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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0370200 |
| Transcript ID | LotjaGi3g1v0370200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox-leucine zipper family protein; TAIR: AT4G04890.1 protodermal factor 2; Swiss-Prot: sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL FACTOR 2; TrEMBL-Plants: tr|A0A061GGE7|A0A061GGE7_THECC Protodermal factor 2 isoform 1; Found in the gene: LotjaGi3g1v0370200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75882664..75887909) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCTCTGCTTAGATCGCTGTTTCTCGAGTGGTGTCGATCACACATGGACTTCAGGTGATCTTTCTTTTCTTTAATATC TCCATGTTCTCGCTCCTAATAAACTCTTTCATACAAGATTGAAGCTTGAAAAACAGGCATGTGAATTTCAAAGCATAGAA AAACTAACATTTTTATACTGTATAGGGAAAATAATTTTGGGTTTCTGGTACATCTGCACTCACATTCTCTTCAACCTCAG TTTCACCCACTTTTCTTCTTATCTCTCTCTCTCTTCATTTCCGATCACTTCGCTCACCATGTGTCTCACTTCTCTCTTTT AGGGGTGTTCGCGGTTTTGATTGGATCGGTTTTCAGGGGAAAATCCACCCGATCCATTCCCTTCGATTTTTTCACTTTAT CATCCAACCAATTTTTTTCTCTTTTTCAAATCTAAACCAATCCGATCTGATTTTTATTAGTTTGGATTGGATTAGATTTC GGTTTTTTAAAGACGCTGTAAATATCAAAATCAATGAAAAATAATAATTAATTTAAATCATAGAACAATATATTACAAAC TAAACAATGAGGGTTTGGAATAAGAAGAATTTTTTTTAGTCATGCATAGTAGATGACATATTTTTCAAATATATGTTCAC TTTGATGCATATTTTTCAAATTGTTACTTAAAAGTCTATTTACTGAAATATATCTTCATAAATAAGTACGCTTCATATAA TAATTTTAAAACATATATGGACGTAACTGTGTAAATATGAATGATATGATATATGTACAAATAAAATTATATATTTGCAA ACATTCGGATTGGATTTGATGAGTTTGATTTTGAAAATCAAATCCAATTCAATAAAAAAATCGATTTTCTCAATTTTGAA TCTATTCGGTTTTCGGTTTGATTGAATTTCAGTTTTTTGAATCTATTTTTCAATTTTTATTGGATTGGATCGGTTATGAA CACTCCTACTCTTTTTTATTCTTATATTTTTTTGGCCGTGTGGATGGAATTGAGATGTGAATAAATATATATGTATTTTT TTTTGTCCCTGTGTAAGAAATGGTGTAGAAGTCTACTCGCATTAATGGTTGTTGTATATCATTAATTGAATTGATAATTG TGAAATGTTTTTTTCACTTCAATTTTGAAAAATAAAAGATTCCAAATAAGCATACTCTTTACTTATTTATTTTTTGTTTT CACTTATATGTGTGATCATTTAAATCGCGATAATTTCATAAGCTATGTTTTTTTTTCTGAGACCACGGCTAAACCAAACA TGCATGATATGTTTTCATGTTTTCTTGATAAAATAAAATCATTTTCACACTTTTTTTATGAAAGCACAGGCGCTTCAGGG AAACAATGTTGAACTTTGAAATTCAACAAGTCGAGCACAACATGTCATCATCCTGGGAAGCACCACTGACTTCATCACAA GGTGAAAACATAAGGAACAGAGGTGGTGATCAACAATCAGCAGTTGCGACTCTTCAGAATGTGGTAGAAGCTCCTCCTGC TTCCAGTGAAGGCGCCCAAGTTCAAGATTCCAACCAAGGAACCATGAGAAAGGGCTATAAACGCCACTCTCATCTCCAGA AAAAAGAAATGGAAAGGTAGGGCTCCAATGTACCTCTTTATTTTAAATAAGACATCTTTGTTTTCTCAAAAAAAATATTT TTGAACTATGCTCTTTTCAGCTTCTTCAAGGAATGCCCTTACCCTAATGAGAAGCAAAGGAGTGAGCTTGGAAATTTGAT CGGGCTGAATTCTTCCCAAATCAAGTTTTGGTTCCAAAACAAGCACGTCCAAATGAAGGTAAGGGACATAACCTTTATAA GCTTATACAATAGTTGCATTAAATTTTAACGTGCTTTTCAATGTCAATGTGATTTGTTGTCTCTCTACACGACTCATACT CATTTTCTCTTAATCATACCATGTAGGCTATGAAGGAACGTCATAAGAGTACTCTTTTGATTGCTGAGAATGAAAAGCTT CGTGCTGAGAATTTGAAGTACAAGGAGGCACTGAGTAAGGCTAAGTGCCATGGTTGTGGAGGCTCATGTTCTGTTGGTGA AATGTACTTTACAGAGAAATATTTGAGGTTCGAGAATTCTCAATTGAAAAAAGAGGTACATACCACAAATTTCATCTCTA GACATTTTTCATTTATCATCTTCTTATTTGTTGAAGTAAAATAAGGTCTTGCAACTTTTTTGCTTTGTTTTAATTTCAGA TTGAGAATATGGCAACAAAAATTGCTGAAAAACTTGCAGAGACTTCCTTTTCTAACCTGCCACCACTACCTCTCACTCTA GGGCCTTCACGCTCGCTTGATGTTGTTAACTATGTTCCACAGCCAAGCATGGCAATGCAAGTGCATGGTGGCAGTGATTC TCAAAGGTCAATTATCGTAACTCATTTTACTGAATCTGAGAGAGCCTATATTGTGGAGCTTGCGATTTCCGCAATGGAGG AATTTACAAAGATGGCTCATGATGGAGGAACTTTATGGATCCCTGGAATCCATGCTGATATTCTAAATAAACAAGAATAT GTTAGGCATTTCAATGTAAGACTAGGTCCAAGACCCTTGGGGTTTAGATCTGAAGCTTCAAGGGAATCCATGACTGTTAT CATGAATCCTAATAACCTCATTGAAATCCTTATGGACGTGGTGAGCATTATACTTAATTTCTTCCAAAAATGAAATTTCA CCATTTATTAACATTGATATATGTATATATATACTTACTTTTGTGTCGACATCAATTTTCAGAACCAATGGTCAACTATG TTTTCCAACATTGTTTCAAGAGCAAGTATAATTGAAATTCTGTCAATTGGAGGGGCAAGAAACTATGATGGAGCCTTACA AGCGGTGTGCAAATTTTCCTCCTTTTATCTTTTCTTCACCTATCCGAGACCTGATTAATAGGATGTTTGGATCTGTTCTC TCTTCTCTTAGAATCAATTACGGGGAAATCGACCTTTCATGTAATCATTTTTTTGTTCTTTTCAGATGTCAGCAGAGTTC AAGGTGTTGTCACATCTTGTTCCCACTCGTGACAGCTATTTCATAAGATATTGTAAGCATCACCCAGATGGGGCTTGGGT GGTGGTTGATATTTCCTTGGACAATATACGACCCGGTGCTACTACAAGATGCAAAAGACGACCCTCTGGTTGTATGATTC AAGAATTGCCAAATGGTTTCTCAAAGGTGTTACTTCAAATGAAACAGTTTCTTCAATGATTCACCACATTGTTGATAATA TATTGTCTTCGAGTATTGAAACCAATTAGTTTTTTTCTTCAGGTTACATGGATTGAACATGTAGAAGTTGAAGACATAGA GGTGCACAATATCTTCAAACATCTAGTTAATTCGGGTTGTGCCTTTGGAGCTAAGCGATGGATAGCAACTTTAGACAGAC AATGTGAACGTCTCGCTTACACAATGGCAATAAACAAACAACCAAGGGACAATGGTGGTATGTGACATATTTCCCTTCTC AATTTTTTTGTTCCTTTCATTTTTAAGATCTTATTTGATCAAATTTTAATAAAGGCTTAAACTTCATTGTGAATTTCAAT CCTATTATGCATAAGATATAGGGATAACTCCTGAAGGAAGAAAAGGCTTGATGAAGTTGGCAGCGAAAGTTATGCAGAGC TATTGCAACTATGTTGGTGCTTCCCCACCACATGGTTGGACAGTACAGAAAACACCACCAGCTTGTGTTGGTGATGTGAG GATCATGACCAGAAACTATATTGTTGAATCTGGTGCACTTATCGGACTTGTTATTAGTGCTGCAACTTCTTTCTCACTTC CAGTTCCTTCCAAGAGGCTCTTTGATTTTCTTCGAAATGAGAAATCAAGAAACCAGGTACTACATCATTTAAACTAATGC TTACATGATTTTAGTCAGATAAATCTAAATATCTAGAATGTGGGAAAATAAATTAATGTGTACCTCTATGACCGTCGGGG CCCAAATTGGCTTAGAATAAATAAATTGAAGACACATTTAAAATTGTGGGTAATGCTGTTTTTTTTTTGTTAATGGTAAT GATGTGTGTGTCGTTCTCATTTGATGTATGTTTCTTGAGCCCATTTATACTCTGGGCTCGCACAAGTCACAACCCACCTA ATAAACTTAGAAATTTGCAGTGGTTTCCAATGCCTAAAAGGTTGGTTCTTGGCCTTGATTTGGTTGCTATAATGTATCCA TTAAACTTATAAACTTCTTGTTGAATTGTAGTGGGACTTTTTCACACAAGAGGCTCAGGTTCATGAACTGGCACACATAG CAAATGGTCGTGATCCTGGAAACTATGTCTCTTTACTTTGTGCCAATGTAAGTTGGTAGTTTAGTTTAGCGTTTGAAACA TCCAATATTATACATTTCACAACAATATATAATTTAACAACCCTTTTTTTGTAAATGACATTGTAGAGTGCAAATGCCAA CGAAAGCAGCAAGATCATAGTTCAAGAGAACTGCACTGACTATACAGGCTCATATGTGGTTTATGCTCCTATTAAATTTG ATACCATGAATTTAATCTTGAGTGGGTCTAATCCAGATTATGGTACCCTTCTGTCCTCGGGCTTTGCCATTCTTCCTAAT GGGCCTGGGCTGAGTGGCGAGCCCATGACTAATGTTGCATCTAGAGGATGTCTTTGTACAATTTCATATCAGACATGGGT TGAAGCAACTCTAACACCACTTCCTCCTGACGTAGTGTCCTCTTTCTGCAATTTGATGAACTACACAGTTGAAAAAATTC AAGCAGCAATGATGAGTATCAACATTTGATTGCTGATAGTAAGCAAATTAATTAACATTCAATATTACATAAATGATTTT ACTTTAGTACTTTATTAGGATTGATGTCCATATGCTTAAGTTTAATTAACATTTGTTTTGTGACAGAGGGTCTAAATTGT GTTTCTTCCCTTTGATACAGTTAGTAGACAAAGACATGCTGAGTTCAGAACAAAGGAAACAAGTAAATGAAAGCACCTTA GGAAGGATCTTAGGTTCGAGCATTGACTTTTCCTAATGAAGAAGATGAGAGTAGTTCCAACATAACTTGATTTATTTATC AATGTCTGAATCGAGCCAACCCAAATTGACAGTCTTACTTGTGCGATGCAACAGTTTATTAATATCATATGTAATATTTT TAAGATTTCTGAAAATCATGTTAAGGTTATTTTAGTTTAAATAAAA
CDS sequence (LotjaGi3g1v0370200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTTCAGGCGCTTCAGGGAAACAATGTTGAACTTTGAAATTCAACAAGTCGAGCACAACATGTCATCATCCTGGGA AGCACCACTGACTTCATCACAAGGTGAAAACATAAGGAACAGAGGTGGTGATCAACAATCAGCAGTTGCGACTCTTCAGA ATGTGGTAGAAGCTCCTCCTGCTTCCAGTGAAGGCGCCCAAGTTCAAGATTCCAACCAAGGAACCATGAGAAAGGGCTAT AAACGCCACTCTCATCTCCAGAAAAAAGAAATGGAAAGCTTCTTCAAGGAATGCCCTTACCCTAATGAGAAGCAAAGGAG TGAGCTTGGAAATTTGATCGGGCTGAATTCTTCCCAAATCAAGTTTTGGTTCCAAAACAAGCACGTCCAAATGAAGGCTA TGAAGGAACGTCATAAGAGTACTCTTTTGATTGCTGAGAATGAAAAGCTTCGTGCTGAGAATTTGAAGTACAAGGAGGCA CTGAGTAAGGCTAAGTGCCATGGTTGTGGAGGCTCATGTTCTGTTGGTGAAATGTACTTTACAGAGAAATATTTGAGGTT CGAGAATTCTCAATTGAAAAAAGAGATTGAGAATATGGCAACAAAAATTGCTGAAAAACTTGCAGAGACTTCCTTTTCTA ACCTGCCACCACTACCTCTCACTCTAGGGCCTTCACGCTCGCTTGATGTTGTTAACTATGTTCCACAGCCAAGCATGGCA ATGCAAGTGCATGGTGGCAGTGATTCTCAAAGGTCAATTATCGTAACTCATTTTACTGAATCTGAGAGAGCCTATATTGT GGAGCTTGCGATTTCCGCAATGGAGGAATTTACAAAGATGGCTCATGATGGAGGAACTTTATGGATCCCTGGAATCCATG CTGATATTCTAAATAAACAAGAATATGTTAGGCATTTCAATGTAAGACTAGGTCCAAGACCCTTGGGGTTTAGATCTGAA GCTTCAAGGGAATCCATGACTGTTATCATGAATCCTAATAACCTCATTGAAATCCTTATGGACGTGAACCAATGGTCAAC TATGTTTTCCAACATTGTTTCAAGAGCAAGTATAATTGAAATTCTGTCAATTGGAGGGGCAAGAAACTATGATGGAGCCT TACAAGCGATGTCAGCAGAGTTCAAGGTGTTGTCACATCTTGTTCCCACTCGTGACAGCTATTTCATAAGATATTGTAAG CATCACCCAGATGGGGCTTGGGTGGTGGTTGATATTTCCTTGGACAATATACGACCCGGTGCTACTACAAGATGCAAAAG ACGACCCTCTGGTTGTATGATTCAAGAATTGCCAAATGGTTTCTCAAAGGTTACATGGATTGAACATGTAGAAGTTGAAG ACATAGAGGTGCACAATATCTTCAAACATCTAGTTAATTCGGGTTGTGCCTTTGGAGCTAAGCGATGGATAGCAACTTTA GACAGACAATGTGAACGTCTCGCTTACACAATGGCAATAAACAAACAACCAAGGGACAATGGTGATATAGGGATAACTCC TGAAGGAAGAAAAGGCTTGATGAAGTTGGCAGCGAAAGTTATGCAGAGCTATTGCAACTATGTTGGTGCTTCCCCACCAC ATGGTTGGACAGTACAGAAAACACCACCAGCTTGTGTTGGTGATGTGAGGATCATGACCAGAAACTATATTGTTGAATCT GGTGCACTTATCGGACTTGTTATTAGTGCTGCAACTTCTTTCTCACTTCCAGTTCCTTCCAAGAGGCTCTTTGATTTTCT TCGAAATGAGAAATCAAGAAACCAGTGGGACTTTTTCACACAAGAGGCTCAGGTTCATGAACTGGCACACATAGCAAATG GTCGTGATCCTGGAAACTATGTCTCTTTACTTTGTGCCAATAGTGCAAATGCCAACGAAAGCAGCAAGATCATAGTTCAA GAGAACTGCACTGACTATACAGGCTCATATGTGGTTTATGCTCCTATTAAATTTGATACCATGAATTTAATCTTGAGTGG GTCTAATCCAGATTATGGTACCCTTCTGTCCTCGGGCTTTGCCATTCTTCCTAATGGGCCTGGGCTGAGTGGCGAGCCCA TGACTAATGTTGCATCTAGAGGATGTCTTTGTACAATTTCATATCAGACATGGGTTGAAGCAACTCTAACACCACTTCCT CCTGACGTAGTGTCCTCTTTCTGCAATTTGATGAACTACACAGTTGAAAAAATTCAAGCAGCAATGATGAGTATCAACAT TTGA
Protein sequence (LotjaGi3g1v0370200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFRRFRETMLNFEIQQVEHNMSSSWEAPLTSSQGENIRNRGGDQQSAVATLQNVVEAPPASSEGAQVQDSNQGTMRKGY KRHSHLQKKEMESFFKECPYPNEKQRSELGNLIGLNSSQIKFWFQNKHVQMKAMKERHKSTLLIAENEKLRAENLKYKEA LSKAKCHGCGGSCSVGEMYFTEKYLRFENSQLKKEIENMATKIAEKLAETSFSNLPPLPLTLGPSRSLDVVNYVPQPSMA MQVHGGSDSQRSIIVTHFTESERAYIVELAISAMEEFTKMAHDGGTLWIPGIHADILNKQEYVRHFNVRLGPRPLGFRSE ASRESMTVIMNPNNLIEILMDVNQWSTMFSNIVSRASIIEILSIGGARNYDGALQAMSAEFKVLSHLVPTRDSYFIRYCK HHPDGAWVVVDISLDNIRPGATTRCKRRPSGCMIQELPNGFSKVTWIEHVEVEDIEVHNIFKHLVNSGCAFGAKRWIATL DRQCERLAYTMAINKQPRDNGDIGITPEGRKGLMKLAAKVMQSYCNYVGASPPHGWTVQKTPPACVGDVRIMTRNYIVES GALIGLVISAATSFSLPVPSKRLFDFLRNEKSRNQWDFFTQEAQVHELAHIANGRDPGNYVSLLCANSANANESSKIIVQ ENCTDYTGSYVVYAPIKFDTMNLILSGSNPDYGTLLSSGFAILPNGPGLSGEPMTNVASRGCLCTISYQTWVEATLTPLP PDVVSSFCNLMNYTVEKIQAAMMSINI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 24 | 75 | 52 | - | – | |
| MobiDBLite | 24 | 82 | 59 | - | – | |
| PANTHER | 60 | 743 | 684 | 9.6E-257 | ||
| PANTHER | 60 | 743 | 684 | 9.6E-257 | – | |
| SUPERFAMILY | 70 | 136 | 67 | 2.48E-15 | ||
| Gene3D | 70 | 137 | 68 | 6.0E-15 | – | |
| ProSiteProfiles | 74 | 134 | 61 | 14.123 | ||
| SMART | 76 | 138 | 63 | 3.3E-12 | ||
| CDD | 77 | 135 | 59 | 2.24778E-13 | ||
| Pfam | 77 | 132 | 56 | 2.1E-13 | ||
| Coils | 147 | 167 | 21 | - | – | |
| Coils | 189 | 209 | 21 | - | – | |
| ProSiteProfiles | 259 | 489 | 231 | 42.074 | ||
| SUPERFAMILY | 262 | 488 | 227 | 4.94E-32 | – | |
| CDD | 266 | 485 | 220 | 5.31773E-104 | – | |
| SMART | 268 | 486 | 219 | 6.1E-46 | ||
| Pfam | 269 | 486 | 218 | 3.6E-46 | ||
| SUPERFAMILY | 506 | 739 | 234 | 4.53E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi3g1v0370200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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