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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0372700 |
| Transcript ID | LotjaGi3g1v0372700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CHUP1, chloroplastic; TAIR: AT1G52080.1 actin binding protein family; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A151SH88|A0A151SH88_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0372700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76328734..76332067) extracted from Lotus japonicus Gifu genome v1.2.
TCATGCTCTTATAAATGCAATGTTTCGATTATTATTCCACCCCTTCAATAACATGAAACAGAGAGGCTTGGTTTCTTCAG TTTTTTTGCATTTTTTTAATGTTATTGCACGTTGGTTGTTTAGGTATTTTGCTAGCTCATTATTTTTTTAAATGTTCATG TTTTTCGTTTGATCATGGTTTTGTGTTGAATGTTGATAGGCATGAAGTCGAAATGGGTCTTGAGTTTTCTTTGGGGGCAT GAAGAGGACATAATTGATCTCTACCTGTATATATCATCATGGAGAAAAGAATTATTAGAAGGTTTTTAAAATTATTTGGC AGAGAAGAGAAGCGCATGAAGCCTATTCTGCTGAAATGTGGTTTGGCTTTGGCTCTTACCTTTGCTGGATTTCTCTACTC TCACCTCAGAACAAAAAGAATCAAGGCTTCTGCTTCATCCCCTAGGGGACACCCTCAAGGTTTGTTTTCTCACCGTATCA AAATTTTCTCTAGCTTCAGGGTGTGCGGGTAAACAGCTTCATTAAACGTTTATTCATGTGCGAGTTTGAGAAACTTAATG AATAAAGCTTAACTTATGTTATAGTTAAGCATAAGTTCTTATTCATAAGCTAATTTGAACATCTTATGAAAATAAACTCA AAACAGCATATGGGTAGACCATAAGAAATTTAGGGAAACTCTCACCAACACTTGCATAAGTTGCTTATACTATGAGAATA ACTCAAATAAGCTCTTCCAAACAAGGCTTAGCTTTTGTTATTCTCTTCTTTTGAACAATGAATCTAACTATCTAAGGTGA TATTTTTTGCATGTATGATGTCTTTCTCAGGACATGGGAACGAAGGAGGAGGTAGAAGAGTAGCATCTTGCAGCAATCTT TCAGAGGGAAATTTTTTGGACACTGTAAGTTAATTACATGAGAAGAGCTTATAATTGTGTGTGTTTTTTGTAGTTGCTAG GTTGAGTGTAATTTTGCATTCATTTTTACATTTAGAAATCTAGATAGTCTTGTGTTTGTAATCAGTAATTGGAAAAATCA AATAGACATTGATAATTGGTAAAAATTGTTTAGATTTCTTTCATTCAACTTAAACGAGGTTATTACATTTATTTTGTACC AGGAGGAAGCATGCATCAAGAAGGGGGTTGGTAAAAATTCTCAACGTTGTCTCTCTCCAAGAACTAAGCAAAGTGGAGAG GAAGATGAGTTCCTTCTACCTGAATTCAATGATGTTATGAAGGATGCAGAGTTCGGAGTTGCAGGAAATTCTTTTAAGAA AGTTGGACCTCCTGTAGCATATGCAAGTCTTGAGAAGGATGACTATGAGCAAGAGATCTGGCAGCTCAGGAACATGATCA GAATGCTTCAGGAGAGGGAACGAAGCCTCGAGGTTCAACTTCTTGAATACTGCGGTCTCAAAGAGCAAGAAACAGTTGTC ATGGAGCTCCAAAACAGATTGAAGATAAGTAACATGGAGGCAAAGATGTTCAATCTCAAGGTTGAGACCTTGCAGTCCGA GAATTGGAGGTTAGCAGAACAGGTGGCTGATCATGCAAAAGTACTGGCTGAGCTTGATGCTGCTAAAACCAAAGTCAAGT TTTTGAAGAGGAAAATCAGGCATGAAGCTGAACAGAACAAGGAGCAAATCATAAATCTTAAACAAAGAGTTTCCAAGTTG CAAGACCTGGAAAGCCAAGCTACTGCTAGTGATCAAGAAATTGAAACCAAGCTGAGAAGGCTAAAGGATCTTGAGGCCGA GGCAGAACAGTTGCGGAAAACTAATTTGAGACTGCAGATGGACAATTCTGACTTAGCTAGAAGGTTGGACTCTACTCAGA TCCTTGCCAATGCTGTTCTGGAAGATCCAGAGGTAATAAGATTATAACCAATGACTCTTTTCCTTTTATTAAATACATGT TTGGATCATTAGTTTCAAAAAAAAAAAATACATGTTTGGATCATCTTCTCTTTCTTCAGAATCAATATTCTGGCACCCAG AAGCTACTCAGCAGAAGTCAGAAGCTTCTCCCCAGAATTGATTTTGTGTGACTTTAGAATTAATTATAGAAGAATTTCCA AACATACAGCATAACTATTTGTCAAAATCAATTTCACCTCATGTTTTTGGATGCAGGCAGATGCTTTGAGGGAAGAAGGC GAGCGTCTTAGACTAGAGAATGAGGGCTTGACGAAGGAAGTTGAGCAACTACAAGCCGATCGATGCTCAGATGTTGAAGA GTTAGTCTACTTGAGGTGGATAAATGCTTGCTTAAGGCATGAGATGCGAAACTATCAACCGCCTCCTGGTAAAACCGTCG CGAGGGACTTGAGTAAGAGTTTAAGCCCTACATCTGAGAAGAAAGCCAAGCAGCTCATAGTTGAATATGCAAATAACACT GAAGGGAGAAGGAGCCTTTCTGATTTTGATTCTGACCAATGGTCCTCCTCCCAGGCTTCTTTTCTAGAAGACTCTGGTGA ATGTGATGATTATTCTCCTCTTGAGAATTCATCTGATGCCAGAGTTAACAACACCACAAGTAAATCCAAGATTTTCAGCA AGCTTATGAGGCTGATACAAGGCAAAGATAACCATCATAACCGTAGTCGAGTTACATCTCAAGAAAAATATGTATCTCAA GAAGATAGCAACACTCCAAATTTCAGATTTAGTATATCAACTGGGAATGATACTAGTAGAGCTGAGGGTCGTCGTCGGAG TATTAGCGAGTTTGCAACTCCCTCTGGCATATCTAGAACTTCCTTAGATTTGAGCCGTACGATGAGTTTGAAAGATGAAA TTAGGAGAAATCCAGATGTCCTTGCCTCAGGAAGCTCAAGGAATTTCACTCCAAGCAAAAGGGGTTCAGGAGATTTAAAA AGCTCAGTAAATTCTTTCTCAGATTCCTCTCGCTCAGACAATTCTAATTTGGTGAAATATGCTGAAGCTTTAAAGGACTC TAGTGGGACTCCAAAACATAAGATACATCGAAGAACAGCATCATTTAGTTCATTTTAACTTGTTAGCTACACTGAGATTT TACCATTTTGAACTGGGAATATTACAGTTTAGCAGGTTATCCAGTAGTCAGTCCTGATATACCATATTAGTTGTTAGGAG CTGTTCAGATATCAGACACTGGTATTAACTACAGTGTATTAAATAAGGATGCACTTCAAATCCCTGGTAAGGATTTCTCA GTAATAATTCAGTTCAGAGTTATTGCAACATTTTAGTGCGTGTTTGGACATCGTCTGAGTTGATTGTGGATAAAATTGAT TACAGTGAAAATGGGTTGAAAGTAAAACAATATTCATTTGGATACATTTATGAG
CDS sequence (LotjaGi3g1v0372700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAAAGAATTATTAGAAGGTTTTTAAAATTATTTGGCAGAGAAGAGAAGCGCATGAAGCCTATTCTGCTGAAATG TGGTTTGGCTTTGGCTCTTACCTTTGCTGGATTTCTCTACTCTCACCTCAGAACAAAAAGAATCAAGGCTTCTGCTTCAT CCCCTAGGGGACACCCTCAAGGACATGGGAACGAAGGAGGAGGTAGAAGAGTAGCATCTTGCAGCAATCTTTCAGAGGGA AATTTTTTGGACACTGAGGAAGCATGCATCAAGAAGGGGGTTGGTAAAAATTCTCAACGTTGTCTCTCTCCAAGAACTAA GCAAAGTGGAGAGGAAGATGAGTTCCTTCTACCTGAATTCAATGATGTTATGAAGGATGCAGAGTTCGGAGTTGCAGGAA ATTCTTTTAAGAAAGTTGGACCTCCTGTAGCATATGCAAGTCTTGAGAAGGATGACTATGAGCAAGAGATCTGGCAGCTC AGGAACATGATCAGAATGCTTCAGGAGAGGGAACGAAGCCTCGAGGTTCAACTTCTTGAATACTGCGGTCTCAAAGAGCA AGAAACAGTTGTCATGGAGCTCCAAAACAGATTGAAGATAAGTAACATGGAGGCAAAGATGTTCAATCTCAAGGTTGAGA CCTTGCAGTCCGAGAATTGGAGGTTAGCAGAACAGGTGGCTGATCATGCAAAAGTACTGGCTGAGCTTGATGCTGCTAAA ACCAAAGTCAAGTTTTTGAAGAGGAAAATCAGGCATGAAGCTGAACAGAACAAGGAGCAAATCATAAATCTTAAACAAAG AGTTTCCAAGTTGCAAGACCTGGAAAGCCAAGCTACTGCTAGTGATCAAGAAATTGAAACCAAGCTGAGAAGGCTAAAGG ATCTTGAGGCCGAGGCAGAACAGTTGCGGAAAACTAATTTGAGACTGCAGATGGACAATTCTGACTTAGCTAGAAGGTTG GACTCTACTCAGATCCTTGCCAATGCTGTTCTGGAAGATCCAGAGGCAGATGCTTTGAGGGAAGAAGGCGAGCGTCTTAG ACTAGAGAATGAGGGCTTGACGAAGGAAGTTGAGCAACTACAAGCCGATCGATGCTCAGATGTTGAAGAGTTAGTCTACT TGAGGTGGATAAATGCTTGCTTAAGGCATGAGATGCGAAACTATCAACCGCCTCCTGGTAAAACCGTCGCGAGGGACTTG AGTAAGAGTTTAAGCCCTACATCTGAGAAGAAAGCCAAGCAGCTCATAGTTGAATATGCAAATAACACTGAAGGGAGAAG GAGCCTTTCTGATTTTGATTCTGACCAATGGTCCTCCTCCCAGGCTTCTTTTCTAGAAGACTCTGGTGAATGTGATGATT ATTCTCCTCTTGAGAATTCATCTGATGCCAGAGTTAACAACACCACAAGTAAATCCAAGATTTTCAGCAAGCTTATGAGG CTGATACAAGGCAAAGATAACCATCATAACCGTAGTCGAGTTACATCTCAAGAAAAATATGTATCTCAAGAAGATAGCAA CACTCCAAATTTCAGATTTAGTATATCAACTGGGAATGATACTAGTAGAGCTGAGGGTCGTCGTCGGAGTATTAGCGAGT TTGCAACTCCCTCTGGCATATCTAGAACTTCCTTAGATTTGAGCCGTACGATGAGTTTGAAAGATGAAATTAGGAGAAAT CCAGATGTCCTTGCCTCAGGAAGCTCAAGGAATTTCACTCCAAGCAAAAGGGGTTCAGGAGATTTAAAAAGCTCAGTAAA TTCTTTCTCAGATTCCTCTCGCTCAGACAATTCTAATTTGGTGAAATATGCTGAAGCTTTAAAGGACTCTAGTGGGACTC CAAAACATAAGATACATCGAAGAACAGCATCATTTAGTTCATTTTAA
Protein sequence (LotjaGi3g1v0372700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKRIIRRFLKLFGREEKRMKPILLKCGLALALTFAGFLYSHLRTKRIKASASSPRGHPQGHGNEGGGRRVASCSNLSEG NFLDTEEACIKKGVGKNSQRCLSPRTKQSGEEDEFLLPEFNDVMKDAEFGVAGNSFKKVGPPVAYASLEKDDYEQEIWQL RNMIRMLQERERSLEVQLLEYCGLKEQETVVMELQNRLKISNMEAKMFNLKVETLQSENWRLAEQVADHAKVLAELDAAK TKVKFLKRKIRHEAEQNKEQIINLKQRVSKLQDLESQATASDQEIETKLRRLKDLEAEAEQLRKTNLRLQMDNSDLARRL DSTQILANAVLEDPEADALREEGERLRLENEGLTKEVEQLQADRCSDVEELVYLRWINACLRHEMRNYQPPPGKTVARDL SKSLSPTSEKKAKQLIVEYANNTEGRRSLSDFDSDQWSSSQASFLEDSGECDDYSPLENSSDARVNNTTSKSKIFSKLMR LIQGKDNHHNRSRVTSQEKYVSQEDSNTPNFRFSISTGNDTSRAEGRRRSISEFATPSGISRTSLDLSRTMSLKDEIRRN PDVLASGSSRNFTPSKRGSGDLKSSVNSFSDSSRSDNSNLVKYAEALKDSSGTPKHKIHRRTASFSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 12 | 628 | 617 | 3.7E-282 | – | |
| PANTHER | 12 | 628 | 617 | 3.7E-282 | ||
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 23 | 43 | 21 | - | – | |
| Phobius | 44 | 628 | 585 | - | – | |
| MobiDBLite | 49 | 70 | 22 | - | – | |
| Coils | 150 | 170 | 21 | - | – | |
| Coils | 184 | 204 | 21 | - | – | |
| Coils | 229 | 319 | 91 | - | – | |
| Coils | 336 | 363 | 28 | - | – | |
| MobiDBLite | 483 | 528 | 46 | - | – | |
| MobiDBLite | 496 | 521 | 26 | - | – | |
| MobiDBLite | 558 | 628 | 71 | - | – | |
| MobiDBLite | 564 | 600 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0372700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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