Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0370100
Transcript ID	LotjaGi3g1v0370100.1
Related isoforms 4	LotjaGi3g1v0370100.2 LotjaGi3g1v0370100.3 LotjaGi3g1v0370100.4 LotjaGi3g1v0370100.5
Lotus japonicus genome version	Gifu v1.2
Description	Receptor-like kinase; TAIR: AT5G48380.1 BAK1-interacting receptor-like kinase 1; Swiss-Prot: sp\|Q9ASS4\|Y5838_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380; TrEMBL-Plants: tr\|A0A072TLE6\|A0A072TLE6_MEDTR LRR receptor-like kinase; Found in the gene: LotjaGi3g1v0370100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:75736129..75740251) extracted from Lotus japonicus Gifu genome v1.2.

GTGTTGTATGGTTGCTTTTAATACAATGCAACACTTGAGTTTTGCTTATGTATTTAATGCTAAAACTCAAGTGTGCTTTA CATATATATATATATAGATTTCATTTTCACTTTATTTTTCATTTATCTCTCTTTTCTTTTAATCATATCATTAATGACAT ATCATTTCTTCGTATTTCTTTCCTTTATCTTCTCTTAGCTTTTTTTACTAAAATCATTGCACAATAGGACCCTTTTTTCC AGAAAGACGAGTCGGAGTCAGCAACTGAACAAGCACTATCACTTTCGCAAGTCTTCGCGGTTCTGTAGTCAAGTCTTCTC TCAAGCTTGGAAATTTTTGGCTTACCTTGTTTGACCCGTTCCAATTTCCAAATTCTTTCTCATGTTCACACCAGAAACAG TAAGCATATCTCAAAGGTAGCTTCTTTCTTCTCTCCTCCTCTCTGAAATTTTCAAACTTTATATTCATAGTCTTCATATT CTGCACCTTACTCAGTTCATGTTCTTTTTTTTTTGGCTTTCCTTCTCAGCAGTGCGAAGTTTCCTGTGAGCTTCATGCGT TTTCCTGCGTTGGGTTGTTCAAAAACCCAGGTGGGTATTTGAGCACTTCTTTAAAAACCATTGTTTTCAATTCATATCTG AGTTAGCTTTATTGGGTTTCTCAAAGTTTTGATTTTTTTCTTTTCCTTCTTTCAAGAAGTCATACTTTGTTGGGGGGGTG AGAATTTTGGTCTAAAGTAAAGGATCTTTCTTTGCCTTTGTTTGTATCTCTTTGGATGGTTGACTTGGTTTGTGAGCTGA ACTATGTTTATGCTGTTTTGTTTTTCTTTTCAGTGTTTCTCAGGGTTTGTTCTGAGGAGGATTATGGTGCTATGGAGTTT ATTATTATAGTTTGTGCTGTGCCTTGAATTGGATACCAATTTCAGTGAGGTGTCTGGATTACTTCTTCTTGGATTGTGTT AGAATCTTGGTGAAGATGGTTGTTCTAAGTAGCCGGATTTTCAGTTCTCATATTTTTGTTAACTTCATGCTGCTGATTAG TATCGGGACAACCTATGGGACTGAAACTGACATCTTGTGCTTGAGAAACATAAAAAATTCCCTTCAAGACCCCAATAATT ATTTGCAATCATCTTGGAATTTCAACAACAATACTGAAGGGTTTATCTGTAGATTTAATGGGGTTGAATGTTGGCACCCT GATGAGAACAGGGTTTTGAACCTCAAACTGTCCAATATGGGACTCAAGGGCCAGTTTCCTCGTGGCATTGTAAATTGCTC AAGCTTAACAGGCTTAGATCTTTCGAATAATGGTCTTTCTGGAACCATTCCAGTAGATATAAACACTCTTGTACCATTTG TGACAGCTTTTGATCTATCTTCAAATGAATTGTCTGGGAATATACCTGTCAATCTTGCAAATTGTACCTATCTTAATACC CTGAAACTCGACCAGAATCGACTCACAGGTCAAATTCCTGCACAATTGGGCCTTCTTCAACGACTCAAGACATTTTCAGT AGCTAAGAATCTTTTGACGGGACCAGTTCCGAACTTTCCCAGTGGCAAAGTTGACGTAAGCTATGGAAATAATCAAGGCC TGTGTGGAGGTTCATTGGGGAGTTGCCAGGACAGTGGTTCCTCCAAGAGTAACACTGCAGTTATAGCTGGAGCAGCTGTT GGTGGGGTGACTCTTGCAGCATTAGGATTGGGTGTTGCAATGTTCTTCTACGTGCGCCGTGTTTCGTACAGGAAGAAGGA AGTGGACCCTGAAGGCAACAGATGGGCAAGAAGTCTAAAAGGAACTAAAGCAATTAAGGCAAGTTGTGCTGATGACTTAT ACTGCGCGTATATGATTACTATTAGAGAGCTTTTCATTTTTCTTCTGAGATCCATTTGGTTTTTATACTTTTAGTAAAAA CTAGTTTATTTGAAACATTTCCTTTTTTATACTTTCAACTAGAGGGCATGCCTTGGCGCAACAATAAGGTTGCTGCCTGG TGACTTTGCGGTCAGAAGTTCGAGCCGTGGAACCAGCCTCTTGCAAAAAATGCAAGGTACGGTTGGCTACATTAGATTCA CAAGGTGGATCCAGCCCCTCCCTAGACCTTGCTCATATTAGGAGCTTTATAGCATTAGGTTTGCCCTAATTTTGTATTTT CTTACTTTCAATTGAAGCATTTTCTTAATAACTATTATATTTGCTTGATATTGTTCTTTATAGTAATTGGGAGAACTTTT TGTGCATACTGCTACACCAAACACATTGAAGTAATATATTTTCTAAATGAAACTGAGATTGTATTCATTTTCAATGTCAA AGTTAGAAAATATAGAATATACTTGCTGCAAAGTTATTTTGTGTAAAACTTTCAGATCTGTTGTAGTTCAAATGATTTTA CATACTATTGAACTCTTGTGAGAATATTATGCATGAGCCTAACAATACTGAATTGGACATCAGGTTTCTATGTTTGAGGG ATCAATTTCAAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAGCTTCAGCAACAACAATATCATTGGGTCAGGAA GAACAGGAACTTTTTACAAAGCTTCTCTTGTTGATGGCCCAACACTCATGGTTAAGAGATTGCAGGAATCTCAGCACTCT GAGAAAGAATTTATGTCTGAGATGCAAACATTGGGGACTATCAAACATCGTAACCTGGTTCCTCTTTTAGGTTTTTGCAT GGCCAAAAAGGAGAGGCTGTTGGTCTATAAAAACATGCCGAATGGCAACCTCCATGATCAACTACATCCCGCTGCTGGTG AGTGCACCCTTGATTGGCCTTTGAGACTGAAAATTGCAATTGGAGCAGCCAAAGGATTAGCGTGGCTTCACCATAGCTGC AATCCCCGTATTATCCACCGAAACATAAGCACCAAGTGCATCTTGTTGGATGCAGATTTTGAGCCCAAAATTTCTGATTT TGGCCTTGCCAGATTGATGAACCCAGTCGATACTCATTTGAGTACTTTTGTCAACGGTGAGTTTGGGGATTTAGGTTATG TTGCTCCCGAGTATGCAAAAACTCTGGTAGCGACACCTAAGGGGGATGTTTTTAGCTTTGGAACCATACTTCTTGAGTTG GTAACGGGTGAAAGACCTACAACTGTGTCTAAAGCTCCAGAAACTTTTAAAGGAAATCTCGTAGATTGGATTACAGAGCT CTCAAGCAACTCACAACTCCATGATGCCATTGATGAATCACTAGTCGGCAAGGGTGTTGATAATGAGCTTTTCCAAGTTT TGAAGGTTTCATGCAACTGTGTTTTATCAATTCCAAAGGAGAGGCCCACCATGTTTGAAGTATATCAGCTTTTAAGAGCT ATTGGGGGTGCATACAATTTCACAACTGAGGATGAGATATTGTTACCGGAAGATATTGGTGATACTGAAAACATGGTGGA ACTTATTGTTGCTCGAGAAGGAAATAACTGAAAAGGTATGCCTATAGGGTATCTGTAATCAGTTTTAATATGTAATTATC TATATCTTACTTTGTTGTCTTAAAATAAATTAGTGTTATAAATAGTTTTGAGGATCTAGATCAAGTTGTGTGCTATTATC TTTAAATATAAATGTCAATATGAGATAATCATAGATTATATATAGTTGGGTTACTTCTTTCTAATCCTGGTTTTTTTATC TGATTTGCTTGTTCTCCTCTTGTATGCTTATGTGTGGTTGAAGCTCTTTTAGTAGTTTTCATGCCTCCTCCTGCAAGTTC CATTTGAGCTTGGGGCGCGTGCACAATCTACCTTGTGCTGGAACTAAACTACTATTTAGAAGAATGAAGATGGTGATAAT CGAATTCCTGACCGGTTTTGATACTTTGTTATTGCCCAATGTTCCAAAGGGTAAATACTAAATACTAGTAGTAATGAGTT CCCGAAGAGCATCTCCAATGCAAGGTTATTAGGTTATTAGTTCTTATTTCTGAGCTAAGAACTAAGAACTGATTTCTTAA CCGTTAGAGGGGGAGGGGGCTGACGTGGAGTTCTTAGTTCTTAAAAATAAAATAAGAACTAGTTCTATAAGAAGTTTTAC TTTTTGAGTTCTTAGTATAAAAAATTATTTTTTTCACTTTCAT

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0370100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTGAGGGATCAATTTCAAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAGCTTCAGCAACAACAATATCAT TGGGTCAGGAAGAACAGGAACTTTTTACAAAGCTTCTCTTGTTGATGGCCCAACACTCATGGTTAAGAGATTGCAGGAAT CTCAGCACTCTGAGAAAGAATTTATGTCTGAGATGCAAACATTGGGGACTATCAAACATCGTAACCTGGTTCCTCTTTTA GGTTTTTGCATGGCCAAAAAGGAGAGGCTGTTGGTCTATAAAAACATGCCGAATGGCAACCTCCATGATCAACTACATCC CGCTGCTGGTGAGTGCACCCTTGATTGGCCTTTGAGACTGAAAATTGCAATTGGAGCAGCCAAAGGATTAGCGTGGCTTC ACCATAGCTGCAATCCCCGTATTATCCACCGAAACATAAGCACCAAGTGCATCTTGTTGGATGCAGATTTTGAGCCCAAA ATTTCTGATTTTGGCCTTGCCAGATTGATGAACCCAGTCGATACTCATTTGAGTACTTTTGTCAACGGTGAGTTTGGGGA TTTAGGTTATGTTGCTCCCGAGTATGCAAAAACTCTGGTAGCGACACCTAAGGGGGATGTTTTTAGCTTTGGAACCATAC TTCTTGAGTTGGTAACGGGTGAAAGACCTACAACTGTGTCTAAAGCTCCAGAAACTTTTAAAGGAAATCTCGTAGATTGG ATTACAGAGCTCTCAAGCAACTCACAACTCCATGATGCCATTGATGAATCACTAGTCGGCAAGGGTGTTGATAATGAGCT TTTCCAAGTTTTGAAGGTTTCATGCAACTGTGTTTTATCAATTCCAAAGGAGAGGCCCACCATGTTTGAAGTATATCAGC TTTTAAGAGCTATTGGGGGTGCATACAATTTCACAACTGAGGATGAGATATTGTTACCGGAAGATATTGGTGATACTGAA AACATGGTGGAACTTATTGTTGCTCGAGAAGGAAATAACTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0370100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFEGSISKMKLSDLMKATNSFSNNNIIGSGRTGTFYKASLVDGPTLMVKRLQESQHSEKEFMSEMQTLGTIKHRNLVPLL GFCMAKKERLLVYKNMPNGNLHDQLHPAAGECTLDWPLRLKIAIGAAKGLAWLHHSCNPRIIHRNISTKCILLDADFEPK ISDFGLARLMNPVDTHLSTFVNGEFGDLGYVAPEYAKTLVATPKGDVFSFGTILLELVTGERPTTVSKAPETFKGNLVDW ITELSSNSQLHDAIDESLVGKGVDNELFQVLKVSCNCVLSIPKERPTMFEVYQLLRAIGGAYNFTTEDEILLPEDIGDTE NMVELIVAREGNN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.30.200.20 View details on G3DSA:3.30.200.20 Search for proteins/transripts with this domain View external data on G3DSA:3.30.200.20	1	94	94	1.8E-32	–
PANTHER	PTHR45974 View details on PTHR45974 Search for proteins/transripts with this domain View external data on PTHR45974	2	317	316	8.5E-185	–
PANTHER	PTHR45974:SF93 View details on PTHR45974:SF93 Search for proteins/transripts with this domain View external data on PTHR45974:SF93	2	317	316	8.5E-185	–
SUPERFAMILY	SSF56112 View details on SSF56112 Search for proteins/transripts with this domain View external data on SSF56112	6	295	290	3.51E-67	IPR011009 Show description in modal box View details on IPR011009 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50011 View details on PS50011 Search for proteins/transripts with this domain View external data on PS50011	21	305	285	30.054	IPR000719 Show description in modal box View details on IPR000719 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07714 View details on PF07714 Search for proteins/transripts with this domain View external data on PF07714	24	294	271	2.2E-37	IPR001245 Show description in modal box View details on IPR001245 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.510.10 View details on G3DSA:1.10.510.10 Search for proteins/transripts with this domain View external data on G3DSA:1.10.510.10	96	310	215	3.6E-55	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004672 View details of GO:0004672 AmiGO InterPro QuickGO	Molecular function	Protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.	Subterm of View details of GO:0016301 View details of GO:0016773 View details of GO:0140096
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of View details of GO:0008144 View details of GO:0032559 View details of GO:0035639
GO:0006468 View details of GO:0006468 AmiGO InterPro QuickGO	Biological process	Protein phosphorylation	The process of introducing a phosphate group on to a protein.	Subterm of View details of GO:0006464 View details of GO:0016310

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0370100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0370100.1