKQKGTSPTLESESLFTGLNN HIPDNTSGGMLGSQPLGFNVNPMFPAGSLPYNIQPGVMLNHPYTSQPLNYGAMGTLLAQQQFLATMANFQHLSNVNMRDD GVAQIAGPNGRTPIPDIFQPGFSPQTPSSMINSSKKEDTKAFDFISDHLASSRDSRRVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 686 | 686 | 7.7E-198 | ||
| Gene3D | 2 | 139 | 138 | 1.5E-53 | ||
| CDD | 13 | 132 | 120 | 2.53068E-50 | – | |
| SMART | 13 | 148 | 136 | 6.6E-26 | ||
| Pfam | 17 | 129 | 113 | 2.6E-7 | ||
| ProSiteProfiles | 35 | 89 | 55 | 10.142 | ||
| SUPERFAMILY | 36 | 386 | 351 | 1.81E-9 | ||
| MobiDBLite | 192 | 206 | 15 | - | – | |
| MobiDBLite | 192 | 219 | 28 | - | – | |
| MobiDBLite | 228 | 247 | 20 | - | – | |
| MobiDBLite | 410 | 437 | 28 | - | – | |
| MobiDBLite | 419 | 437 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi3g1v0368300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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